Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.231395	Ctsd	cathepsin D	7	4 50.0 cM	13033
Gene Ontology	aspartic-type endopeptidase activity | cathepsin D activity | hydrolase activity | lysosome | mitochondrion | pepsin A activity | peptidase activity | proteolysis and peptidolysis
Human Homolog	CTSD[cathepsin D (lysosomal aspartyl protease)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 136 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTCAGCCTG (4) 27.7 0.0277 P8 Cb GC GACCAGTGGA (6) 9.8 0.0098 P8 Cb GC AAAAAAAGAA (15) 1.6 0.0016 P8 Cb GC CCTTTCCAGG (4) 1.6 0.0016 P8 Cb GC GGAATGGACA (7) 1.6 0.0016 Cb medulloblastoma CCTCAGCCTG (4) 27.7 0.0277 Cb medulloblastoma GACCAGTGGA (6) 20.8 0.0208 Cb medulloblastoma TCAGCTCTGA (3) 4.6 0.0046 Cb medulloblastoma AAAAAAAGAA (15) 2.3 0.0023 Cb medulloblastoma AAGACTCCCG (3) 2.3 0.0023 Cb medulloblastoma CCTTCCCAGA (3) 2.3 0.0023 Cb medulloblastoma TTCTGTTCTG (3) 2.3 0.0023 P8 GC+1d culture CCTCAGCCTG (4) 35.4 0.0354 P8 GC+1d culture GACCAGTGGA (6) 4.6 0.0046 P8 GC+1d culture GGTACCCCTC (3) 3.4 0.0034 P8 GC+1d culture CCTTCCCAGA (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAGAA (15) 1.1 0.0011 P8 GC+1d culture CAGCTCATCG (2) 1.1 0.0011 P8 GC+1d culture CCTCACCCTG (4) 1.1 0.0011 P8 GC+1d culture GACCCAGTGA (2) 1.1 0.0011 P8 GC+1d culture GCCTTCCAGT 1.1 0.0011 P8 GC+1d culture GGAATGGACA (7) 1.1 0.0011 P8 GC+1d culture GGTCCCCACA (3) 1.1 0.0011 P8 GC+1d culture TTAGTCTGAC (3) 1.1 0.0011 P8 GC+SHH+1d culture CCTCAGCCTG (4) 31.6 0.0316 P8 GC+SHH+1d culture GACCAGTGGA (6) 3.5 0.0035 P8 GC+SHH+1d culture CAGCTCATCG (2) 2.3 0.0023 P8 GC+SHH+1d culture GCCTTCCAGT 2.3 0.0023 P8 GC+SHH+1d culture GGTACCCCTC (3) 2.3 0.0023 P8 GC+SHH+1d culture CCTCACCCTG (4) 1.2 0.0012 P8 GC+SHH+1d culture CCTTCCCAGG (3) 1.2 0.0012 P8 GC+SHH+1d culture CCTTTCCAGG (4) 1.2 0.0012 P8 GC+SHH+1d culture GGAGGGCGGC (3) 1.2 0.0012 3T3 fibroblasts CCTCAGCCTG (4) 143.7 0.1437 3T3 fibroblasts GACCAGTGGA (6) 10.5 0.0105 3T3 fibroblasts CCTCACCCTG (4) 7 0.007 3T3 fibroblasts GGTACCCCTC (3) 3.5 0.0035 E15 cortex CCTCAGCCTG (4) 34.6 0.0346 E15 cortex CCTTCCCAGA (3) 9.9 0.0099 E15 cortex GACCAGTGGA (6) 9.9 0.0099 E15 cortex CCTCACCCTG (4) 4.9 0.0049 E15 cortex GACCCAGTGA (2) 4.9 0.0049 P1 cortex CCTCAGCCTG (4) 13.6 0.0136 P1 cortex CCTTCCCAGA (3) 9.1 0.0091 Hypothalamus CCTCAGCCTG (4) 10.9 0.0109 Hypothalamus TTAGTCTGAC (3) 9.1 0.0091 Hypothalamus GACCAGTGGA (6) 7.2 0.0072 Hypothalamus CAGCTCATCG (2) 3.6 0.0036 Hypothalamus GGAGGGCGGC (3) 3.6 0.0036 Hypothalamus TCAGCTCTGA (3) 3.6 0.0036 Hypothalamus TTCTGTTCTG (3) 3.6 0.0036 Hypothalamus AAAAAAAGAA (15) 1.8 0.0018 Hypothalamus AAGACTCCCG (3) 1.8 0.0018 Hypothalamus CCTTCCCAGA (3) 1.8 0.0018 Hypothalamus GGAATGGACA (7) 1.8 0.0018 Hypothalamus TAAGTCCTGA (2) 1.8 0.0018 E12.5 retina CCTCAGCCTG (4) 18.8 0.0188 E12.5 retina GACCAGTGGA (6) 9.4 0.0094 E12.5 retina AAAAAAAGAA (15) 1.9 0.0019 E12.5 retina CCTTCCCAGA (3) 1.9 0.0019 E12.5 retina CCTTCCCAGG (3) 1.9 0.0019 E12.5 retina GGTACCCCTC (3) 1.9 0.0019 E14.5 retina CCTCAGCCTG (4) 3.6 0.0036 E14.5 retina CCTTCCCAGG (3) 3.6 0.0036 E14.5 retina GACCAGTGGA (6) 3.6 0.0036 E14.5 retina TCAGCTCTGA (3) 3.6 0.0036 E14.5 retina CCTTCCAGGA (5) 1.8 0.0018 E14.5 retina GGTACCCCTC (3) 1.8 0.0018 E14.5 retina GGTCCCCACA (3) 1.8 0.0018 E14.5 retina TAAGTCCTGA (2) 1.8 0.0018 E16.5 retina CCTCAGCCTG (4) 9.1 0.0091 E16.5 retina CCTTCCAGGA (5) 1.8 0.0018 E16.5 retina CCTTCCCAGA (3) 1.8 0.0018 E16.5 retina CCTTCCCAGG (3) 1.8 0.0018 E16.5 retina CCTTTCCAGG (4) 1.8 0.0018 E16.5 retina GCTCAGCCCT (2) 1.8 0.0018 E16.5 retina GGTACCCCTC (3) 1.8 0.0018 E16.5 retina GGTCCCCACA (3) 1.8 0.0018 E18.5 retina CCTCAGCCTG (4) 14.6 0.0146 E18.5 retina GACCAGTGGA (6) 1.8 0.0018 E18.5 retina GCCTTCCAGT 1.8 0.0018 E18.5 retina GGTACCCCTC (3) 1.8 0.0018 E18.5 retina TAAGTCCTGA (2) 1.8 0.0018 P0.5 retina GACCAGTGGA (6) 7.9 0.0079 P0.5 retina CCTCACCCTG (4) 5.9 0.0059 P0.5 retina CCTCAGCCTG (4) 5.9 0.0059 P0.5 retina GGAGGGCGGC (3) 2 0.002 P2.5 retina CCTCAGCCTG (4) 14.1 0.0141 P2.5 retina AAAAAAAGAA (15) 7 0.007 P2.5 retina CAGCTCATCG (2) 1.8 0.0018 P2.5 retina CCTTTCCAGG (4) 1.8 0.0018 P2.5 retina GACCAGTGGA (6) 1.8 0.0018 P2.5 retina GACCCAGTGA (2) 1.8 0.0018 P2.5 retina GCTCAGCCCT (2) 1.8 0.0018 P2.5 retina GGTACCCCTC (3) 1.8 0.0018 P2.5 retina TCAGCTCTGA (3) 1.8 0.0018 P4.5 retina CCTCAGCCTG (4) 11.9 0.0119 P4.5 retina GACCAGTGGA (6) 4 0.004 P4.5 retina GGAGGGCGGC (3) 4 0.004 P4.5 retina CAGCTCATCG (2) 2 0.002 P4.5 retina GCCTTCCAGT 2 0.002 P4.5 retina GCTCAGCCCT (2) 2 0.002 P4.5 retina GGTACCCCTC (3) 2 0.002 P4.5 retina TCAGCTCTGA (3) 2 0.002 P6.5 retina CCTCAGCCTG (4) 26.7 0.0267 P6.5 retina GACCAGTGGA (6) 5 0.005 P6.5 retina CCTTTCCAGG (4) 3.3 0.0033 P6.5 retina GGAGGGCGGC (3) 1.7 0.0017 P6.5 retina GGTACCCCTC (3) 1.7 0.0017 P6.5 retina GGTCCCCACA (3) 1.7 0.0017 P10.5 crx- retina CCTCAGCCTG (4) 39 0.039 P10.5 crx- retina CCTTCCCAGA (3) 13 0.013 P10.5 crx- retina GACCAGTGGA (6) 9.3 0.0093 P10.5 crx- retina CCTTCCCAGG (3) 1.9 0.0019 P10.5 crx- retina GGAGGGCGGC (3) 1.9 0.0019 P10.5 crx- retina GGTACCCCTC (3) 1.9 0.0019 P10.5 crx- retina TAAGTCCTGA (2) 1.9 0.0019 P10.5 crx+ retina CCTCAGCCTG (4) 26.9 0.0269 P10.5 crx+ retina GACCAGTGGA (6) 13.5 0.0135 P10.5 crx+ retina TCAGCTCTGA (3) 5.8 0.0058 P10.5 crx+ retina CCTTCCCAGA (3) 3.8 0.0038 P10.5 crx+ retina CCTTCCAGGA (5) 1.9 0.0019 P10.5 crx+ retina GGAGGGCGGC (3) 1.9 0.0019 Adult retinal CCTCAGCCTG (4) 20.4 0.0204 Adult retinal GACCAGTGGA (6) 5.6 0.0056 Adult retinal AAAAAAAGAA (15) 3.7 0.0037 Adult retinal CCTCACCCTG (4) 3.7 0.0037 Adult retinal CCTTCCAGGA (5) 1.9 0.0019 Adult retinal GGTACCCCTC (3) 1.9 0.0019 Adult retinal TAAGTCCTGA (2) 1.9 0.0019 Adult retinal TCAGCTCTGA (3) 1.9 0.0019 Adult retinal TTCTGTTCTG (3) 1.9 0.0019 ONL CCTCAGCCTG (4) 11.5 0.0115 ONL GACCAGTGGA (6) 5.7 0.0057 ONL AAAAAAAGAA (15) 1.9 0.0019 ONL GGAATGGACA (7) 1.9 0.0019