| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GCGAACTGGT (2) TATTTATTCA (3)
| 4.9 | 0.0049 |
| P8 GC+1d culture | CCCCAAAAAA CCCCCAAAAA (2) CCCCCACAAA CCCCCACTTA GCGAACTGGT (2) GGTCCTTTTG (2) TATTTATTCA (3) TCACCTCCAT
| 67.3 | 0.0673 |
| P8 GC+SHH+1d culture | CCCCAAAAAA CCCCCAAAAA (2) CCCCCACAAA CCCCCACTTA GGTCCTTTTG (2) TATTTATTCA (3)
| 54.9 | 0.0549 |
| 3T3 fibroblasts | GCGAACTGGT (2)
| 3.5 | 0.0035 |
| Hypothalamus | CCCCCAAAAA (2) TATTTATTCA (3) TCACCTCCAT
| 9 | 0.009 |
| E14.5 retina | CCCCAAAAAA TATTTATTCA (3)
| 3.6 | 0.0036 |
| E16.5 retina | TATTTATTCA (3)
| 1.8 | 0.0018 |
| E18.5 retina | GGTCCTTTTG (2) TATTTATTCA (3)
| 3.6 | 0.0036 |
| P2.5 retina | GGTCCTTTTG (2) TATTTATTCA (3)
| 10.5 | 0.0105 |
| P4.5 retina | GGTCCTTTTG (2) TATTTATTCA (3)
| 4 | 0.004 |
| P6.5 retina | TATTTATTCA (3) TCACCTCCAT
| 6.6 | 0.0066 |
| P10.5 crx- retina | TATTTATTCA (3)
| 3.7 | 0.0037 |
| P10.5 crx+ retina | CCCCCAAAAA (2) TATTTATTCA (3)
| 3.8 | 0.0038 |
| Adult retinal | TCACCTCCAT
| 3.7 | 0.0037 |
| ONL | GGTCCTTTTG (2) TATTTATTCA (3) TCACCTCCAT
| 7.6 | 0.0076 |