Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.240490
1200009K13Rik
RIKEN cDNA 1200009K13 gene
6
66870
Mm.240490
9330147J08Rik
RIKEN cDNA 9330147J08 gene
6
320467
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 273 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AATACTTTTG
(
3
)
31
0.031
P8 Cb GC
CTTAAGGATC
(
3
)
24.5
0.0245
P8 Cb GC
CCAAAAAAAA (
35
)
22.8
0.0228
P8 Cb GC
GGTAAGTGTG (
4
)
13.1
0.0131
P8 Cb GC
CTCATTTCCT
(
4
)
4.9
0.0049
P8 Cb GC
TAAGCCACCA
(
2
)
4.9
0.0049
P8 Cb GC
TTCTGGAATA (
6
)
4.9
0.0049
P8 Cb GC
AAGAATGCAT
(
3
)
3.3
0.0033
P8 Cb GC
AGCCTCTTCA
(
2
)
3.3
0.0033
P8 Cb GC
TGTGAAAATG
(
3
)
3.3
0.0033
P8 Cb GC
AGGACCACCC (
5
)
1.6
0.0016
P8 Cb GC
CAAAAGCTTT
(
2
)
1.6
0.0016
P8 Cb GC
CTGAAGATTC
(
3
)
1.6
0.0016
P8 Cb GC
CTTCAGGCCA
(
5
)
1.6
0.0016
P8 Cb GC
TAAACTTCTG
(
2
)
1.6
0.0016
P8 Cb GC
TATGAGACCT (
4
)
1.6
0.0016
P8 Cb GC
TTACAATACA (
4
)
1.6
0.0016
P8 Cb GC
TTCAGATCCC
(
4
)
1.6
0.0016
Cb medulloblastoma
CCAAAAAAAA (
35
)
90.2
0.0902
Cb medulloblastoma
CTTAAGGATC
(
3
)
6.9
0.0069
Cb medulloblastoma
AATACTTTTG
(
3
)
4.6
0.0046
Cb medulloblastoma
CTCATTTCCT
(
4
)
4.6
0.0046
Cb medulloblastoma
TTCTGGAATA (
6
)
4.6
0.0046
Cb medulloblastoma
AGTGCTGGGA
(
4
)
2.3
0.0023
Cb medulloblastoma
CAAAAGCTTT
(
2
)
2.3
0.0023
Cb medulloblastoma
CCTGGGCACC
(
5
)
2.3
0.0023
Cb medulloblastoma
GGTGTGTTGT (
5
)
2.3
0.0023
Cb medulloblastoma
TAAACTTCTG
(
2
)
2.3
0.0023
Cb medulloblastoma
TAAGCCACCA
(
2
)
2.3
0.0023
Cb medulloblastoma
TGTCCAGGAC
(
3
)
2.3
0.0023
P8 GC+1d culture
CCAAAAAAAA (
35
)
38.8
0.0388
P8 GC+1d culture
CTTAAGGATC
(
3
)
11.4
0.0114
P8 GC+1d culture
TTCTGGAATA (
6
)
10.3
0.0103
P8 GC+1d culture
AATACTTTTG
(
3
)
9.1
0.0091
P8 GC+1d culture
GGTAAGTGTG (
4
)
9.1
0.0091
P8 GC+1d culture
CCTGGGCACC
(
5
)
3.4
0.0034
P8 GC+1d culture
TATGAGACCT (
4
)
3.4
0.0034
P8 GC+1d culture
TTACAATACA (
4
)
3.4
0.0034
P8 GC+1d culture
AAAATAAATT
(
4
)
2.3
0.0023
P8 GC+1d culture
CAAAAGCTTT
(
2
)
2.3
0.0023
P8 GC+1d culture
GCCGCGGCCC (
3
)
2.3
0.0023
P8 GC+1d culture
AAAAGGTTTC (
4
)
1.1
0.0011
P8 GC+1d culture
AAGAATGCAT
(
3
)
1.1
0.0011
P8 GC+1d culture
AGGACCACCC (
5
)
1.1
0.0011
P8 GC+1d culture
CTGAAGATTC
(
3
)
1.1
0.0011
P8 GC+1d culture
GGTGTGTTGT (
5
)
1.1
0.0011
P8 GC+1d culture
TAAACTTCTG
(
2
)
1.1
0.0011
P8 GC+1d culture
TGTCCAGGAC
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
CCAAAAAAAA (
35
)
39.8
0.0398
P8 GC+SHH+1d culture
GGTAAGTGTG (
4
)
30.4
0.0304
P8 GC+SHH+1d culture
CTTAAGGATC
(
3
)
16.4
0.0164
P8 GC+SHH+1d culture
TTCTGGAATA (
6
)
10.5
0.0105
P8 GC+SHH+1d culture
AATACTTTTG
(
3
)
9.4
0.0094
P8 GC+SHH+1d culture
GCCGCGGCCC (
3
)
8.2
0.0082
P8 GC+SHH+1d culture
CCTGGGCACC
(
5
)
4.7
0.0047
P8 GC+SHH+1d culture
TAAGCCACCA
(
2
)
3.5
0.0035
P8 GC+SHH+1d culture
CAAAAGCTTT
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
GGTGTGTTGT (
5
)
2.3
0.0023
P8 GC+SHH+1d culture
TGTCCAGGAC
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
AAAATAAATT
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
AGCGACAAAC
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
CTCATTTCCT
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
CTGAAGATTC
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
CTTCAGGCCA
(
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TAAACTTCTG
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
TATGAGACCT (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TTACAATACA (
4
)
1.2
0.0012
3T3 fibroblasts
GCCGCGGCCC (
3
)
21
0.021
3T3 fibroblasts
CCTGGGCACC
(
5
)
17.5
0.0175
3T3 fibroblasts
GGTAAGTGTG (
4
)
17.5
0.0175
3T3 fibroblasts
AGCCTCTTCA
(
2
)
3.5
0.0035
3T3 fibroblasts
CTTAAGGATC
(
3
)
3.5
0.0035
3T3 fibroblasts
CTTCAGGCCA
(
5
)
3.5
0.0035
E15 cortex
CCTGGGCACC
(
5
)
14.8
0.0148
E15 cortex
CCAAAAAAAA (
35
)
9.9
0.0099
E15 cortex
CTTAAGGATC
(
3
)
9.9
0.0099
E15 cortex
CTCATTTCCT
(
4
)
4.9
0.0049
E15 cortex
CTGAAGATTC
(
3
)
4.9
0.0049
E15 cortex
GAAATGGAAA (
8
)
4.9
0.0049
E15 cortex
GGTAAGTGTG (
4
)
4.9
0.0049
P1 cortex
CCAAAAAAAA (
35
)
40.9
0.0409
P1 cortex
CTGAAGATTC
(
3
)
18.2
0.0182
P1 cortex
AATACTTTTG
(
3
)
9.1
0.0091
P1 cortex
CTTAAGGATC
(
3
)
9.1
0.0091
P1 cortex
AAAAGGTTTC (
4
)
4.5
0.0045
P1 cortex
CTCATTTCCT
(
4
)
4.5
0.0045
P1 cortex
TTCTGGAATA (
6
)
4.5
0.0045
Hypothalamus
CCAAAAAAAA (
35
)
38
0.038
Hypothalamus
CTTAAGGATC
(
3
)
12.7
0.0127
Hypothalamus
GCCGCGGCCC (
3
)
7.2
0.0072
Hypothalamus
TGCTAGGAAT
(
2
)
5.4
0.0054
Hypothalamus
TTCTGGAATA (
6
)
5.4
0.0054
Hypothalamus
AATACTTTTG
(
3
)
3.6
0.0036
Hypothalamus
AAAATAAATT
(
4
)
1.8
0.0018
Hypothalamus
AGGACCACCC (
5
)
1.8
0.0018
Hypothalamus
CCTGGGCACC
(
5
)
1.8
0.0018
Hypothalamus
CTTCAGGCCA
(
5
)
1.8
0.0018
Hypothalamus
CTTTGTAATC
(
2
)
1.8
0.0018
Hypothalamus
GGTGTGTTGT (
5
)
1.8
0.0018
Hypothalamus
TTACAATACA (
4
)
1.8
0.0018
E12.5 retina
GGTAAGTGTG (
4
)
50.7
0.0507
E12.5 retina
CTTAAGGATC
(
3
)
37.5
0.0375
E12.5 retina
AATACTTTTG
(
3
)
18.8
0.0188
E12.5 retina
CCAAAAAAAA (
35
)
16.9
0.0169
E12.5 retina
GCCGCGGCCC (
3
)
15
0.015
E12.5 retina
CCTGGGCACC
(
5
)
5.6
0.0056
E12.5 retina
TTCTGGAATA (
6
)
5.6
0.0056
E12.5 retina
AAGAATGCAT
(
3
)
3.8
0.0038
E12.5 retina
CTTTGTAATC
(
2
)
3.8
0.0038
E12.5 retina
TAAACTTCTG
(
2
)
3.8
0.0038
E12.5 retina
TTACAATACA (
4
)
3.8
0.0038
E12.5 retina
AGCGACAAAC
(
3
)
1.9
0.0019
E12.5 retina
CAAAAGCTTT
(
2
)
1.9
0.0019
E12.5 retina
CTGGAAGATT (
4
)
1.9
0.0019
E12.5 retina
TAAGCCACCA
(
2
)
1.9
0.0019
E12.5 retina
TTAACTAAAG
(
2
)
1.9
0.0019
E14.5 retina
GGTAAGTGTG (
4
)
32.8
0.0328
E14.5 retina
AATACTTTTG
(
3
)
27.3
0.0273
E14.5 retina
CTTAAGGATC
(
3
)
20
0.02
E14.5 retina
CCAAAAAAAA (
35
)
18.2
0.0182
E14.5 retina
TTCTGGAATA (
6
)
7.3
0.0073
E14.5 retina
CAAAAGCTTT
(
2
)
5.5
0.0055
E14.5 retina
AGCCTCTTCA
(
2
)
3.6
0.0036
E14.5 retina
CTTCAGGCCA
(
5
)
3.6
0.0036
E14.5 retina
GCCGCGGCCC (
3
)
3.6
0.0036
E14.5 retina
TATGAGACCT (
4
)
3.6
0.0036
E14.5 retina
TTAACTAAAG
(
2
)
3.6
0.0036
E14.5 retina
AAGAATGCAT
(
3
)
1.8
0.0018
E14.5 retina
AGCGACAAAC
(
3
)
1.8
0.0018
E14.5 retina
AGTGCTGGGA
(
4
)
1.8
0.0018
E14.5 retina
CCTGGGCACC
(
5
)
1.8
0.0018
E14.5 retina
CTCATTTCCT
(
4
)
1.8
0.0018
E14.5 retina
TAAACTTCTG
(
2
)
1.8
0.0018
E14.5 retina
TAAGCCACCA
(
2
)
1.8
0.0018
E16.5 retina
CTTAAGGATC
(
3
)
29
0.029
E16.5 retina
GGTAAGTGTG (
4
)
23.5
0.0235
E16.5 retina
AATACTTTTG
(
3
)
18.1
0.0181
E16.5 retina
CCAAAAAAAA (
35
)
16.3
0.0163
E16.5 retina
CAAAAGCTTT
(
2
)
12.7
0.0127
E16.5 retina
GCCGCGGCCC (
3
)
10.9
0.0109
E16.5 retina
CCTGGGCACC
(
5
)
9.1
0.0091
E16.5 retina
CTGAAGATTC
(
3
)
9.1
0.0091
E16.5 retina
TTCTGGAATA (
6
)
7.2
0.0072
E16.5 retina
AGCCTCTTCA
(
2
)
5.4
0.0054
E16.5 retina
AAAATAAATT
(
4
)
3.6
0.0036
E16.5 retina
CTCATTTCCT
(
4
)
3.6
0.0036
E16.5 retina
CTTCAGGCCA
(
5
)
3.6
0.0036
E16.5 retina
GGTGTGTTGT (
5
)
1.8
0.0018
E16.5 retina
TAAACTTCTG
(
2
)
1.8
0.0018
E16.5 retina
TAAGCCACCA
(
2
)
1.8
0.0018
E18.5 retina
CCAAAAAAAA (
35
)
38.2
0.0382
E18.5 retina
CTTAAGGATC
(
3
)
32.7
0.0327
E18.5 retina
GGTAAGTGTG (
4
)
32.7
0.0327
E18.5 retina
AATACTTTTG
(
3
)
14.6
0.0146
E18.5 retina
GCCGCGGCCC (
3
)
12.7
0.0127
E18.5 retina
TTCTGGAATA (
6
)
5.5
0.0055
E18.5 retina
CAAAAGCTTT
(
2
)
3.6
0.0036
E18.5 retina
CCTGGGCACC
(
5
)
3.6
0.0036
E18.5 retina
CTCATTTCCT
(
4
)
3.6
0.0036
E18.5 retina
GGTGTGTTGT (
5
)
3.6
0.0036
E18.5 retina
TAAGCCACCA
(
2
)
3.6
0.0036
E18.5 retina
AGCCTCTTCA
(
2
)
1.8
0.0018
E18.5 retina
CTGGAAGATT (
4
)
1.8
0.0018
E18.5 retina
TGTCCAGGAC
(
3
)
1.8
0.0018
P0.5 retina
CCAAAAAAAA (
35
)
29.4
0.0294
P0.5 retina
GGTAAGTGTG (
4
)
27.5
0.0275
P0.5 retina
CTTAAGGATC
(
3
)
19.6
0.0196
P0.5 retina
AATACTTTTG
(
3
)
13.7
0.0137
P0.5 retina
CAAAAGCTTT
(
2
)
3.9
0.0039
P0.5 retina
AAAATAAATT
(
4
)
2
0.002
P0.5 retina
AAGACAAACG
(
2
)
2
0.002
P0.5 retina
AGCGACAAAC
(
3
)
2
0.002
P0.5 retina
AGGACCACCC (
5
)
2
0.002
P0.5 retina
CCTGGGCACC
(
5
)
2
0.002
P0.5 retina
GCCGCGGCCC (
3
)
2
0.002
P0.5 retina
TAAGCCACCA
(
2
)
2
0.002
P0.5 retina
TATGAGACCT (
4
)
2
0.002
P0.5 retina
TTCAGATCCC
(
4
)
2
0.002
P0.5 retina
TTCTGGAATA (
6
)
2
0.002
P2.5 retina
CCAAAAAAAA (
35
)
44
0.044
P2.5 retina
GGTAAGTGTG (
4
)
21.1
0.0211
P2.5 retina
CTTAAGGATC
(
3
)
17.6
0.0176
P2.5 retina
AATACTTTTG
(
3
)
7
0.007
P2.5 retina
CCTGGGCACC
(
5
)
7
0.007
P2.5 retina
TTCTGGAATA (
6
)
7
0.007
P2.5 retina
GCCGCGGCCC (
3
)
5.3
0.0053
P2.5 retina
CTTCAGGCCA
(
5
)
3.5
0.0035
P2.5 retina
TGTCCAGGAC
(
3
)
3.5
0.0035
P2.5 retina
TTACAATACA (
4
)
3.5
0.0035
P2.5 retina
AGCCTCTTCA
(
2
)
1.8
0.0018
P2.5 retina
CAAAAGCTTT
(
2
)
1.8
0.0018
P2.5 retina
CTCATTTCCT
(
4
)
1.8
0.0018
P2.5 retina
GGTGTGTTGT (
5
)
1.8
0.0018
P4.5 retina
CCAAAAAAAA (
35
)
39.6
0.0396
P4.5 retina
GGTAAGTGTG (
4
)
17.8
0.0178
P4.5 retina
AATACTTTTG
(
3
)
11.9
0.0119
P4.5 retina
CTTAAGGATC
(
3
)
11.9
0.0119
P4.5 retina
CCTGGGCACC
(
5
)
9.9
0.0099
P4.5 retina
GCCGCGGCCC (
3
)
5.9
0.0059
P4.5 retina
AAGAATGCAT
(
3
)
2
0.002
P4.5 retina
AGGACCACCC (
5
)
2
0.002
P4.5 retina
CTGAAGATTC
(
3
)
2
0.002
P4.5 retina
TGTGAAAATG
(
3
)
2
0.002
P4.5 retina
TTCTGGAATA (
6
)
2
0.002
P6.5 retina
CCAAAAAAAA (
35
)
38.3
0.0383
P6.5 retina
CTTAAGGATC
(
3
)
11.7
0.0117
P6.5 retina
AATACTTTTG
(
3
)
8.3
0.0083
P6.5 retina
CAAAAGCTTT
(
2
)
8.3
0.0083
P6.5 retina
GCCGCGGCCC (
3
)
5
0.005
P6.5 retina
CCTGGGCACC
(
5
)
3.3
0.0033
P6.5 retina
AAGACAAACG
(
2
)
1.7
0.0017
P6.5 retina
AGCCTCTTCA
(
2
)
1.7
0.0017
P6.5 retina
AGGACCACCC (
5
)
1.7
0.0017
P6.5 retina
CTCATTTCCT
(
4
)
1.7
0.0017
P6.5 retina
CTGAAGATTC
(
3
)
1.7
0.0017
P6.5 retina
GAAATGGAAA (
8
)
1.7
0.0017
P6.5 retina
GGTAAGTGTG (
4
)
1.7
0.0017
P6.5 retina
GGTGTGTTGT (
5
)
1.7
0.0017
P6.5 retina
TAAGCCACCA
(
2
)
1.7
0.0017
P6.5 retina
TATGAGACCT (
4
)
1.7
0.0017
P6.5 retina
TGTGAAAATG
(
3
)
1.7
0.0017
P10.5 crx- retina
CCAAAAAAAA (
35
)
14.9
0.0149
P10.5 crx- retina
AATACTTTTG
(
3
)
9.3
0.0093
P10.5 crx- retina
CTCATTTCCT
(
4
)
5.6
0.0056
P10.5 crx- retina
CTTAAGGATC
(
3
)
5.6
0.0056
P10.5 crx- retina
TTCTGGAATA (
6
)
5.6
0.0056
P10.5 crx- retina
TTAACTAAAG
(
2
)
3.7
0.0037
P10.5 crx- retina
AAGACAAACG
(
2
)
1.9
0.0019
P10.5 crx- retina
AGGACCACCC (
5
)
1.9
0.0019
P10.5 crx- retina
CAAAAGCTTT
(
2
)
1.9
0.0019
P10.5 crx- retina
CCTGGGCACC
(
5
)
1.9
0.0019
P10.5 crx- retina
CTGGAAGATT (
4
)
1.9
0.0019
P10.5 crx- retina
CTTCAGGCCA
(
5
)
1.9
0.0019
P10.5 crx- retina
CTTTGTAATC
(
2
)
1.9
0.0019
P10.5 crx- retina
GAAATGGAAA (
8
)
1.9
0.0019
P10.5 crx- retina
TAAACTTCTG
(
2
)
1.9
0.0019
P10.5 crx- retina
TAAGCCACCA
(
2
)
1.9
0.0019
P10.5 crx- retina
TATGAGACCT (
4
)
1.9
0.0019
P10.5 crx- retina
TTACAATACA (
4
)
1.9
0.0019
P10.5 crx+ retina
CCAAAAAAAA (
35
)
38.4
0.0384
P10.5 crx+ retina
CTTAAGGATC
(
3
)
13.5
0.0135
P10.5 crx+ retina
AATACTTTTG
(
3
)
5.8
0.0058
P10.5 crx+ retina
GGTGTGTTGT (
5
)
5.8
0.0058
P10.5 crx+ retina
TTCTGGAATA (
6
)
3.8
0.0038
P10.5 crx+ retina
AAGAATGCAT
(
3
)
1.9
0.0019
P10.5 crx+ retina
AAGACAAACG
(
2
)
1.9
0.0019
P10.5 crx+ retina
CTTTGTAATC
(
2
)
1.9
0.0019
P10.5 crx+ retina
GCCGCGGCCC (
3
)
1.9
0.0019
P10.5 crx+ retina
GGCACCTACA (
3
)
1.9
0.0019
P10.5 crx+ retina
TAAGCCACCA
(
2
)
1.9
0.0019
P10.5 crx+ retina
TTACAATACA (
4
)
1.9
0.0019
Adult retinal
CCAAAAAAAA (
35
)
35.2
0.0352
Adult retinal
CTTAAGGATC
(
3
)
7.4
0.0074
Adult retinal
CCTGGGCACC
(
5
)
3.7
0.0037
Adult retinal
GGCACCTACA (
3
)
3.7
0.0037
Adult retinal
GGTGTGTTGT (
5
)
3.7
0.0037
Adult retinal
TTCAGATCCC
(
4
)
3.7
0.0037
Adult retinal
AAAAGGTTTC (
4
)
1.9
0.0019
Adult retinal
AATACTTTTG
(
3
)
1.9
0.0019
Adult retinal
AGTGCTGGGA
(
4
)
1.9
0.0019
Adult retinal
CTCATTTCCT
(
4
)
1.9
0.0019
Adult retinal
CTGAAGATTC
(
3
)
1.9
0.0019
Adult retinal
CTTTGTAATC
(
2
)
1.9
0.0019
Adult retinal
TTCTGGAATA (
6
)
1.9
0.0019
ONL
CCAAAAAAAA (
35
)
7.7
0.0077
ONL
TTCTGGAATA (
6
)
5.7
0.0057
ONL
AATACTTTTG
(
3
)
3.8
0.0038
ONL
CTTAAGGATC
(
3
)
3.8
0.0038
ONL
GGCACCTACA (
3
)
3.8
0.0038
ONL
GGTAAGTGTG (
4
)
1.9
0.0019
ONL
TGTGAAAATG
(
3
)
1.9
0.0019
ONL
TTAACTAAAG
(
2
)
1.9
0.0019
ONL
TTACAATACA (
4
)
1.9
0.0019
