Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.213025	0610041G09Rik	RIKEN cDNA 0610041G09 gene	19		68377
Mm.213025	Acta2	actin, alpha 2, smooth muscle, aorta	19		11475
Gene Ontology	actin cytoskeleton | actin filament | cytoskeleton | cytoskeleton organization and biogenesis | motor activity | muscle development | structural constituent of cytoskeleton | structural molecule activity
Human Homolog	ACTA2[actin, alpha 2, smooth muscle, aorta]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 114 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGATCAAGA (18) 55.5 0.0555 P8 Cb GC GAGAAGATCT (13) 19.6 0.0196 P8 Cb GC AAGATCCTGA (11) 6.5 0.0065 P8 Cb GC AAACTGGAAT (6) 3.3 0.0033 P8 Cb GC TACCCAGGCA (8) 3.3 0.0033 P8 Cb GC TGCTACCCTT (4) 1.6 0.0016 Cb medulloblastoma AAGTGTGAAA (4) 16.2 0.0162 Cb medulloblastoma AAGATCAAGA (18) 13.9 0.0139 Cb medulloblastoma AAACTGGAAT (6) 2.3 0.0023 Cb medulloblastoma AAGATCCTGA (11) 2.3 0.0023 Cb medulloblastoma AAGATCCTGG (7) 2.3 0.0023 Cb medulloblastoma GAGAAGATCT (13) 2.3 0.0023 Cb medulloblastoma TAACTCTGGA (3) 2.3 0.0023 Cb medulloblastoma TGCTACCCTT (4) 2.3 0.0023 P8 GC+1d culture AAGATCAAGA (18) 24 0.024 P8 GC+1d culture AAGTGTGAAA (4) 3.4 0.0034 P8 GC+1d culture TGCTACCCTT (4) 3.4 0.0034 P8 GC+1d culture AAACTGGAAT (6) 2.3 0.0023 P8 GC+1d culture GCGCAAGGCG (2) 2.3 0.0023 P8 GC+1d culture AAAGACCTTG (7) 1.1 0.0011 P8 GC+1d culture GAAGAGCCAG (7) 1.1 0.0011 P8 GC+1d culture TACCCAGGCA (8) 1.1 0.0011 P8 GC+SHH+1d culture AAGATCAAGA (18) 17.6 0.0176 P8 GC+SHH+1d culture TGCTACCCTT (4) 3.5 0.0035 P8 GC+SHH+1d culture GAGAAGATCT (13) 2.3 0.0023 P8 GC+SHH+1d culture AAACTGGAAT (6) 1.2 0.0012 P8 GC+SHH+1d culture AAGATCCTGA (11) 1.2 0.0012 P8 GC+SHH+1d culture AAGTGTGAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture GCGCAAGGCG (2) 1.2 0.0012 3T3 fibroblasts TGCTACCCTT (4) 59.6 0.0596 3T3 fibroblasts AAGATCAAGA (18) 56.1 0.0561 3T3 fibroblasts GAGAAGATCT (13) 7 0.007 3T3 fibroblasts AAGATCCTGA (11) 3.5 0.0035 3T3 fibroblasts CGTGACTTTT (3) 3.5 0.0035 3T3 fibroblasts GCGCAAGGCG (2) 3.5 0.0035 E15 cortex AAGATCAAGA (18) 94 0.094 E15 cortex TACCCAGGCA (8) 19.8 0.0198 E15 cortex AAACTGGAAT (6) 14.8 0.0148 E15 cortex AAGATCCTGA (11) 4.9 0.0049 E15 cortex GAGAAGATCT (13) 4.9 0.0049 P1 cortex AAGATCAAGA (18) 63.6 0.0636 Hypothalamus AAGTGTGAAA (4) 10.9 0.0109 Hypothalamus AAGATCAAGA (18) 5.4 0.0054 Hypothalamus GAAGAGCCAG (7) 3.6 0.0036 Hypothalamus TGCTACCCTT (4) 3.6 0.0036 Hypothalamus AAACTGGAAT (6) 1.8 0.0018 Hypothalamus AAGATCCTGA (11) 1.8 0.0018 Hypothalamus AAGATCCTGG (7) 1.8 0.0018 Hypothalamus GAGAAGATCT (13) 1.8 0.0018 Hypothalamus TAACCCAGGC (8) 1.8 0.0018 Hypothalamus TAACTCTGGA (3) 1.8 0.0018 E12.5 retina AAGATCAAGA (18) 50.7 0.0507 E12.5 retina AAACTGGAAT (6) 1.9 0.0019 E12.5 retina AAGTGTGAAA (4) 1.9 0.0019 E12.5 retina AGATCTGACT (3) 1.9 0.0019 E12.5 retina TAACTCTGGA (3) 1.9 0.0019 E14.5 retina AAGATCAAGA (18) 7.3 0.0073 E14.5 retina AAACTGGAAT (6) 3.6 0.0036 E14.5 retina AAGATCCTGA (11) 1.8 0.0018 E14.5 retina AAGATCCTGG (7) 1.8 0.0018 E14.5 retina AAGTGTGAAA (4) 1.8 0.0018 E14.5 retina AGATCTGACT (3) 1.8 0.0018 E14.5 retina TAACTCTGGA (3) 1.8 0.0018 E14.5 retina TACCCAGGCA (8) 1.8 0.0018 E16.5 retina AAACTGGAAT (6) 10.9 0.0109 E16.5 retina AAGATCAAGA (18) 7.2 0.0072 E16.5 retina AAGTGTGAAA (4) 3.6 0.0036 E16.5 retina TACCCAGGCA (8) 1.8 0.0018 E18.5 retina AAGATCAAGA (18) 7.3 0.0073 E18.5 retina AAGTGTGAAA (4) 5.5 0.0055 E18.5 retina TACCCAGGCA (8) 3.6 0.0036 E18.5 retina AAACTGGAAT (6) 1.8 0.0018 E18.5 retina AAGATCCTGG (7) 1.8 0.0018 P0.5 retina AAGATCAAGA (18) 27.5 0.0275 P0.5 retina AAACTGGAAT (6) 2 0.002 P0.5 retina AAGTGTGAAA (4) 2 0.002 P0.5 retina TACCCAGGCA (8) 2 0.002 P0.5 retina TGCTACCCTT (4) 2 0.002 P2.5 retina AAGATCAAGA (18) 5.3 0.0053 P2.5 retina AAGTGTGAAA (4) 5.3 0.0053 P2.5 retina TAACTCTGGA (3) 1.8 0.0018 P2.5 retina TGCTACCCTT (4) 1.8 0.0018 P4.5 retina AAGATCAAGA (18) 11.9 0.0119 P4.5 retina AAACTGGAAT (6) 5.9 0.0059 P4.5 retina AAGTGTGAAA (4) 4 0.004 P4.5 retina GCGCAAGGCG (2) 2 0.002 P4.5 retina TAACTCTGGA (3) 2 0.002 P6.5 retina AAGATCAAGA (18) 6.7 0.0067 P6.5 retina AAGTGTGAAA (4) 6.7 0.0067 P6.5 retina TGCTACCCTT (4) 3.3 0.0033 P6.5 retina AAACTGGAAT (6) 1.7 0.0017 P6.5 retina GAGAAGATCT (13) 1.7 0.0017 P6.5 retina TACCCAGGCA (8) 1.7 0.0017 P10.5 crx- retina AAGTGTGAAA (4) 13 0.013 P10.5 crx- retina AAACTGGAAT (6) 7.4 0.0074 P10.5 crx- retina TAACCCAGGC (8) 3.7 0.0037 P10.5 crx- retina AAGATCAAGA (18) 1.9 0.0019 P10.5 crx- retina AAGATCCTGG (7) 1.9 0.0019 P10.5 crx- retina AGATCTGACT (3) 1.9 0.0019 P10.5 crx+ retina AAGATCAAGA (18) 11.5 0.0115 P10.5 crx+ retina AAGTGTGAAA (4) 5.8 0.0058 P10.5 crx+ retina GAAGAGCCAG (7) 1.9 0.0019 P10.5 crx+ retina GAGAAGATCT (13) 1.9 0.0019 P10.5 crx+ retina TACCCAGGCA (8) 1.9 0.0019 Adult retinal AAGATCAAGA (18) 3.7 0.0037 Adult retinal AAGTGTGAAA (4) 3.7 0.0037 Adult retinal AAGATCCTGG (7) 1.9 0.0019 Adult retinal TAACTCTGGA (3) 1.9 0.0019 Adult retinal TGCTACCCTT (4) 1.9 0.0019 ONL AAGATCAAGA (18) 5.7 0.0057 ONL AAAGACCTTG (7) 3.8 0.0038 ONL AAGATCCTGG (7) 1.9 0.0019 ONL AAGTGTGAAA (4) 1.9 0.0019 ONL AGATCTGACT (3) 1.9 0.0019