Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1970	Ppp1ca	protein phosphatase 1, catalytic subunit, alpha isoform	7		19045
Gene Ontology	branching morphogenesis | cell growth and/or maintenance | CTD phosphatase activity | cytokinesis | cytoplasm | female meiosis | glycogen metabolism | glycogen metabolism | hydrolase activity | lung development | manganese ion binding | metabolism | myosin phosphatase activity | nucleoplasm | phosphoprotein phosphatase activity | protein amino acid dephosphorylation | protein amino acid dephosphorylation | protein amino acid dephosphorylation | protein binding | protein phosphatase type 1 activity | protein phosphatase type 1 activity | protein phosphatase type 1 activity | protein phosphatase type 2A activity | protein phosphatase type 2C activity | protein serine/threonine phosphatase activity | protein serine/threonine phosphatase activity | regulation of protein biosynthesis
Human Homolog	PPP1CA[protein phosphatase 1, catalytic subunit, alpha isoform]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 155 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTGGCAGCC (4) 50.6 0.0506 P8 Cb GC AAGAAAAAAA (27) 9.8 0.0098 P8 Cb GC GGTTTCTTCC (3) 9.8 0.0098 P8 Cb GC GCAGAGTTTT (3) 4.9 0.0049 P8 Cb GC CAAGGCTGGA (2) 3.3 0.0033 P8 Cb GC CAGCAATGTG (4) 1.6 0.0016 P8 Cb GC TGTTCCTTCC (2) 1.6 0.0016 Cb medulloblastoma GCTGGCAGCC (4) 83.2 0.0832 Cb medulloblastoma GCAGAGTTTT (3) 34.7 0.0347 Cb medulloblastoma AAGAAAAAAA (27) 11.6 0.0116 Cb medulloblastoma CAAGGCTGGA (2) 9.2 0.0092 Cb medulloblastoma AATTAAGTGG (2) 2.3 0.0023 Cb medulloblastoma GCTGGCAACC (2) 2.3 0.0023 Cb medulloblastoma GCTGGCAGGC (3) 2.3 0.0023 Cb medulloblastoma GTGTTTCCTT (6) 2.3 0.0023 P8 GC+1d culture GCTGGCAGCC (4) 79.9 0.0799 P8 GC+1d culture GCAGAGTTTT (3) 19.4 0.0194 P8 GC+1d culture GGTCACACTG (5) 5.7 0.0057 P8 GC+1d culture AAGAAAAAAA (27) 4.6 0.0046 P8 GC+1d culture GGTTTCTTCC (3) 3.4 0.0034 P8 GC+1d culture CAGCAATGTG (4) 1.1 0.0011 P8 GC+1d culture GAGGCTATTT (2) 1.1 0.0011 P8 GC+1d culture GCTGGCAACC (2) 1.1 0.0011 P8 GC+1d culture GCTGGCAGGC (3) 1.1 0.0011 P8 GC+1d culture GTGTTTCCTT (6) 1.1 0.0011 P8 GC+SHH+1d culture GCTGGCAGCC (4) 100.7 0.1007 P8 GC+SHH+1d culture GCAGAGTTTT (3) 17.6 0.0176 P8 GC+SHH+1d culture CAAGGCTGGA (2) 7 0.007 P8 GC+SHH+1d culture GGTTTCTTCC (3) 4.7 0.0047 P8 GC+SHH+1d culture AAGAAAAAAA (27) 3.5 0.0035 P8 GC+SHH+1d culture AGGCCACAGA 2.3 0.0023 P8 GC+SHH+1d culture ATGAGTGTGG (2) 2.3 0.0023 P8 GC+SHH+1d culture GAGGCTATTT (2) 2.3 0.0023 P8 GC+SHH+1d culture TGTTCCTTCC (2) 2.3 0.0023 P8 GC+SHH+1d culture CAGCAATGTG (4) 1.2 0.0012 P8 GC+SHH+1d culture GAGGTGGAAA (11) 1.2 0.0012 P8 GC+SHH+1d culture GCCTCTGTCT (2) 1.2 0.0012 3T3 fibroblasts GCTGGCAGCC (4) 56.1 0.0561 3T3 fibroblasts CAAGGCTGGA (2) 14 0.014 3T3 fibroblasts GGTCACACTG (5) 3.5 0.0035 3T3 fibroblasts GTGTTTCCTT (6) 3.5 0.0035 E15 cortex GCTGGCAGCC (4) 54.4 0.0544 E15 cortex AAGAAAAAAA (27) 24.7 0.0247 E15 cortex GCAGAGTTTT (3) 24.7 0.0247 E15 cortex GCTGGCAGCA (4) 4.9 0.0049 P1 cortex GCTGGCAGCC (4) 18.2 0.0182 P1 cortex AAGAAAAAAA (27) 9.1 0.0091 P1 cortex GGTTTCTTCC (3) 4.5 0.0045 Hypothalamus GCAGAGTTTT (3) 32.6 0.0326 Hypothalamus GCTGGCAGCC (4) 27.2 0.0272 Hypothalamus CAAGGCTGGA (2) 3.6 0.0036 Hypothalamus GAGGTGGAAA (11) 3.6 0.0036 Hypothalamus AAGAAAAAAA (27) 1.8 0.0018 Hypothalamus CAGCAATGTG (4) 1.8 0.0018 Hypothalamus GGTCACACTG (5) 1.8 0.0018 Hypothalamus TGTTCCTTCC (2) 1.8 0.0018 E12.5 retina GCTGGCAGCC (4) 58.2 0.0582 E12.5 retina CAAGGCTGGA (2) 13.1 0.0131 E12.5 retina GGTTTCTTCC (3) 11.3 0.0113 E12.5 retina GCAGAGTTTT (3) 9.4 0.0094 E12.5 retina GAGGTGGAAA (11) 3.8 0.0038 E12.5 retina AAGAAAAAAA (27) 1.9 0.0019 E12.5 retina CAGCAATGTG (4) 1.9 0.0019 E14.5 retina GCTGGCAGCC (4) 67.4 0.0674 E14.5 retina GCAGAGTTTT (3) 10.9 0.0109 E14.5 retina CAAGGCTGGA (2) 7.3 0.0073 E14.5 retina GGTTTCTTCC (3) 5.5 0.0055 E14.5 retina AAGAAAAAAA (27) 1.8 0.0018 E14.5 retina GAGGTGGAAA (11) 1.8 0.0018 E14.5 retina GCTGGCAACC (2) 1.8 0.0018 E14.5 retina GCTGGCAGCA (4) 1.8 0.0018 E14.5 retina GTGTTTCCTT (6) 1.8 0.0018 E16.5 retina GCTGGCAGCC (4) 70.6 0.0706 E16.5 retina CAAGGCTGGA (2) 7.2 0.0072 E16.5 retina GCAGAGTTTT (3) 7.2 0.0072 E16.5 retina GAGGTGGAAA (11) 3.6 0.0036 E16.5 retina GGTTTCTTCC (3) 3.6 0.0036 E16.5 retina AAGAAAAAAA (27) 1.8 0.0018 E16.5 retina AGGCCACAGA 1.8 0.0018 E16.5 retina GCCAGTAATA (2) 1.8 0.0018 E16.5 retina TGTTCCTTCC (2) 1.8 0.0018 E18.5 retina GCTGGCAGCC (4) 105.5 0.1055 E18.5 retina GCAGAGTTTT (3) 18.2 0.0182 E18.5 retina CAAGGCTGGA (2) 10.9 0.0109 E18.5 retina AAGAAAAAAA (27) 5.5 0.0055 E18.5 retina GAGGCTATTT (2) 3.6 0.0036 E18.5 retina GGTTTCTTCC (3) 3.6 0.0036 E18.5 retina TTCAGCCACT (4) 3.6 0.0036 E18.5 retina GAGGTGGAAA (11) 1.8 0.0018 E18.5 retina GTGTTTCCTT (6) 1.8 0.0018 E18.5 retina GTTGGCAGCC (2) 1.8 0.0018 P0.5 retina GCTGGCAGCC (4) 56.9 0.0569 P0.5 retina GGTTTCTTCC (3) 7.9 0.0079 P0.5 retina CAAGGCTGGA (2) 5.9 0.0059 P0.5 retina AAGAAAAAAA (27) 2 0.002 P0.5 retina AATTAAGTGG (2) 2 0.002 P0.5 retina GAGGTGGAAA (11) 2 0.002 P0.5 retina GCAGAGTTTT (3) 2 0.002 P0.5 retina GGTCACACTG (5) 2 0.002 P2.5 retina GCTGGCAGCC (4) 58.1 0.0581 P2.5 retina GGTTTCTTCC (3) 14.1 0.0141 P2.5 retina GCAGAGTTTT (3) 12.3 0.0123 P2.5 retina GAGGTGGAAA (11) 8.8 0.0088 P2.5 retina AAGAAAAAAA (27) 5.3 0.0053 P2.5 retina ATGAGTGTGG (2) 1.8 0.0018 P2.5 retina CAAGGCTGGA (2) 1.8 0.0018 P2.5 retina GTTGGCAGCC (2) 1.8 0.0018 P2.5 retina TGTTCCTTCC (2) 1.8 0.0018 P2.5 retina TTCAGCCACT (4) 1.8 0.0018 P4.5 retina GCTGGCAGCC (4) 67.4 0.0674 P4.5 retina GCAGAGTTTT (3) 27.7 0.0277 P4.5 retina AAGAAAAAAA (27) 5.9 0.0059 P4.5 retina GAGGTGGAAA (11) 5.9 0.0059 P4.5 retina GGTTTCTTCC (3) 4 0.004 P4.5 retina AATTAAGTGG (2) 2 0.002 P4.5 retina GGTCACACTG (5) 2 0.002 P6.5 retina GCTGGCAGCC (4) 46.7 0.0467 P6.5 retina GCAGAGTTTT (3) 11.7 0.0117 P6.5 retina CAAGGCTGGA (2) 8.3 0.0083 P6.5 retina AAGAAAAAAA (27) 3.3 0.0033 P6.5 retina GCTGGCAGGC (3) 3.3 0.0033 P6.5 retina AATTAAGTGG (2) 1.7 0.0017 P6.5 retina GAGGTGGAAA (11) 1.7 0.0017 P6.5 retina GGTCACACTG (5) 1.7 0.0017 P10.5 crx- retina GCTGGCAGCC (4) 66.9 0.0669 P10.5 crx- retina GCAGAGTTTT (3) 11.1 0.0111 P10.5 crx- retina CAAGGCTGGA (2) 7.4 0.0074 P10.5 crx- retina GAGGTGGAAA (11) 3.7 0.0037 P10.5 crx- retina AAGAAAAAAA (27) 1.9 0.0019 P10.5 crx- retina GCCAGTAATA (2) 1.9 0.0019 P10.5 crx- retina GCTGGCAGGC (3) 1.9 0.0019 P10.5 crx- retina GGTTTCTTCC (3) 1.9 0.0019 P10.5 crx- retina GTTGGCAGCC (2) 1.9 0.0019 P10.5 crx+ retina GCTGGCAGCC (4) 69.2 0.0692 P10.5 crx+ retina GCAGAGTTTT (3) 25 0.025 P10.5 crx+ retina CAAGGCTGGA (2) 5.8 0.0058 P10.5 crx+ retina AATTAAGTGG (2) 3.8 0.0038 P10.5 crx+ retina GCTGGCAGGC (3) 3.8 0.0038 P10.5 crx+ retina AAGAAAAAAA (27) 1.9 0.0019 P10.5 crx+ retina GCCTCTGTCT (2) 1.9 0.0019 Adult retinal GCTGGCAGCC (4) 20.4 0.0204 Adult retinal GCAGAGTTTT (3) 11.1 0.0111 Adult retinal AATTAAGTGG (2) 3.7 0.0037 Adult retinal CAAGGCTGGA (2) 3.7 0.0037 Adult retinal AAGAAAAAAA (27) 1.9 0.0019 Adult retinal GCCTCTGTCT (2) 1.9 0.0019 Adult retinal GGTTTCTTCC (3) 1.9 0.0019 ONL GCTGGCAGCC (4) 5.7 0.0057 ONL AAGAAAAAAA (27) 3.8 0.0038 ONL AATTAAGTGG (2) 3.8 0.0038 ONL GCTGGCAGGC (3) 3.8 0.0038 ONL CAAGGCTGGA (2) 1.9 0.0019 ONL GCCAGTAATA (2) 1.9 0.0019 ONL GTGTTTCCTT (6) 1.9 0.0019 ONL TGTTCCTTCC (2) 1.9 0.0019