Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.17436
Trim37
tripartite motif protein 37
11
68729
Mm.17436
D5Mgi13
DNA Segment, Chr 5, Mouse Genome Informatics 13
5
100977
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 108 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAGGGCAAAA (
4
)
21.2
0.0212
P8 Cb GC
GTGATAGCTT
(
2
)
4.9
0.0049
P8 Cb GC
CTAGGCAAGC (
18
)
3.3
0.0033
P8 Cb GC
CTTTTTTCAG
(
3
)
3.3
0.0033
P8 Cb GC
TATTTCAAAA (
14
)
3.3
0.0033
P8 Cb GC
TCTGGGGAAA
(
4
)
3.3
0.0033
Cb medulloblastoma
AAGGGCAAAA (
4
)
57.8
0.0578
Cb medulloblastoma
CTTTTTTCAG
(
3
)
4.6
0.0046
Cb medulloblastoma
TATTTCAAAA (
14
)
4.6
0.0046
Cb medulloblastoma
CTAGGCAAGC (
18
)
2.3
0.0023
Cb medulloblastoma
GAACAGAAAT
(
7
)
2.3
0.0023
Cb medulloblastoma
GTGACTGTCC (
4
)
2.3
0.0023
P8 GC+1d culture
AAGGGCAAAA (
4
)
13.7
0.0137
P8 GC+1d culture
GTGATAGCTT
(
2
)
9.1
0.0091
P8 GC+1d culture
GTGACTGTCC (
4
)
3.4
0.0034
P8 GC+1d culture
CTTTTTTCAG
(
3
)
2.3
0.0023
P8 GC+1d culture
TATTTCAAAA (
14
)
2.3
0.0023
P8 GC+SHH+1d culture
AAGGGCAAAA (
4
)
11.7
0.0117
P8 GC+SHH+1d culture
GTGATAGCTT
(
2
)
4.7
0.0047
P8 GC+SHH+1d culture
GAACAGAAAT
(
7
)
2.3
0.0023
P8 GC+SHH+1d culture
GTGACTGTCC (
4
)
2.3
0.0023
P8 GC+SHH+1d culture
TATTTCAAAA (
14
)
2.3
0.0023
P8 GC+SHH+1d culture
CTTTTTTCAG
(
3
)
1.2
0.0012
3T3 fibroblasts
GTGATAGCTT
(
2
)
7
0.007
E15 cortex
AAGGGCAAAA (
4
)
4.9
0.0049
E15 cortex
GTGATAGCTT
(
2
)
4.9
0.0049
P1 cortex
AAGGGCAAAA (
4
)
4.5
0.0045
Hypothalamus
AAGGGCAAAA (
4
)
12.7
0.0127
Hypothalamus
GTGACTGTCC (
4
)
5.4
0.0054
Hypothalamus
CTTTTTTCAG
(
3
)
3.6
0.0036
Hypothalamus
TATTTCAAAA (
14
)
3.6
0.0036
Hypothalamus
CTAGGCAAGC (
18
)
1.8
0.0018
Hypothalamus
GTGATAGCTT
(
2
)
1.8
0.0018
E12.5 retina
GTGATAGCTT
(
2
)
11.3
0.0113
E12.5 retina
GTGACTGTCC (
4
)
9.4
0.0094
E12.5 retina
CTTTTTTCAG
(
3
)
3.8
0.0038
E12.5 retina
AGCTGTCACT
(
2
)
1.9
0.0019
E12.5 retina
CAGACAAACC
(
4
)
1.9
0.0019
E12.5 retina
CAGGTGGGGG
(
4
)
1.9
0.0019
E12.5 retina
TCTGGGGAAA
(
4
)
1.9
0.0019
E14.5 retina
AAGGGCAAAA (
4
)
9.1
0.0091
E14.5 retina
GTGACTGTCC (
4
)
7.3
0.0073
E14.5 retina
GAACAGAAAT
(
7
)
5.5
0.0055
E14.5 retina
TATTTCAAAA (
14
)
5.5
0.0055
E14.5 retina
AGCTGTCACT
(
2
)
3.6
0.0036
E14.5 retina
CAGACAAACC
(
4
)
1.8
0.0018
E14.5 retina
CTTTTTTCAG
(
3
)
1.8
0.0018
E14.5 retina
GTGATAGCTT
(
2
)
1.8
0.0018
E16.5 retina
GTGACTGTCC (
4
)
5.4
0.0054
E16.5 retina
AAGGGCAAAA (
4
)
3.6
0.0036
E16.5 retina
GTGATAGCTT
(
2
)
3.6
0.0036
E16.5 retina
CAGACAAACC
(
4
)
1.8
0.0018
E16.5 retina
CAGGTGGGGG
(
4
)
1.8
0.0018
E16.5 retina
CTAGGCAAGC (
18
)
1.8
0.0018
E16.5 retina
CTTTTTTCAG
(
3
)
1.8
0.0018
E16.5 retina
GAACAGAAAT
(
7
)
1.8
0.0018
E16.5 retina
TATTTCAAAA (
14
)
1.8
0.0018
E18.5 retina
GTGATAGCTT
(
2
)
9.1
0.0091
E18.5 retina
GTGACTGTCC (
4
)
5.5
0.0055
E18.5 retina
CTAGGCAAGC (
18
)
3.6
0.0036
E18.5 retina
GAACAGAAAT
(
7
)
1.8
0.0018
E18.5 retina
TATTTCAAAA (
14
)
1.8
0.0018
P0.5 retina
GTGATAGCTT
(
2
)
5.9
0.0059
P0.5 retina
AAGGGCAAAA (
4
)
3.9
0.0039
P0.5 retina
GTGACTGTCC (
4
)
3.9
0.0039
P2.5 retina
AAGGGCAAAA (
4
)
7
0.007
P2.5 retina
CTTTTTTCAG
(
3
)
5.3
0.0053
P2.5 retina
CTAGGCAAGC (
18
)
3.5
0.0035
P2.5 retina
TATTTCAAAA (
14
)
3.5
0.0035
P2.5 retina
CAGACAAACC
(
4
)
1.8
0.0018
P2.5 retina
CAGGTGGGGG
(
4
)
1.8
0.0018
P2.5 retina
GAACAGAAAT
(
7
)
1.8
0.0018
P2.5 retina
GTGACTGTCC (
4
)
1.8
0.0018
P2.5 retina
GTGATAGCTT
(
2
)
1.8
0.0018
P4.5 retina
GTGATAGCTT
(
2
)
13.9
0.0139
P4.5 retina
GAACAGAAAT
(
7
)
4
0.004
P4.5 retina
GTGACTGTCC (
4
)
4
0.004
P4.5 retina
CAGACAAACC
(
4
)
2
0.002
P4.5 retina
CAGGTGGGGG
(
4
)
2
0.002
P4.5 retina
TATTTCAAAA (
14
)
2
0.002
P6.5 retina
GTGACTGTCC (
4
)
10
0.01
P6.5 retina
AAGGGCAAAA (
4
)
6.7
0.0067
P6.5 retina
GAACAGAAAT
(
7
)
3.3
0.0033
P6.5 retina
GTGATAGCTT
(
2
)
3.3
0.0033
P6.5 retina
CTAGGCAAGC (
18
)
1.7
0.0017
P6.5 retina
CTTTTTTCAG
(
3
)
1.7
0.0017
P6.5 retina
TATTTCAAAA (
14
)
1.7
0.0017
P10.5 crx- retina
GTGACTGTCC (
4
)
7.4
0.0074
P10.5 crx- retina
GTGATAGCTT
(
2
)
5.6
0.0056
P10.5 crx- retina
AAGGGCAAAA (
4
)
1.9
0.0019
P10.5 crx- retina
CTAGGCAAGC (
18
)
1.9
0.0019
P10.5 crx- retina
CTTTTTTCAG
(
3
)
1.9
0.0019
P10.5 crx+ retina
GTGACTGTCC (
4
)
7.7
0.0077
P10.5 crx+ retina
CTAGGCAAGC (
18
)
5.8
0.0058
P10.5 crx+ retina
CAGACAAACC
(
4
)
3.8
0.0038
P10.5 crx+ retina
GTGATAGCTT
(
2
)
3.8
0.0038
P10.5 crx+ retina
TATTTCAAAA (
14
)
1.9
0.0019
Adult retinal
CTTTTTTCAG
(
3
)
3.7
0.0037
Adult retinal
GTGACTGTCC (
4
)
3.7
0.0037
Adult retinal
AAGGGCAAAA (
4
)
1.9
0.0019
Adult retinal
CTAGGCAAGC (
18
)
1.9
0.0019
Adult retinal
GTGATAGCTT
(
2
)
1.9
0.0019
Adult retinal
TATTTCAAAA (
14
)
1.9
0.0019
ONL
CTAGGCAAGC (
18
)
3.8
0.0038
ONL
CAGACAAACC
(
4
)
1.9
0.0019
ONL
GTGACTGTCC (
4
)
1.9
0.0019
ONL
GTGATAGCTT
(
2
)
1.9
0.0019
ONL
TATTTCAAAA (
14
)
1.9
0.0019
