Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.203962	Bat3	HLA-B-associated transcript 3	17	17 19.03 cM	224727
Gene Ontology	apoptosis | cytoplasm | hydrogen transport | hydrogen-exporting ATPase activity, phosphorylative mechanism | membrane | protein binding | protein binding | regulation of apoptosis
Human Homolog	BAT3[HLA-B associated transcript 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 189 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGAGGTCCA (3) 13.1 0.0131 P8 Cb GC GCTTCTTCTG (7) 13.1 0.0131 P8 Cb GC TGTGTTGTTT (4) 9.8 0.0098 P8 Cb GC GAATTCAAAA (4) 4.9 0.0049 P8 Cb GC GTTGGAACCT (8) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC CCTGCCAAGA (3) 3.3 0.0033 P8 Cb GC GAGCCGAGTG 3.3 0.0033 P8 Cb GC CCTGTGGGTC (2) 1.6 0.0016 P8 Cb GC TGCTGCACTG (3) 1.6 0.0016 Cb medulloblastoma CAGAGGTCCA (3) 32.4 0.0324 Cb medulloblastoma GCTTCTTCTG (7) 23.1 0.0231 Cb medulloblastoma CCTGCCAAGA (3) 4.6 0.0046 Cb medulloblastoma TGTGTTGTTT (4) 4.6 0.0046 Cb medulloblastoma GAATTCAAAA (4) 2.3 0.0023 Cb medulloblastoma GCCATTTCCA 2.3 0.0023 Cb medulloblastoma TGCTGCACTG (3) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture CAGAGGTCCA (3) 30.8 0.0308 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture CCTGCCAAGA (3) 12.6 0.0126 P8 GC+1d culture GCTTCTTCTG (7) 11.4 0.0114 P8 GC+1d culture GAATTCAAAA (4) 4.6 0.0046 P8 GC+1d culture TGTGTTGTTT (4) 4.6 0.0046 P8 GC+1d culture GTTGGAACCT (8) 3.4 0.0034 P8 GC+1d culture GCTTCTCCCA (6) 2.3 0.0023 P8 GC+1d culture CACTCTCAGA (5) 1.1 0.0011 P8 GC+1d culture CATTGTCTTT (6) 1.1 0.0011 P8 GC+1d culture CCAATGAGGT (2) 1.1 0.0011 P8 GC+1d culture CCACTGAGGT 1.1 0.0011 P8 GC+1d culture CCTGTGGGTC (2) 1.1 0.0011 P8 GC+SHH+1d culture CAGAGGTCCA (3) 22.2 0.0222 P8 GC+SHH+1d culture GCTTCTTCTG (7) 10.5 0.0105 P8 GC+SHH+1d culture TGTGTTGTTT (4) 10.5 0.0105 P8 GC+SHH+1d culture CCTGCCAAGA (3) 8.2 0.0082 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture GTTGGAACCT (8) 3.5 0.0035 P8 GC+SHH+1d culture CATTGTCTTT (6) 2.3 0.0023 P8 GC+SHH+1d culture CACTCTCAGA (5) 1.2 0.0012 P8 GC+SHH+1d culture CCACTGAGGT 1.2 0.0012 P8 GC+SHH+1d culture CCTGTGGGTC (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTTCTCCCA (6) 1.2 0.0012 3T3 fibroblasts CCTGCCAAGA (3) 24.5 0.0245 3T3 fibroblasts GAGCCGAGTG 7 0.007 3T3 fibroblasts GCTTCTTCTG (7) 7 0.007 3T3 fibroblasts GTTGGAACCT (8) 3.5 0.0035 E15 cortex CCTGCCAAGA (3) 34.6 0.0346 E15 cortex CCTGTGGGTC (2) 9.9 0.0099 E15 cortex GAATTCAAAA (4) 4.9 0.0049 E15 cortex GAGCTGAGTG (3) 4.9 0.0049 E15 cortex GCTTCTTCTG (7) 4.9 0.0049 E15 cortex TGTGTTGTTT (4) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex CCTGTGGGTC (2) 45.5 0.0455 P1 cortex CCTGCCAAGA (3) 18.2 0.0182 P1 cortex TGTGTTGTTT (4) 9.1 0.0091 P1 cortex GCTTCTTCTG (7) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus CCTGTGGGTC (2) 18.1 0.0181 Hypothalamus GCTTCTTCTG (7) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TGTGTTGTTT (4) 5.4 0.0054 Hypothalamus GCAGCCCGGG (2) 3.6 0.0036 Hypothalamus GCCTTCTTCT (5) 3.6 0.0036 Hypothalamus CACTCTCAGA (5) 1.8 0.0018 Hypothalamus CCACTGAGGT 1.8 0.0018 Hypothalamus CCTGCCAAGA (3) 1.8 0.0018 Hypothalamus GCCATTTCCA 1.8 0.0018 Hypothalamus GGAGTCAGAA 1.8 0.0018 E12.5 retina CCTGCCAAGA (3) 11.3 0.0113 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GCTTCTTCTG (7) 5.6 0.0056 E12.5 retina GTTGGAACCT (8) 3.8 0.0038 E12.5 retina TGTGTTGTTT (4) 3.8 0.0038 E12.5 retina CCTGCCAAAA (3) 1.9 0.0019 E12.5 retina CCTGTGGGTC (2) 1.9 0.0019 E12.5 retina GTTCTGCATC (2) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GGAGTCAGAA 7.3 0.0073 E14.5 retina GCTTCTTCTG (7) 5.5 0.0055 E14.5 retina CCTGCCAAGA (3) 3.6 0.0036 E14.5 retina TGTGTTGTTT (4) 3.6 0.0036 E14.5 retina CCACTGAGGT 1.8 0.0018 E14.5 retina CCTGCCAAAA (3) 1.8 0.0018 E14.5 retina GCAGCCCGGG (2) 1.8 0.0018 E14.5 retina GCCATTTCCA 1.8 0.0018 E14.5 retina GCCTTCTTCT (5) 1.8 0.0018 E14.5 retina GCTTCTCCCA (6) 1.8 0.0018 E14.5 retina GTTGGAACCT (8) 1.8 0.0018 E16.5 retina CCTGCCAAGA (3) 16.3 0.0163 E16.5 retina GCTTCTTCTG (7) 12.7 0.0127 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina CAGAGGTCCA (3) 3.6 0.0036 E16.5 retina GCTTCTCCCA (6) 3.6 0.0036 E16.5 retina TGTGTTGTTT (4) 3.6 0.0036 E16.5 retina CACTCTCAGA (5) 1.8 0.0018 E16.5 retina CCTGCCAAAA (3) 1.8 0.0018 E16.5 retina CCTGTGGGTC (2) 1.8 0.0018 E16.5 retina GCCTTCTTCT (5) 1.8 0.0018 E16.5 retina GTTCTGCATC (2) 1.8 0.0018 E18.5 retina GCTTCTTCTG (7) 10.9 0.0109 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina CCTGCCAAGA (3) 5.5 0.0055 E18.5 retina TGTGTTGTTT (4) 3.6 0.0036 E18.5 retina CCTGTGGGTC (2) 1.8 0.0018 E18.5 retina GAGCCGAGTG 1.8 0.0018 E18.5 retina GTTGGAACCT (8) 1.8 0.0018 P0.5 retina CCTGCCAAGA (3) 21.6 0.0216 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TGTGTTGTTT (4) 5.9 0.0059 P0.5 retina CCTGTGGGTC (2) 3.9 0.0039 P0.5 retina GCTTCTTCTG (7) 3.9 0.0039 P0.5 retina CACTCTCAGA (5) 2 0.002 P0.5 retina GTTGGAACCT (8) 2 0.002 P2.5 retina GCTTCTTCTG (7) 14.1 0.0141 P2.5 retina CCTGCCAAGA (3) 10.6 0.0106 P2.5 retina TGTGTTGTTT (4) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina CACTCTCAGA (5) 3.5 0.0035 P2.5 retina CAGAGGTCCA (3) 3.5 0.0035 P2.5 retina CATTGTCTTT (6) 3.5 0.0035 P2.5 retina CCTGTGGGTC (2) 1.8 0.0018 P4.5 retina CACTCTCAGA (5) 13.9 0.0139 P4.5 retina GCTTCTTCTG (7) 11.9 0.0119 P4.5 retina TGTGTTGTTT (4) 11.9 0.0119 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina GTTGGAACCT (8) 7.9 0.0079 P4.5 retina CCTGCCAAGA (3) 4 0.004 P4.5 retina CAGAGGTCCA (3) 2 0.002 P4.5 retina CCAATGAGGT (2) 2 0.002 P4.5 retina CCACTGAGGT 2 0.002 P4.5 retina CCTGCCAAAA (3) 2 0.002 P4.5 retina CCTGTGGGTC (2) 2 0.002 P4.5 retina GGAGTCAGAA 2 0.002 P6.5 retina CCTGCCAAGA (3) 25 0.025 P6.5 retina GCTTCTTCTG (7) 16.7 0.0167 P6.5 retina TGTGTTGTTT (4) 13.3 0.0133 P6.5 retina CACTCTCAGA (5) 11.7 0.0117 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina CCTGTGGGTC (2) 5 0.005 P6.5 retina CAGAGGTCCA (3) 3.3 0.0033 P6.5 retina GAATTCAAAA (4) 3.3 0.0033 P6.5 retina CATTGTCTTT (6) 1.7 0.0017 P6.5 retina GCCATTTCCA 1.7 0.0017 P6.5 retina GTTGGAACCT (8) 1.7 0.0017 P10.5 crx- retina CCTGTGGGTC (2) 20.4 0.0204 P10.5 crx- retina CCTGCCAAGA (3) 9.3 0.0093 P10.5 crx- retina TGTGTTGTTT (4) 9.3 0.0093 P10.5 crx- retina GCTTCTTCTG (7) 3.7 0.0037 P10.5 crx- retina TAAGGTTTGG 3.7 0.0037 P10.5 crx- retina CACTCTCAGA (5) 1.9 0.0019 P10.5 crx- retina CAGAGGTCCA (3) 1.9 0.0019 P10.5 crx- retina CCAATGAGGT (2) 1.9 0.0019 P10.5 crx- retina GAATTCAAAA (4) 1.9 0.0019 P10.5 crx- retina GACAGACCTG (3) 1.9 0.0019 P10.5 crx- retina GAGCTGAGTG (3) 1.9 0.0019 P10.5 crx- retina GGAGTCAGAA 1.9 0.0019 P10.5 crx+ retina GCTTCTTCTG (7) 13.5 0.0135 P10.5 crx+ retina CACTCTCAGA (5) 11.5 0.0115 P10.5 crx+ retina TGTGTTGTTT (4) 5.8 0.0058 P10.5 crx+ retina CCTGTGGGTC (2) 3.8 0.0038 P10.5 crx+ retina GACAGACCTG (3) 3.8 0.0038 P10.5 crx+ retina GTTGGAACCT (8) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina CAGAGGTCCA (3) 1.9 0.0019 P10.5 crx+ retina CCTGCCAAGA (3) 1.9 0.0019 P10.5 crx+ retina GAGCTGAGTG (3) 1.9 0.0019 P10.5 crx+ retina GCAGCCCGGG (2) 1.9 0.0019 P10.5 crx+ retina TAAGGTTTGG 1.9 0.0019 Adult retinal CACTCTCAGA (5) 29.6 0.0296 Adult retinal CCTGTGGGTC (2) 16.7 0.0167 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal CCTGCCAAGA (3) 5.6 0.0056 Adult retinal GGAGTCAGAA 3.7 0.0037 Adult retinal GACAGACCTG (3) 1.9 0.0019 Adult retinal GCTTCTTCTG (7) 1.9 0.0019 Adult retinal GTTGGAACCT (8) 1.9 0.0019 Adult retinal TGCTGCACTG (3) 1.9 0.0019 ONL CACTCTCAGA (5) 11.5 0.0115 ONL CCTGCCAAGA (3) 9.6 0.0096 ONL GCTTCTTCTG (7) 7.7 0.0077 ONL GCCATTTCCA 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL CCTGTGGGTC (2) 1.9 0.0019 ONL GACAGACCTG (3) 1.9 0.0019 ONL GGAGTCAGAA 1.9 0.0019 ONL GTTCTGCATC (2) 1.9 0.0019 ONL GTTGGAACCT (8) 1.9 0.0019 ONL TGTGTTGTTT (4) 1.9 0.0019