Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.242865	D130076G13Rik	RIKEN cDNA D130076G13 gene	13		105185
Mm.242865	Papd4	PAP associated domain containing 4	13		100715
Gene Ontology	nucleic acid binding | transferase activity
Human Homolog	PAPD4[PAP associated domain containing 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACAAAAAAA (18) 4.9 0.0049 P8 Cb GC TTTTATTTTT (12) 3.3 0.0033 P8 Cb GC ACTTTAATGT (3) 1.6 0.0016 P8 Cb GC GTTTATTTTT (5) 1.6 0.0016 P8 Cb GC TAATGTCCCT (3) 1.6 0.0016 Cb medulloblastoma AACAAAAAAA (18) 9.2 0.0092 Cb medulloblastoma CACAGCTCTG (24) 2.3 0.0023 Cb medulloblastoma GTTTATTTTT (5) 2.3 0.0023 Cb medulloblastoma TTTTATTTTT (12) 2.3 0.0023 P8 GC+1d culture AACAAAAAAA (18) 3.4 0.0034 P8 GC+1d culture GTTTATTTTT (5) 3.4 0.0034 P8 GC+1d culture TTTTATTTTT (12) 3.4 0.0034 P8 GC+1d culture TAATGTCCCT (3) 2.3 0.0023 P8 GC+1d culture TAGCCTAGGC (10) 1.1 0.0011 P8 GC+SHH+1d culture AACAAAAAAA (18) 5.9 0.0059 P8 GC+SHH+1d culture TTTTATTTTT (12) 4.7 0.0047 P8 GC+SHH+1d culture AAAGTAGTAG (2) 2.3 0.0023 P8 GC+SHH+1d culture GTTTATTTTT (5) 2.3 0.0023 P8 GC+SHH+1d culture TAATGTCCCT (3) 2.3 0.0023 P8 GC+SHH+1d culture TAGCCTAGGC (10) 2.3 0.0023 P8 GC+SHH+1d culture ACTTTAATGT (3) 1.2 0.0012 E15 cortex AACAAAAAAA (18) 4.9 0.0049 P1 cortex CACAGCTCTG (24) 18.2 0.0182 P1 cortex TAATGTCCCT (3) 4.5 0.0045 Hypothalamus TAATGTCCCT (3) 3.6 0.0036 Hypothalamus TTTTATTTTT (12) 3.6 0.0036 Hypothalamus AACAAAAAAA (18) 1.8 0.0018 Hypothalamus ATAGGAAACA (2) 1.8 0.0018 E12.5 retina TTTTATTTTT (12) 7.5 0.0075 E12.5 retina AACAAAAAAA (18) 3.8 0.0038 E12.5 retina GCAGAGATTG (6) 1.9 0.0019 E12.5 retina GTTTATTTTT (5) 1.9 0.0019 E12.5 retina TAATGTCCCT (3) 1.9 0.0019 E14.5 retina GTTTATTTTT (5) 3.6 0.0036 E14.5 retina TTTTATTTTT (12) 3.6 0.0036 E14.5 retina AAAGTAGTAG (2) 1.8 0.0018 E14.5 retina AACAAAAAAA (18) 1.8 0.0018 E14.5 retina TAATGTCCCT (3) 1.8 0.0018 E16.5 retina GTTTATTTTT (5) 3.6 0.0036 E16.5 retina TAGCCTAGGC (10) 3.6 0.0036 E16.5 retina TTTTATTTTT (12) 3.6 0.0036 E16.5 retina ATAGGAAACA (2) 1.8 0.0018 E18.5 retina TTTTATTTTT (12) 12.7 0.0127 E18.5 retina AACAAAAAAA (18) 5.5 0.0055 P0.5 retina TTTTATTTTT (12) 7.9 0.0079 P0.5 retina GTTTATTTTT (5) 3.9 0.0039 P0.5 retina TAGCCTAGGC (10) 3.9 0.0039 P0.5 retina AACAAAAAAA (18) 2 0.002 P2.5 retina TTTTATTTTT (12) 5.3 0.0053 P2.5 retina AACAAAAAAA (18) 3.5 0.0035 P2.5 retina ACTTTAATGT (3) 1.8 0.0018 P2.5 retina GTTTATTTTT (5) 1.8 0.0018 P2.5 retina TAATGTCCCT (3) 1.8 0.0018 P4.5 retina AACAAAAAAA (18) 4 0.004 P4.5 retina GCAGAGATTG (6) 4 0.004 P4.5 retina TAGCCTAGGC (10) 4 0.004 P4.5 retina TAATGTCCCT (3) 2 0.002 P4.5 retina TTTTATTTTT (12) 2 0.002 P6.5 retina AAAGTAGTAG (2) 1.7 0.0017 P6.5 retina GTTTATTTTT (5) 1.7 0.0017 P6.5 retina TAGCCTAGGC (10) 1.7 0.0017 P6.5 retina TTTTATTTTT (12) 1.7 0.0017 P10.5 crx- retina AACAAAAAAA (18) 3.7 0.0037 P10.5 crx- retina ATAGGAAACA (2) 3.7 0.0037 P10.5 crx- retina TAATGTCCCT (3) 3.7 0.0037 P10.5 crx- retina TTTTATTTTT (12) 1.9 0.0019 P10.5 crx+ retina TAATGTCCCT (3) 5.8 0.0058 P10.5 crx+ retina TTTTATTTTT (12) 5.8 0.0058 P10.5 crx+ retina AACAAAAAAA (18) 1.9 0.0019 Adult retinal TAGCCTAGGC (10) 22.2 0.0222 Adult retinal TAATGTCCCT (3) 11.1 0.0111 Adult retinal CACAGCTCTG (24) 1.9 0.0019 ONL TAGCCTAGGC (10) 13.4 0.0134 ONL TAATGTCCCT (3) 5.7 0.0057 ONL TTTTATTTTT (12) 3.8 0.0038