Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259751	9030622M22Rik	RIKEN cDNA 9030622M22 gene	8		74547
Mm.259751	Clcn3	chloride channel 3	8	8 32.2 cM	12725
Gene Ontology	chloride transport | integral to membrane | ion channel activity | ion transport | membrane | voltage-gated chloride channel activity | voltage-gated ion channel activity
Human Homolog	CLCN3[chloride channel 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 92 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACTAAAAAA (12) 8.2 0.0082 P8 Cb GC TGTTTAGCAG (3) 3.3 0.0033 P8 Cb GC AAGAATGCTT (4) 1.6 0.0016 P8 Cb GC ATACCTTCTG (3) 1.6 0.0016 P8 Cb GC CATCCTTTTT (2) 1.6 0.0016 P8 Cb GC TGAGATGATA (5) 1.6 0.0016 P8 Cb GC TTGCCCTGCA (4) 1.6 0.0016 Cb medulloblastoma AAGAATGCTT (4) 9.2 0.0092 Cb medulloblastoma GTATCCACTA (2) 6.9 0.0069 Cb medulloblastoma AGCCCTTTTA (3) 4.6 0.0046 Cb medulloblastoma AACTAAAAAA (12) 2.3 0.0023 Cb medulloblastoma TGTTTAGCAG (3) 2.3 0.0023 P8 GC+1d culture AAGAATGCTT (4) 2.3 0.0023 P8 GC+1d culture ATACCTTCTG (3) 2.3 0.0023 P8 GC+1d culture AACTAAAAAA (12) 1.1 0.0011 P8 GC+1d culture TGTTTAGCAG (3) 1.1 0.0011 P8 GC+1d culture TTAAACACTG (3) 1.1 0.0011 P8 GC+SHH+1d culture AACTAAAAAA (12) 3.5 0.0035 P8 GC+SHH+1d culture AAAAGTGACG (2) 2.3 0.0023 P8 GC+SHH+1d culture AAGAATGCTT (4) 1.2 0.0012 P8 GC+SHH+1d culture CATCCTTTTT (2) 1.2 0.0012 P8 GC+SHH+1d culture GGGGAGTGGA (3) 1.2 0.0012 P8 GC+SHH+1d culture GTATCCACTA (2) 1.2 0.0012 P8 GC+SHH+1d culture TGAGATGATA (5) 1.2 0.0012 P8 GC+SHH+1d culture TGTTTAGCAG (3) 1.2 0.0012 3T3 fibroblasts TTGCCCTGCA (4) 10.5 0.0105 3T3 fibroblasts GCCATTGGAG (3) 3.5 0.0035 E15 cortex GGGGAGTGGA (3) 9.9 0.0099 E15 cortex ATACCTTCTG (3) 4.9 0.0049 P1 cortex AAGAATGCTT (4) 4.5 0.0045 P1 cortex ATACCTTCTG (3) 4.5 0.0045 P1 cortex GGGGAGTGGA (3) 4.5 0.0045 Hypothalamus AAAAGTGACG (2) 1.8 0.0018 Hypothalamus AAAGACAACA (6) 1.8 0.0018 Hypothalamus AAGAATGCTT (4) 1.8 0.0018 Hypothalamus GCCATTGGAG (3) 1.8 0.0018 Hypothalamus GGGGAGTGGA (3) 1.8 0.0018 Hypothalamus GTATCCACTA (2) 1.8 0.0018 Hypothalamus TGAGATGATA (5) 1.8 0.0018 E12.5 retina AGCCCTTTTA (3) 1.9 0.0019 E12.5 retina GTATCCACTA (2) 1.9 0.0019 E12.5 retina TTGCCCTGCA (4) 1.9 0.0019 E14.5 retina GGAAATGAGA (6) 14.6 0.0146 E14.5 retina AAGAATGCTT (4) 5.5 0.0055 E14.5 retina AACTAAAAAA (12) 3.6 0.0036 E14.5 retina ATACCTTCTG (3) 1.8 0.0018 E14.5 retina TGTTTAGCAG (3) 1.8 0.0018 E16.5 retina TGTTTAGCAG (3) 5.4 0.0054 E16.5 retina AAGAATGCTT (4) 1.8 0.0018 E16.5 retina ATACCTTCTG (3) 1.8 0.0018 E18.5 retina AAAAGTGACG (2) 3.6 0.0036 E18.5 retina AACTAAAAAA (12) 3.6 0.0036 E18.5 retina AAAGACAACA (6) 1.8 0.0018 E18.5 retina GCCATTGGAG (3) 1.8 0.0018 E18.5 retina TTGCCCTGCA (4) 1.8 0.0018 P0.5 retina AAAGACAACA (6) 3.9 0.0039 P0.5 retina TGTTTAGCAG (3) 3.9 0.0039 P0.5 retina AGCCCTTTTA (3) 2 0.002 P0.5 retina GGGGAGTGGA (3) 2 0.002 P0.5 retina GTATCCACTA (2) 2 0.002 P2.5 retina AAGAATGCTT (4) 1.8 0.0018 P2.5 retina GTATCCACTA (2) 1.8 0.0018 P2.5 retina TGTTTAGCAG (3) 1.8 0.0018 P4.5 retina AAAAGTGACG (2) 2 0.002 P4.5 retina AACTAAAAAA (12) 2 0.002 P4.5 retina AAGAATGCTT (4) 2 0.002 P4.5 retina AGCCCTTTTA (3) 2 0.002 P6.5 retina AAGAATGCTT (4) 8.3 0.0083 P6.5 retina GGGGAGTGGA (3) 5 0.005 P6.5 retina TGTTTAGCAG (3) 3.3 0.0033 P6.5 retina AAAAGTGACG (2) 1.7 0.0017 P6.5 retina AGCCCTTTTA (3) 1.7 0.0017 P10.5 crx- retina AAGAATGCTT (4) 16.7 0.0167 P10.5 crx- retina ACCCATCTTC (3) 3.7 0.0037 P10.5 crx- retina TGTTTAGCAG (3) 3.7 0.0037 P10.5 crx- retina GTATCCACTA (2) 1.9 0.0019 P10.5 crx- retina TTAAACACTG (3) 1.9 0.0019 P10.5 crx+ retina AAAAGTGACG (2) 3.8 0.0038 P10.5 crx+ retina AACTAAAAAA (12) 3.8 0.0038 P10.5 crx+ retina TTGCCCTGCA (4) 3.8 0.0038 P10.5 crx+ retina AAGAATGCTT (4) 1.9 0.0019 P10.5 crx+ retina ACCCATCTTC (3) 1.9 0.0019 P10.5 crx+ retina GTATCCACTA (2) 1.9 0.0019 P10.5 crx+ retina TGTTTAGCAG (3) 1.9 0.0019 Adult retinal AAGAATGCTT (4) 1.9 0.0019 ONL AACTAAAAAA (12) 5.7 0.0057 ONL AAGAATGCTT (4) 1.9 0.0019 ONL ACCCATCTTC (3) 1.9 0.0019 ONL CATCCTTTTT (2) 1.9 0.0019 ONL GGAAATGAGA (6) 1.9 0.0019 ONL TGAGATGATA (5) 1.9 0.0019 ONL TTAAACACTG (3) 1.9 0.0019