Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.231395	Ctsd	cathepsin D	7	4 50.0 cM	13033
Gene Ontology	aspartic-type endopeptidase activity | cathepsin D activity | hydrolase activity | lysosome | mitochondrion | pepsin A activity | peptidase activity | proteolysis and peptidolysis
Human Homolog	CTSD[cathepsin D (lysosomal aspartyl protease)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 55 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTCAGCCTG (2) 27.7 0.0277 P8 Cb GC CCTTTCCAGG (4) 1.6 0.0016 P8 Cb GC GGAATGGACA (3) 1.6 0.0016 Cb medulloblastoma CCTCAGCCTG (2) 27.7 0.0277 Cb medulloblastoma AAGACTCCCG 2.3 0.0023 Cb medulloblastoma TTCTGTTCTG 2.3 0.0023 P8 GC+1d culture CCTCAGCCTG (2) 35.4 0.0354 P8 GC+1d culture CAGCTCATCG 1.1 0.0011 P8 GC+1d culture GGAATGGACA (3) 1.1 0.0011 P8 GC+1d culture GGTCCCCACA 1.1 0.0011 P8 GC+SHH+1d culture CCTCAGCCTG (2) 31.6 0.0316 P8 GC+SHH+1d culture CAGCTCATCG 2.3 0.0023 P8 GC+SHH+1d culture CCTTCCCAGG 1.2 0.0012 P8 GC+SHH+1d culture CCTTTCCAGG (4) 1.2 0.0012 3T3 fibroblasts CCTCAGCCTG (2) 143.7 0.1437 E15 cortex CCTCAGCCTG (2) 34.6 0.0346 P1 cortex CCTCAGCCTG (2) 13.6 0.0136 Hypothalamus CCTCAGCCTG (2) 10.9 0.0109 Hypothalamus CAGCTCATCG 3.6 0.0036 Hypothalamus TTCTGTTCTG 3.6 0.0036 Hypothalamus AAGACTCCCG 1.8 0.0018 Hypothalamus GGAATGGACA (3) 1.8 0.0018 E12.5 retina CCTCAGCCTG (2) 18.8 0.0188 E12.5 retina CCTTCCCAGG 1.9 0.0019 E14.5 retina CCTCAGCCTG (2) 3.6 0.0036 E14.5 retina CCTTCCCAGG 3.6 0.0036 E14.5 retina CCTTCCAGGA (2) 1.8 0.0018 E14.5 retina GGTCCCCACA 1.8 0.0018 E16.5 retina CCTCAGCCTG (2) 9.1 0.0091 E16.5 retina CCTTCCAGGA (2) 1.8 0.0018 E16.5 retina CCTTCCCAGG 1.8 0.0018 E16.5 retina CCTTTCCAGG (4) 1.8 0.0018 E16.5 retina GCTCAGCCCT 1.8 0.0018 E16.5 retina GGTCCCCACA 1.8 0.0018 E18.5 retina CCTCAGCCTG (2) 14.6 0.0146 P0.5 retina CCTCAGCCTG (2) 5.9 0.0059 P2.5 retina CCTCAGCCTG (2) 14.1 0.0141 P2.5 retina CAGCTCATCG 1.8 0.0018 P2.5 retina CCTTTCCAGG (4) 1.8 0.0018 P2.5 retina GCTCAGCCCT 1.8 0.0018 P4.5 retina CCTCAGCCTG (2) 11.9 0.0119 P4.5 retina CAGCTCATCG 2 0.002 P4.5 retina GCTCAGCCCT 2 0.002 P6.5 retina CCTCAGCCTG (2) 26.7 0.0267 P6.5 retina CCTTTCCAGG (4) 3.3 0.0033 P6.5 retina GGTCCCCACA 1.7 0.0017 P10.5 crx- retina CCTCAGCCTG (2) 39 0.039 P10.5 crx- retina CCTTCCCAGG 1.9 0.0019 P10.5 crx+ retina CCTCAGCCTG (2) 26.9 0.0269 P10.5 crx+ retina CCTTCCAGGA (2) 1.9 0.0019 Adult retinal CCTCAGCCTG (2) 20.4 0.0204 Adult retinal CCTTCCAGGA (2) 1.9 0.0019 Adult retinal TTCTGTTCTG 1.9 0.0019 ONL CCTCAGCCTG (2) 11.5 0.0115 ONL GGAATGGACA (3) 1.9 0.0019