Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.18962	2010010M04Rik	RIKEN cDNA 2010010M04 gene	18		66546
Mm.18962	C77405	expressed sequence C77405	18		98108
Mm.18962	Catna1	catenin alpha 1	18	18 11.0 cM	12385
Gene Ontology	adherens junction | cell adhesion | cytoskeleton | lamellipodium | protein binding | structural molecule activity | zonula adherens
Human Homolog	CTNNA1[catenin (cadherin-associated protein), alpha 1, 102kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 108 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTCCAGGGCA (6) 22.8 0.0228 P8 Cb GC TTCTGGCTGC (7) 16.3 0.0163 P8 Cb GC GAAGATGAAG (10) 4.9 0.0049 P8 Cb GC CAAGCAGGAC (3) 3.3 0.0033 P8 Cb GC TTTGTGTCAA (4) 3.3 0.0033 P8 Cb GC CTTCCCTGTT (9) 1.6 0.0016 P8 Cb GC TTTGGGCTGC (9) 1.6 0.0016 Cb medulloblastoma TTCTGGCTGC (7) 25.4 0.0254 Cb medulloblastoma CTCCAGGGCA (6) 2.3 0.0023 Cb medulloblastoma GATGTGCTGC (6) 2.3 0.0023 Cb medulloblastoma GCAGCAAAAA (4) 2.3 0.0023 Cb medulloblastoma GGAGCAGAAA (10) 2.3 0.0023 Cb medulloblastoma TTTGGGCTGC (9) 2.3 0.0023 P8 GC+1d culture TTCTGGCTGC (7) 17.1 0.0171 P8 GC+1d culture CTTCCCTGTT (9) 8 0.008 P8 GC+1d culture GTTGCTGTTT (4) 8 0.008 P8 GC+1d culture TTTGTGTCAA (4) 4.6 0.0046 P8 GC+1d culture CTCCAGGGCA (6) 3.4 0.0034 P8 GC+1d culture GGAGCAGAAA (10) 2.3 0.0023 P8 GC+1d culture TTTGGGCTGC (9) 2.3 0.0023 P8 GC+SHH+1d culture TTCTGGCTGC (7) 11.7 0.0117 P8 GC+SHH+1d culture CTCCAGGGCA (6) 7 0.007 P8 GC+SHH+1d culture TTTGTGTCAA (4) 4.7 0.0047 P8 GC+SHH+1d culture GTTGCTGTTT (4) 3.5 0.0035 P8 GC+SHH+1d culture CTTCCCTGTT (9) 2.3 0.0023 P8 GC+SHH+1d culture CAAGCAGGAC (3) 1.2 0.0012 3T3 fibroblasts CTCCAGGGCA (6) 24.5 0.0245 3T3 fibroblasts TTCTGGCTGC (7) 14 0.014 3T3 fibroblasts CTTCCCTGTT (9) 10.5 0.0105 3T3 fibroblasts GTTGCTGTTT (4) 7 0.007 E15 cortex TTCTGGCTGC (7) 14.8 0.0148 E15 cortex CTCCAGGGCA (6) 9.9 0.0099 E15 cortex GCAGCAAAAA (4) 4.9 0.0049 E15 cortex TTTGGGCTGC (9) 4.9 0.0049 P1 cortex TCCCTATTAT (3) 22.7 0.0227 P1 cortex GTTGCTGTTT (4) 13.6 0.0136 P1 cortex TTCTGGCTGC (7) 13.6 0.0136 P1 cortex CTCCAGGGCA (6) 4.5 0.0045 Hypothalamus TTCTGGCTGC (7) 16.3 0.0163 Hypothalamus CTCCAGGGCA (6) 3.6 0.0036 Hypothalamus ATTAAAATTA (4) 1.8 0.0018 Hypothalamus CTTCCCTGTT (9) 1.8 0.0018 Hypothalamus TGGTCACCTG (7) 1.8 0.0018 Hypothalamus TTTGTGTTAA (6) 1.8 0.0018 E12.5 retina TTCTGGCTGC (7) 15 0.015 E12.5 retina CTCCAGGGCA (6) 13.1 0.0131 E12.5 retina CTTCCCTGTT (9) 3.8 0.0038 E12.5 retina TTTGTGTTAA (6) 1.9 0.0019 E14.5 retina CTCCAGGGCA (6) 20 0.02 E14.5 retina TTCTGGCTGC (7) 10.9 0.0109 E14.5 retina TTTGTGTCAA (4) 7.3 0.0073 E14.5 retina CTTCCCTGTT (9) 1.8 0.0018 E14.5 retina GTTGCTGTTT (4) 1.8 0.0018 E16.5 retina CTCCAGGGCA (6) 23.5 0.0235 E16.5 retina TTCTGGCTGC (7) 16.3 0.0163 E16.5 retina CTTCCCTGTT (9) 3.6 0.0036 E16.5 retina TCCCTATTAT (3) 3.6 0.0036 E16.5 retina GCAGCAAAAA (4) 1.8 0.0018 E16.5 retina GGAGCAGAAA (10) 1.8 0.0018 E16.5 retina TTTGTGTCAA (4) 1.8 0.0018 E18.5 retina CTCCAGGGCA (6) 18.2 0.0182 E18.5 retina TTTGTGTCAA (4) 12.7 0.0127 E18.5 retina TTCTGGCTGC (7) 9.1 0.0091 P0.5 retina CTCCAGGGCA (6) 21.6 0.0216 P0.5 retina TTCTGGCTGC (7) 17.7 0.0177 P0.5 retina TCCCTATTAT (3) 5.9 0.0059 P0.5 retina CTTCCCTGTT (9) 2 0.002 P0.5 retina GATGTGCTGC (6) 2 0.002 P0.5 retina GTTGCTGTTT (4) 2 0.002 P0.5 retina TTTGTGTTAA (6) 2 0.002 P2.5 retina CTCCAGGGCA (6) 19.4 0.0194 P2.5 retina TTCTGGCTGC (7) 17.6 0.0176 P2.5 retina TTTGTGTCAA (4) 5.3 0.0053 P2.5 retina CTTCCCTGTT (9) 3.5 0.0035 P2.5 retina GATGTGCTGC (6) 1.8 0.0018 P2.5 retina GTTGCTGTTT (4) 1.8 0.0018 P2.5 retina TGGTCACCTG (7) 1.8 0.0018 P4.5 retina CTCCAGGGCA (6) 27.7 0.0277 P4.5 retina TTCTGGCTGC (7) 17.8 0.0178 P4.5 retina TTTGTGTCAA (4) 5.9 0.0059 P4.5 retina CTTCCCTGTT (9) 4 0.004 P4.5 retina GTTGCTGTTT (4) 2 0.002 P4.5 retina TTTGGGCTGC (9) 2 0.002 P6.5 retina TTCTGGCTGC (7) 15 0.015 P6.5 retina CTCCAGGGCA (6) 13.3 0.0133 P6.5 retina GTTGCTGTTT (4) 6.7 0.0067 P6.5 retina TTTGGGCTGC (9) 3.3 0.0033 P6.5 retina TTTGTGTCAA (4) 3.3 0.0033 P6.5 retina ATTAAAATTA (4) 1.7 0.0017 P6.5 retina CAAGCAGGAC (3) 1.7 0.0017 P6.5 retina GGAGCAGAAA (10) 1.7 0.0017 P6.5 retina TCCCTATTAT (3) 1.7 0.0017 P10.5 crx- retina TTCTGGCTGC (7) 26 0.026 P10.5 crx- retina CTTCCCTGTT (9) 3.7 0.0037 P10.5 crx- retina CTCCAGGGCA (6) 1.9 0.0019 P10.5 crx- retina GTTGCTGTTT (4) 1.9 0.0019 P10.5 crx- retina TTTGTGTCAA (4) 1.9 0.0019 P10.5 crx+ retina TTCTGGCTGC (7) 17.3 0.0173 P10.5 crx+ retina CTTCCCTGTT (9) 3.8 0.0038 P10.5 crx+ retina TGGTCACCTG (7) 1.9 0.0019 Adult retinal TTCTGGCTGC (7) 24.1 0.0241 Adult retinal GTTGCTGTTT (4) 9.3 0.0093 Adult retinal CTCCAGGGCA (6) 1.9 0.0019 Adult retinal CTTCCCTGTT (9) 1.9 0.0019 Adult retinal TCCCTATTAT (3) 1.9 0.0019 ONL TTCTGGCTGC (7) 9.6 0.0096 ONL ATTAAAATTA (4) 1.9 0.0019 ONL GTTGCTGTTT (4) 1.9 0.0019