Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2136	Cox4i1	cytochrome c oxidase subunit IV isoform 1	8	8 64.0 cM	12857
Gene Ontology	cytochrome-c oxidase activity | electron transport | inner membrane | integral to membrane | mitochondrial inner membrane | mitochondrion | oxidoreductase activity | respiratory chain complex IV (sensu Eukarya)
Human Homolog	COX4I1[cytochrome c oxidase subunit IV isoform 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 237 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTAATAAAAG (7) 76.7 0.0767 P8 Cb GC TTAATAAAAG (4) 42.4 0.0424 P8 Cb GC CTAATAAACG (6) 24.5 0.0245 P8 Cb GC CTGGGAAGCT (6) 8.2 0.0082 P8 Cb GC CTGGAAAGCT (4) 3.3 0.0033 P8 Cb GC GGTCCACTGG (3) 3.3 0.0033 P8 Cb GC GTAATAAAAG 3.3 0.0033 P8 Cb GC GTCGGCCGCC (25) 3.3 0.0033 P8 Cb GC TCCCCCCCCC (8) 3.3 0.0033 P8 Cb GC ATGGACTTTA (13) 1.6 0.0016 P8 Cb GC CCAATAAAAG 1.6 0.0016 P8 Cb GC CTATTAAAAG (4) 1.6 0.0016 P8 Cb GC GGAATGTTGT (2) 1.6 0.0016 P8 Cb GC GGAGTGTTGT (3) 1.6 0.0016 P8 Cb GC TCACGATGCT (3) 1.6 0.0016 Cb medulloblastoma CTAATAAAAG (7) 78.6 0.0786 Cb medulloblastoma TTAATAAAAG (4) 41.6 0.0416 Cb medulloblastoma CTAATAAACG (6) 11.6 0.0116 Cb medulloblastoma CTATTAAAAG (4) 11.6 0.0116 Cb medulloblastoma CTGGGAAGCT (6) 4.6 0.0046 Cb medulloblastoma CTTAATAAAA (7) 4.6 0.0046 Cb medulloblastoma GCTTTCTTCC (4) 4.6 0.0046 Cb medulloblastoma GTAATAAAAG 4.6 0.0046 Cb medulloblastoma CCGAGGGAGT 2.3 0.0023 Cb medulloblastoma GACACTGGCA (7) 2.3 0.0023 P8 GC+1d culture CTAATAAAAG (7) 73.1 0.0731 P8 GC+1d culture TTAATAAAAG (4) 44.5 0.0445 P8 GC+1d culture CTAATAAACG (6) 11.4 0.0114 P8 GC+1d culture CTTAATAAAA (7) 6.8 0.0068 P8 GC+1d culture GTAATAAAAG 4.6 0.0046 P8 GC+1d culture TCCCCCCCCC (8) 3.4 0.0034 P8 GC+1d culture ATGGACTTTA (13) 2.3 0.0023 P8 GC+1d culture CCGAGGGAGT 2.3 0.0023 P8 GC+1d culture AAGGCCAACC (3) 1.1 0.0011 P8 GC+1d culture AGAAAGTTCA (5) 1.1 0.0011 P8 GC+1d culture CTAATAAAAA (4) 1.1 0.0011 P8 GC+1d culture CTAATAAAGA (2) 1.1 0.0011 P8 GC+1d culture CTAATAGAAG (3) 1.1 0.0011 P8 GC+1d culture GTCGGCCGCC (25) 1.1 0.0011 P8 GC+SHH+1d culture CTAATAAAAG (7) 77.3 0.0773 P8 GC+SHH+1d culture TTAATAAAAG (4) 53.9 0.0539 P8 GC+SHH+1d culture CTAATAAACG (6) 23.4 0.0234 P8 GC+SHH+1d culture GTAATAAAAG 7 0.007 P8 GC+SHH+1d culture GTCGGCCGCC (25) 4.7 0.0047 P8 GC+SHH+1d culture CTGGGAAGCT (6) 2.3 0.0023 P8 GC+SHH+1d culture CTTAATAAAA (7) 2.3 0.0023 P8 GC+SHH+1d culture AAATTTAAAG 1.2 0.0012 P8 GC+SHH+1d culture AACGCCAACC (4) 1.2 0.0012 P8 GC+SHH+1d culture AAGGCCTACC (3) 1.2 0.0012 P8 GC+SHH+1d culture ATGGACTTTA (13) 1.2 0.0012 P8 GC+SHH+1d culture CCAATAAAAG 1.2 0.0012 P8 GC+SHH+1d culture CTATAAAAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture GCTTTCTTCC (4) 1.2 0.0012 3T3 fibroblasts AACGCCAACC (4) 7 0.007 3T3 fibroblasts GTGCTGCAGG (4) 7 0.007 3T3 fibroblasts CTAATAAAAG (7) 3.5 0.0035 3T3 fibroblasts CTGGGAAGCT (6) 3.5 0.0035 3T3 fibroblasts GGTCCACTGG (3) 3.5 0.0035 3T3 fibroblasts GTCGGCCGCC (25) 3.5 0.0035 3T3 fibroblasts TTAATAAAAG (4) 3.5 0.0035 E15 cortex AACGCCAACC (4) 4.9 0.0049 E15 cortex CTGGAAAGCT (4) 4.9 0.0049 E15 cortex CTGGAAGCTG (5) 4.9 0.0049 P1 cortex CTAATAAAAG (7) 54.5 0.0545 P1 cortex AAATTTAAAG 13.6 0.0136 P1 cortex CTAATAAACG (6) 13.6 0.0136 P1 cortex CTTAATAAAA (7) 9.1 0.0091 P1 cortex TTAATAAAAG (4) 9.1 0.0091 P1 cortex CCAATAAAAG 4.5 0.0045 P1 cortex CTAATAAAAA (4) 4.5 0.0045 P1 cortex CTAATAAAGA (2) 4.5 0.0045 Hypothalamus CTAATAAAAG (7) 125 0.125 Hypothalamus TTAATAAAAG (4) 63.4 0.0634 Hypothalamus AAGGCCAACC (3) 16.3 0.0163 Hypothalamus CTAATAAACG (6) 14.5 0.0145 Hypothalamus GCTTTCTTCC (4) 12.7 0.0127 Hypothalamus GTGCTGCAGG (4) 12.7 0.0127 Hypothalamus GGCCACATCA (6) 7.2 0.0072 Hypothalamus GTAATAAAAG 7.2 0.0072 Hypothalamus CCGAGGGAGT 5.4 0.0054 Hypothalamus CTGGAAGCTG (5) 5.4 0.0054 Hypothalamus CTATTAAAAG (4) 3.6 0.0036 Hypothalamus CTGGGAAGCT (6) 3.6 0.0036 Hypothalamus CTTAATAAAA (7) 3.6 0.0036 Hypothalamus TCACGATGCT (3) 3.6 0.0036 Hypothalamus AGAAAGTTCA (5) 1.8 0.0018 Hypothalamus CCAATAAAAG 1.8 0.0018 Hypothalamus GGTCCACTGG (3) 1.8 0.0018 Hypothalamus GTCGGCCGCC (25) 1.8 0.0018 E12.5 retina CTAATAAAAG (7) 48.8 0.0488 E12.5 retina CTAATAAACG (6) 24.4 0.0244 E12.5 retina TTAATAAAAG (4) 11.3 0.0113 E12.5 retina CTTAATAAAA (7) 5.6 0.0056 E12.5 retina GGTCCACTGG (3) 5.6 0.0056 E12.5 retina GTAATAAAAG 5.6 0.0056 E12.5 retina AAGGCCTACC (3) 1.9 0.0019 E12.5 retina AATGGCTGGC (6) 1.9 0.0019 E12.5 retina CCAATAAAAG 1.9 0.0019 E12.5 retina CTGGAAAGCT (4) 1.9 0.0019 E12.5 retina CTGGGAAGCT (6) 1.9 0.0019 E12.5 retina GGGGATCAGT (9) 1.9 0.0019 E12.5 retina GTCGGCCGCC (25) 1.9 0.0019 E14.5 retina CTAATAAAAG (7) 91.1 0.0911 E14.5 retina TTAATAAAAG (4) 38.3 0.0383 E14.5 retina CTAATAAACG (6) 16.4 0.0164 E14.5 retina GTGCTGCAGG (4) 9.1 0.0091 E14.5 retina CCGAGGGAGT 5.5 0.0055 E14.5 retina GTAATAAAAG 5.5 0.0055 E14.5 retina AAGGCCTACC (3) 3.6 0.0036 E14.5 retina GTCGGCCGCC (25) 3.6 0.0036 E14.5 retina AACGCCAACC (4) 1.8 0.0018 E14.5 retina CTATAAAAAA (4) 1.8 0.0018 E14.5 retina CTTAATAAAA (7) 1.8 0.0018 E14.5 retina GGAATGTTGT (2) 1.8 0.0018 E14.5 retina GGCCACATCA (6) 1.8 0.0018 E16.5 retina CTAATAAAAG (7) 63.4 0.0634 E16.5 retina TTAATAAAAG (4) 43.5 0.0435 E16.5 retina CTAATAAACG (6) 38 0.038 E16.5 retina CTTAATAAAA (7) 10.9 0.0109 E16.5 retina GTAATAAAAG 9.1 0.0091 E16.5 retina CCGAGGGAGT 5.4 0.0054 E16.5 retina AACGCCAACC (4) 1.8 0.0018 E16.5 retina AAGGCCTACC (3) 1.8 0.0018 E16.5 retina CTGGAAAGCT (4) 1.8 0.0018 E16.5 retina GGCCACATCA (6) 1.8 0.0018 E16.5 retina GGTCCACTGG (3) 1.8 0.0018 E16.5 retina GTGCTGCAGG (4) 1.8 0.0018 E16.5 retina TTCTTTATTG (5) 1.8 0.0018 E18.5 retina CTAATAAAAG (7) 111 0.111 E18.5 retina TTAATAAAAG (4) 65.5 0.0655 E18.5 retina CTAATAAACG (6) 40 0.04 E18.5 retina GTAATAAAAG 12.7 0.0127 E18.5 retina CTTAATAAAA (7) 3.6 0.0036 E18.5 retina GTGCTGCAGG (4) 3.6 0.0036 E18.5 retina CTAATAAAGA (2) 1.8 0.0018 E18.5 retina GCTTTCTTCC (4) 1.8 0.0018 E18.5 retina GGAATGTTGT (2) 1.8 0.0018 E18.5 retina GGCCACATCA (6) 1.8 0.0018 E18.5 retina TCCCCCCCCC (8) 1.8 0.0018 P0.5 retina CTAATAAAAG (7) 49.1 0.0491 P0.5 retina GTAATAAAAG 5.9 0.0059 P0.5 retina GTCGGCCGCC (25) 5.9 0.0059 P0.5 retina TTAATAAAAG (4) 5.9 0.0059 P0.5 retina CTAATAAACG (6) 3.9 0.0039 P0.5 retina AATGGCTGGC (6) 2 0.002 P0.5 retina CCGAGGGAGT 2 0.002 P0.5 retina CTGGGAAGCT (6) 2 0.002 P0.5 retina CTTAATAAAA (7) 2 0.002 P0.5 retina GTGCTGCAGG (4) 2 0.002 P2.5 retina CTAATAAAAG (7) 88 0.088 P2.5 retina TTAATAAAAG (4) 42.2 0.0422 P2.5 retina CTAATAAACG (6) 22.9 0.0229 P2.5 retina GTAATAAAAG 7 0.007 P2.5 retina CTGGGAAGCT (6) 5.3 0.0053 P2.5 retina TTCTTTATTG (5) 5.3 0.0053 P2.5 retina CTAATAAAAA (4) 3.5 0.0035 P2.5 retina GTCGGCCGCC (25) 3.5 0.0035 P2.5 retina AACGCCAACC (4) 1.8 0.0018 P2.5 retina ATGGACTTTA (13) 1.8 0.0018 P2.5 retina CCAATAAAAG 1.8 0.0018 P2.5 retina CTAATAGAAG (3) 1.8 0.0018 P2.5 retina CTGGAAGCTG (5) 1.8 0.0018 P2.5 retina CTTAATAAAA (7) 1.8 0.0018 P2.5 retina GGACCTCCTT 1.8 0.0018 P2.5 retina GGCCACATCA (6) 1.8 0.0018 P4.5 retina CTAATAAAAG (7) 95.1 0.0951 P4.5 retina TTAATAAAAG (4) 71.3 0.0713 P4.5 retina CTAATAAACG (6) 37.6 0.0376 P4.5 retina GTAATAAAAG 21.8 0.0218 P4.5 retina CTTAATAAAA (7) 11.9 0.0119 P4.5 retina CCAATAAAAG 4 0.004 P4.5 retina CTAAATAAAA (2) 4 0.004 P4.5 retina CTAATAAAAA (4) 4 0.004 P4.5 retina CTGGGAAGCT (6) 4 0.004 P4.5 retina GTGCTGCAGG (4) 4 0.004 P4.5 retina AAGGCCAACC (3) 2 0.002 P4.5 retina GACACTGGCA (7) 2 0.002 P4.5 retina GGCCACATCA (6) 2 0.002 P4.5 retina GTCGGCCGCC (25) 2 0.002 P6.5 retina CTAATAAAAG (7) 105 0.105 P6.5 retina TTAATAAAAG (4) 40 0.04 P6.5 retina CTAATAAACG (6) 26.7 0.0267 P6.5 retina GTAATAAAAG 13.3 0.0133 P6.5 retina CTTAATAAAA (7) 3.3 0.0033 P6.5 retina AACGCCAACC (4) 1.7 0.0017 P6.5 retina AGAAAGTTCA (5) 1.7 0.0017 P6.5 retina ATGGACTTTA (13) 1.7 0.0017 P6.5 retina CCAATAAAAG 1.7 0.0017 P6.5 retina CTATAAAAAA (4) 1.7 0.0017 P6.5 retina GGACCTCCTT 1.7 0.0017 P6.5 retina GGTCCACTGG (3) 1.7 0.0017 P6.5 retina GTGCTGCAGG (4) 1.7 0.0017 P10.5 crx- retina CTAATAAAAG (7) 53.9 0.0539 P10.5 crx- retina TTAATAAAAG (4) 13 0.013 P10.5 crx- retina CTAATAAACG (6) 5.6 0.0056 P10.5 crx- retina AATGGCTGGC (6) 3.7 0.0037 P10.5 crx- retina CTTAATAAAA (7) 3.7 0.0037 P10.5 crx- retina GGAGTGTTGT (3) 3.7 0.0037 P10.5 crx- retina GTCGGCCGCC (25) 3.7 0.0037 P10.5 crx- retina GTGCTGCAGG (4) 3.7 0.0037 P10.5 crx- retina CCAATAAAAG 1.9 0.0019 P10.5 crx- retina CCGAGGGAGT 1.9 0.0019 P10.5 crx- retina GGGGATCAGT (9) 1.9 0.0019 P10.5 crx- retina GTAATAAAAG 1.9 0.0019 P10.5 crx+ retina CTAATAAAAG (7) 61.5 0.0615 P10.5 crx+ retina TTAATAAAAG (4) 26.9 0.0269 P10.5 crx+ retina CTAATAAACG (6) 7.7 0.0077 P10.5 crx+ retina CCAATAAAAG 3.8 0.0038 P10.5 crx+ retina CTTAATAAAA (7) 3.8 0.0038 P10.5 crx+ retina GTAATAAAAG 3.8 0.0038 P10.5 crx+ retina GTCGGCCGCC (25) 3.8 0.0038 P10.5 crx+ retina AACGCCAACC (4) 1.9 0.0019 P10.5 crx+ retina AAGGCCTACC (3) 1.9 0.0019 P10.5 crx+ retina CTATTAAAAG (4) 1.9 0.0019 P10.5 crx+ retina CTGGAAAGCT (4) 1.9 0.0019 P10.5 crx+ retina GACACTGGCA (7) 1.9 0.0019 P10.5 crx+ retina GGCCACATCA (6) 1.9 0.0019 P10.5 crx+ retina GGGGATCAGT (9) 1.9 0.0019 P10.5 crx+ retina GTGCTGCAGG (4) 1.9 0.0019 P10.5 crx+ retina TCACGATGCT (3) 1.9 0.0019 Adult retinal CTAATAAAAG (7) 14.8 0.0148 Adult retinal TTAATAAAAG (4) 7.4 0.0074 Adult retinal CTAATAAACG (6) 3.7 0.0037 Adult retinal CTATTAAAAG (4) 3.7 0.0037 Adult retinal CTTAATAAAA (7) 3.7 0.0037 Adult retinal CTAAATAAAA (2) 1.9 0.0019 Adult retinal CTATAAAAAA (4) 1.9 0.0019 Adult retinal GCTTTCTTCC (4) 1.9 0.0019 Adult retinal GTCGGCCGCC (25) 1.9 0.0019 ONL CTAATAAAAG (7) 26.8 0.0268 ONL TTAATAAAAG (4) 17.2 0.0172 ONL CTAATAAACG (6) 5.7 0.0057 ONL CTAATAAAAA (4) 1.9 0.0019 ONL CTGGGAAGCT (6) 1.9 0.0019 ONL GACACTGGCA (7) 1.9 0.0019 ONL GCTTTCTTCC (4) 1.9 0.0019 ONL GGACCTCCTT 1.9 0.0019