Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.94560	Cxxc5	CXXC finger 5	18		67393
Gene Ontology	DNA binding | zinc ion binding
Human Homolog	CXXC5[CXXC finger 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 199 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GGATGGGGAG (5) 62 0.062 P8 Cb GC ATAAAAAAAA (33) 11.4 0.0114 P8 Cb GC AATGAGAAAA (6) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC AAAAAAAAAG (19) 3.3 0.0033 P8 Cb GC GCAGGGAGAG (2) 3.3 0.0033 P8 Cb GC TTTGTGTCAA (4) 3.3 0.0033 P8 Cb GC ATAACAAAAA (6) 1.6 0.0016 P8 Cb GC ATGAGTGAGC (3) 1.6 0.0016 P8 Cb GC GCTGCCCTTG (2) 1.6 0.0016 P8 Cb GC TGTGCGCCCT (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GGATGGGGAG (5) 41.6 0.0416 Cb medulloblastoma ATAAAAAAAA (33) 25.4 0.0254 Cb medulloblastoma AAAAAAAAAG (19) 13.9 0.0139 Cb medulloblastoma TGTGCGCCCT (4) 6.9 0.0069 Cb medulloblastoma ATGAGTGAGC (3) 4.6 0.0046 Cb medulloblastoma ATAACAAAAA (6) 2.3 0.0023 Cb medulloblastoma GCTGCCCTTG (2) 2.3 0.0023 Cb medulloblastoma GCTGGGCCTG (5) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GGATGGGGAG (5) 50.2 0.0502 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture ATAAAAAAAA (33) 5.7 0.0057 P8 GC+1d culture ATGAGTGAGC (3) 5.7 0.0057 P8 GC+1d culture TTTGTGTCAA (4) 4.6 0.0046 P8 GC+1d culture ATAACAAAAA (6) 3.4 0.0034 P8 GC+1d culture GCAGGGAGAG (2) 3.4 0.0034 P8 GC+1d culture CCCGTCCCTC (3) 2.3 0.0023 P8 GC+1d culture TGTGCAGAGG (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAG (19) 1.1 0.0011 P8 GC+1d culture AATGAGAAAA (6) 1.1 0.0011 P8 GC+1d culture CAGGAGAAGC (3) 1.1 0.0011 P8 GC+1d culture GCTGCCCTTG (2) 1.1 0.0011 P8 GC+1d culture GTTGGAAAGA (7) 1.1 0.0011 P8 GC+1d culture TGTGCGCCCT (4) 1.1 0.0011 P8 GC+1d culture TTTGTGTCAT 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GGATGGGGAG (5) 39.8 0.0398 P8 GC+SHH+1d culture ATAAAAAAAA (33) 21.1 0.0211 P8 GC+SHH+1d culture AAAAAAAAAG (19) 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture TTTGTGTCAA (4) 4.7 0.0047 P8 GC+SHH+1d culture TGTGCGCCCT (4) 3.5 0.0035 P8 GC+SHH+1d culture TGTTGTTGAA 2.3 0.0023 P8 GC+SHH+1d culture TTTGTGTCAT 2.3 0.0023 P8 GC+SHH+1d culture AATGAGAAAA (6) 1.2 0.0012 P8 GC+SHH+1d culture ATAACAAAAA (6) 1.2 0.0012 P8 GC+SHH+1d culture ATGAGTGAGC (3) 1.2 0.0012 P8 GC+SHH+1d culture GCAGGGAGAG (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTCCTCCTT 1.2 0.0012 3T3 fibroblasts GGATGGGGAG (5) 31.5 0.0315 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TGTGCGCCCT (4) 7 0.007 3T3 fibroblasts ATGAGTGAGC (3) 3.5 0.0035 3T3 fibroblasts ATGGGGGTGG (3) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GGATGGGGAG (5) 14.8 0.0148 E15 cortex TGTGCGCCCT (4) 9.9 0.0099 E15 cortex CAGGAAAGCT 4.9 0.0049 E15 cortex GCTGCCCTTG (2) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GGATGGGGAG (5) 18.2 0.0182 P1 cortex CAGGAAAGCT 13.6 0.0136 P1 cortex AAAAAAAAAG (19) 9.1 0.0091 P1 cortex GCTGCCCTTG (2) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GGATGGGGAG (5) 38 0.038 Hypothalamus ATAAAAAAAA (33) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus AAAAAAAAAG (19) 5.4 0.0054 Hypothalamus GCAGGGAGAG (2) 3.6 0.0036 Hypothalamus ATAACAAAAA (6) 1.8 0.0018 Hypothalamus ATGGGGGTGG (3) 1.8 0.0018 Hypothalamus CAGGAAAGCT 1.8 0.0018 Hypothalamus CAGGAGAAGC (3) 1.8 0.0018 Hypothalamus GCTGGGCCTG (5) 1.8 0.0018 Hypothalamus TGTGCGCCCT (4) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GGATGGGGAG (5) 105.1 0.1051 E12.5 retina ATAAAAAAAA (33) 11.3 0.0113 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina ATAACAAAAA (6) 3.8 0.0038 E12.5 retina AATGAGAAAA (6) 1.9 0.0019 E12.5 retina TTTGTGTCAT 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GGATGGGGAG (5) 25.5 0.0255 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina ATAAAAAAAA (33) 16.4 0.0164 E14.5 retina TGTGCGCCCT (4) 7.3 0.0073 E14.5 retina TTTGTGTCAA (4) 7.3 0.0073 E14.5 retina CCGCAGCGTT 5.5 0.0055 E14.5 retina ATAACAAAAA (6) 3.6 0.0036 E14.5 retina AATGAGAAAA (6) 1.8 0.0018 E14.5 retina CCCGTCCCTC (3) 1.8 0.0018 E14.5 retina GCTCCTCCTT 1.8 0.0018 E14.5 retina TGTGCAGAGG (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GGATGGGGAG (5) 34.4 0.0344 E16.5 retina TGTGCGCCCT (4) 12.7 0.0127 E16.5 retina ATAAAAAAAA (33) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina ATAACAAAAA (6) 1.8 0.0018 E16.5 retina GCTCCTCCTT 1.8 0.0018 E16.5 retina GTTGGAAAGA (7) 1.8 0.0018 E16.5 retina TTTGTGTCAA (4) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GGATGGGGAG (5) 54.6 0.0546 E18.5 retina ATAAAAAAAA (33) 30.9 0.0309 E18.5 retina TTTGTGTCAA (4) 12.7 0.0127 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina AAAAAAAAAG (19) 5.5 0.0055 E18.5 retina ATAACAAAAA (6) 5.5 0.0055 E18.5 retina AATGAGAAAA (6) 1.8 0.0018 E18.5 retina CCCGTCCCTC (3) 1.8 0.0018 E18.5 retina TGTGCGCCCT (4) 1.8 0.0018 E18.5 retina TGTTGTTGAA 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GGATGGGGAG (5) 60.8 0.0608 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TGTGCGCCCT (4) 5.9 0.0059 P0.5 retina ATAACAAAAA (6) 3.9 0.0039 P0.5 retina ATAAAAAAAA (33) 2 0.002 P0.5 retina ATGAGTGAGC (3) 2 0.002 P0.5 retina CAGGAAAGCT 2 0.002 P0.5 retina CTGTTTGTAT (2) 2 0.002 P0.5 retina GTTGGAAAGA (7) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GGATGGGGAG (5) 89.7 0.0897 P2.5 retina ATAAAAAAAA (33) 14.1 0.0141 P2.5 retina TGTGCGCCCT (4) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina TTTGTGTCAA (4) 5.3 0.0053 P2.5 retina AAAAAAAAAG (19) 3.5 0.0035 P2.5 retina ATAACAAAAA (6) 3.5 0.0035 P2.5 retina AATGAGAAAA (6) 1.8 0.0018 P2.5 retina ATGAGTGAGC (3) 1.8 0.0018 P2.5 retina CAGGAAAGCT 1.8 0.0018 P2.5 retina CAGGAGAAGC (3) 1.8 0.0018 P2.5 retina GCAGGGAGAG (2) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GGATGGGGAG (5) 57.5 0.0575 P4.5 retina ATAAAAAAAA (33) 21.8 0.0218 P4.5 retina AAAAAAAAAG (19) 13.9 0.0139 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina ATAACAAAAA (6) 5.9 0.0059 P4.5 retina TTTGTGTCAA (4) 5.9 0.0059 P4.5 retina AATGAGAAAA (6) 2 0.002 P4.5 retina ATGAGTGAGC (3) 2 0.002 P4.5 retina GTTGGAAAGA (7) 2 0.002 P4.5 retina TGTGCGCCCT (4) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GGATGGGGAG (5) 76.7 0.0767 P6.5 retina ATAAAAAAAA (33) 10 0.01 P6.5 retina AAAAAAAAAG (19) 8.3 0.0083 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina TGTGCGCCCT (4) 3.3 0.0033 P6.5 retina TTTGTGTCAA (4) 3.3 0.0033 P6.5 retina AATGAGAAAA (6) 1.7 0.0017 P6.5 retina ATAACAAAAA (6) 1.7 0.0017 P6.5 retina CAGGAGAAGC (3) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GGATGGGGAG (5) 16.7 0.0167 P10.5 crx- retina TGTGCGCCCT (4) 7.4 0.0074 P10.5 crx- retina ATAAAAAAAA (33) 5.6 0.0056 P10.5 crx- retina GCAGGGAGAG (2) 3.7 0.0037 P10.5 crx- retina AAAAAAAAAG (19) 1.9 0.0019 P10.5 crx- retina AATGAGAAAA (6) 1.9 0.0019 P10.5 crx- retina ATGAGTGAGC (3) 1.9 0.0019 P10.5 crx- retina CAGGAAAGCT 1.9 0.0019 P10.5 crx- retina CTGTTTGTAT (2) 1.9 0.0019 P10.5 crx- retina TTTGTGTCAA (4) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GGATGGGGAG (5) 75 0.075 P10.5 crx+ retina AAAAAAAAAG (19) 7.7 0.0077 P10.5 crx+ retina ATAAAAAAAA (33) 3.8 0.0038 P10.5 crx+ retina CAGGAGAAGC (3) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina AATGAGAAAA (6) 1.9 0.0019 P10.5 crx+ retina TGTGCAGAGG (3) 1.9 0.0019 P10.5 crx+ retina TGTGCGCCCT (4) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GGATGGGGAG (5) 18.5 0.0185 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal AAAAAAAAAG (19) 1.9 0.0019 Adult retinal ATGGGGGTGG (3) 1.9 0.0019 Adult retinal CAGGAGAAGC (3) 1.9 0.0019 Adult retinal GCAGGGAGAG (2) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GGATGGGGAG (5) 38.3 0.0383 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL AAAAAAAAAG (19) 1.9 0.0019 ONL AATGAGAAAA (6) 1.9 0.0019 ONL ATAAAAAAAA (33) 1.9 0.0019 ONL CTGTTTGTAT (2) 1.9 0.0019