Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.200608	Clu	clusterin	14	14 D1 (14 28.0 cM)	12759
Gene Ontology	cell death | extracellular space
Human Homolog	CLU[clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 129 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTCCAGCCTT (2) 53.8 0.0538 P8 Cb GC AATTGGTTCA (3) 9.8 0.0098 P8 Cb GC TCTCCAGGTG (3) 9.8 0.0098 P8 Cb GC GCATCCTGTA (2) 3.3 0.0033 P8 Cb GC GAAAAAAGAA (9) 1.6 0.0016 P8 Cb GC TCTCCAAGGC (2) 1.6 0.0016 P8 Cb GC TCTCCAGGCG 1.6 0.0016 P8 Cb GC TTTCAGCCCT (2) 1.6 0.0016 Cb medulloblastoma TTCCAGCCTT (2) 159.6 0.1596 Cb medulloblastoma TCTCCAGGCG 30.1 0.0301 Cb medulloblastoma TCTCCAGGTG (3) 6.9 0.0069 Cb medulloblastoma TCTCCAAGGC (2) 2.3 0.0023 Cb medulloblastoma TGGAGTTCTC (4) 2.3 0.0023 Cb medulloblastoma TTCCCTCCCC (5) 2.3 0.0023 Cb medulloblastoma TTTCAGCCCT (2) 2.3 0.0023 P8 GC+1d culture TTCCAGCCTT (2) 83.3 0.0833 P8 GC+1d culture TCTCCAGGCG 20.5 0.0205 P8 GC+1d culture TCTCCAGGTG (3) 17.1 0.0171 P8 GC+1d culture TCTCCAAGGC (2) 3.4 0.0034 P8 GC+1d culture AATTGGTTCA (3) 1.1 0.0011 P8 GC+1d culture GAAGTCAGAA (3) 1.1 0.0011 P8 GC+1d culture TGGAGTTCTC (4) 1.1 0.0011 P8 GC+SHH+1d culture TTCCAGCCTT (2) 65.6 0.0656 P8 GC+SHH+1d culture AATTGGTTCA (3) 11.7 0.0117 P8 GC+SHH+1d culture TCTCCAGGCG 9.4 0.0094 P8 GC+SHH+1d culture TCTCCAAGGC (2) 8.2 0.0082 P8 GC+SHH+1d culture TCTCCAGGTG (3) 7 0.007 P8 GC+SHH+1d culture TTTCAGCCCT (2) 2.3 0.0023 P8 GC+SHH+1d culture GAAGTCAGAA (3) 1.2 0.0012 P8 GC+SHH+1d culture GAATGTCCAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TTCCAGCCCT (5) 1.2 0.0012 3T3 fibroblasts GAAGTCAGAA (3) 14 0.014 3T3 fibroblasts TTCCAGCCTT (2) 7 0.007 E15 cortex TTCCAGCCTT (2) 34.6 0.0346 E15 cortex CGGACAGCTT 4.9 0.0049 E15 cortex TCTCCAGGCG 4.9 0.0049 E15 cortex TTCCCTCCCC (5) 4.9 0.0049 P1 cortex TTCCAGCCTT (2) 40.9 0.0409 P1 cortex GAATGTCCAG (3) 4.5 0.0045 P1 cortex TCTCCAAGGC (2) 4.5 0.0045 Hypothalamus TTCCAGCCTT (2) 125 0.125 Hypothalamus TCTCCAGGCG 58 0.058 Hypothalamus TGGAGTTCTC (4) 5.4 0.0054 Hypothalamus CGGACAGCTT 1.8 0.0018 Hypothalamus GAATGTCCAG (3) 1.8 0.0018 Hypothalamus TCTCCAAGGC (2) 1.8 0.0018 Hypothalamus TCTTCCTCCC (3) 1.8 0.0018 Hypothalamus TTCCCGCCTT (3) 1.8 0.0018 E12.5 retina TTCCAGCCTT (2) 22.5 0.0225 E12.5 retina AATTGGTTCA (3) 11.3 0.0113 E12.5 retina GAATGTCCAG (3) 3.8 0.0038 E12.5 retina TCTCCAAGGC (2) 1.9 0.0019 E12.5 retina TTTCAGCCCT (2) 1.9 0.0019 E14.5 retina TTCCAGCCTT (2) 47.4 0.0474 E14.5 retina AATTGGTTCA (3) 16.4 0.0164 E14.5 retina GAAGTCAGAA (3) 3.6 0.0036 E14.5 retina CTGTGAGCAG (2) 1.8 0.0018 E14.5 retina GAAAAAAGAA (9) 1.8 0.0018 E14.5 retina GAATGTCCAG (3) 1.8 0.0018 E14.5 retina TTCCCGCCTT (3) 1.8 0.0018 E14.5 retina TTTCAGCCCT (2) 1.8 0.0018 E16.5 retina TTCCAGCCTT (2) 45.3 0.0453 E16.5 retina AATTGGTTCA (3) 9.1 0.0091 E16.5 retina TCTCCAAGGC (2) 3.6 0.0036 E16.5 retina TGAAAAGTGC (2) 3.6 0.0036 E16.5 retina TTCCCTCCCC (5) 3.6 0.0036 E16.5 retina GAATGTCCAG (3) 1.8 0.0018 E18.5 retina TTCCAGCCTT (2) 41.8 0.0418 E18.5 retina AATTGGTTCA (3) 12.7 0.0127 E18.5 retina TTTCAGCCCT (2) 3.6 0.0036 E18.5 retina GCATCCTGTA (2) 1.8 0.0018 E18.5 retina TCTCCAAGGC (2) 1.8 0.0018 E18.5 retina TCTTCCTCCC (3) 1.8 0.0018 P0.5 retina CATCTAGAGG (11) 25.5 0.0255 P0.5 retina TTCCAGCCTT (2) 19.6 0.0196 P0.5 retina AATTGGTTCA (3) 3.9 0.0039 P0.5 retina TCTCCAAGGC (2) 3.9 0.0039 P0.5 retina GAATGTCCAG (3) 2 0.002 P0.5 retina TCTCCAGGCG 2 0.002 P0.5 retina TTTCAGCCCT (2) 2 0.002 P2.5 retina TTCCAGCCTT (2) 58.1 0.0581 P2.5 retina TCTCCAAGGC (2) 8.8 0.0088 P2.5 retina AATTGGTTCA (3) 5.3 0.0053 P2.5 retina GTGCCCCCCC (3) 3.5 0.0035 P2.5 retina CATCTAGAGG (11) 1.8 0.0018 P2.5 retina CTGTGAGCAG (2) 1.8 0.0018 P2.5 retina GAATGTCCAG (3) 1.8 0.0018 P2.5 retina TCTCCAGGCG 1.8 0.0018 P2.5 retina TGAAAAGTGC (2) 1.8 0.0018 P4.5 retina TTCCAGCCTT (2) 53.5 0.0535 P4.5 retina GTGCCCCCCC (3) 4 0.004 P4.5 retina TCTCCAAGGC (2) 4 0.004 P4.5 retina TTCCAGCCCT (5) 4 0.004 P4.5 retina CATCTAGAGG (11) 2 0.002 P4.5 retina GAAGTCAGAA (3) 2 0.002 P4.5 retina GAATGTCCAG (3) 2 0.002 P4.5 retina GCATCCTGTA (2) 2 0.002 P4.5 retina TCTCCAGGTG (3) 2 0.002 P6.5 retina TTCCAGCCTT (2) 53.4 0.0534 P6.5 retina TCTCCAAGGC (2) 5 0.005 P6.5 retina TTCCCGCCTT (3) 5 0.005 P6.5 retina CGGACAGCTT 1.7 0.0017 P6.5 retina CTGTGAGCAG (2) 1.7 0.0017 P6.5 retina GAATGTCCAG (3) 1.7 0.0017 P6.5 retina GTGCCCCCCC (3) 1.7 0.0017 P6.5 retina TCTCCAGGCG 1.7 0.0017 P10.5 crx- retina TTCCAGCCTT (2) 94.7 0.0947 P10.5 crx- retina TCTCCAGGCG 29.7 0.0297 P10.5 crx- retina TCTCCAAGGC (2) 11.1 0.0111 P10.5 crx- retina TTCCCTCCCC (5) 3.7 0.0037 P10.5 crx+ retina TTCCAGCCTT (2) 80.7 0.0807 P10.5 crx+ retina TCTCCAGGCG 13.5 0.0135 P10.5 crx+ retina TCTCCAAGGC (2) 5.8 0.0058 P10.5 crx+ retina GAAAAAAGAA (9) 3.8 0.0038 P10.5 crx+ retina TTCCCGCCTT (3) 3.8 0.0038 P10.5 crx+ retina CATCTAGAGG (11) 1.9 0.0019 P10.5 crx+ retina GCATCCTGTA (2) 1.9 0.0019 Adult retinal TTCCAGCCTT (2) 50 0.05 Adult retinal TCTCCAGGCG 44.4 0.0444 Adult retinal CATCTAGAGG (11) 7.4 0.0074 Adult retinal TCTCCAAGGC (2) 3.7 0.0037 Adult retinal TCTTCCTCCC (3) 1.9 0.0019 Adult retinal TGGAGTTCTC (4) 1.9 0.0019 ONL TCTCCAGGCG 7.7 0.0077 ONL TTCCAGCCTT (2) 5.7 0.0057 ONL TCTCCAAGGC (2) 3.8 0.0038 ONL GAAAAAAGAA (9) 1.9 0.0019 ONL TCTCCAGGTG (3) 1.9 0.0019 ONL TCTTCCTCCC (3) 1.9 0.0019