Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.260539
D230035N22Rik
RIKEN cDNA D230035N22 gene
11
319864
Mm.260539
Psmd11
proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
11
11 B5
69077
Mm.260539
1700089D09Rik
RIKEN cDNA 1700089D09 gene
11
73519
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 106 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TAATCCGTAC
(
3
)
9.8
0.0098
P8 Cb GC
CAGTCAGGCT (
7
)
4.9
0.0049
P8 Cb GC
CCCCACCCCA (
5
)
4.9
0.0049
P8 Cb GC
AAACCTTCTG (
6
)
3.3
0.0033
P8 Cb GC
TCCAGTCCCT
(
3
)
3.3
0.0033
P8 Cb GC
AGAACTGGCC
(
4
)
1.6
0.0016
P8 Cb GC
CAGGCAGAGC
(
3
)
1.6
0.0016
P8 Cb GC
CTCTGTTTTT
(
5
)
1.6
0.0016
P8 Cb GC
GGATTTGGAC (
6
)
1.6
0.0016
P8 Cb GC
GTGGTGGCCC (
4
)
1.6
0.0016
Cb medulloblastoma
CCCCACCCCA (
5
)
4.6
0.0046
Cb medulloblastoma
CAGTCAGGCT (
7
)
2.3
0.0023
Cb medulloblastoma
GGATTTGGAC (
6
)
2.3
0.0023
Cb medulloblastoma
GTGGTGGCCC (
4
)
2.3
0.0023
Cb medulloblastoma
TAATCCGTAC
(
3
)
2.3
0.0023
P8 GC+1d culture
TAATCCGTAC
(
3
)
5.7
0.0057
P8 GC+1d culture
GTGGTGGCCC (
4
)
4.6
0.0046
P8 GC+1d culture
CCCCACCCCA (
5
)
3.4
0.0034
P8 GC+1d culture
AGAACTGGCC
(
4
)
1.1
0.0011
P8 GC+1d culture
CTCTGTTTTT
(
5
)
1.1
0.0011
P8 GC+1d culture
TCCAGTCCCT
(
3
)
1.1
0.0011
P8 GC+1d culture
TCTACAGCAG
(
6
)
1.1
0.0011
P8 GC+SHH+1d culture
CCCCACCCCA (
5
)
10.5
0.0105
P8 GC+SHH+1d culture
TAATCCGTAC
(
3
)
9.4
0.0094
P8 GC+SHH+1d culture
TCCAGTCCCT
(
3
)
5.9
0.0059
P8 GC+SHH+1d culture
GGATTTGGAC (
6
)
2.3
0.0023
P8 GC+SHH+1d culture
TCTACAGCAG
(
6
)
2.3
0.0023
P8 GC+SHH+1d culture
AAACCTTCTG (
6
)
1.2
0.0012
3T3 fibroblasts
CCCCACCCCA (
5
)
10.5
0.0105
3T3 fibroblasts
TCCAGTCCCT
(
3
)
7
0.007
3T3 fibroblasts
GTGGTGGCCC (
4
)
3.5
0.0035
E15 cortex
TCCAGTCCCT
(
3
)
24.7
0.0247
E15 cortex
CCCCACCCCA (
5
)
4.9
0.0049
E15 cortex
CTCTGTTTTT
(
5
)
4.9
0.0049
P1 cortex
CAGTCAGGCT (
7
)
4.5
0.0045
P1 cortex
GTGGTGGCCC (
4
)
4.5
0.0045
Hypothalamus
TCCAGTCCCT
(
3
)
3.6
0.0036
Hypothalamus
CCCCACCCCA (
5
)
1.8
0.0018
Hypothalamus
CTCTGTTTTT
(
5
)
1.8
0.0018
Hypothalamus
GTGGTGGCCC (
4
)
1.8
0.0018
Hypothalamus
TAATCCGTAC
(
3
)
1.8
0.0018
E12.5 retina
CCCCACCCCA (
5
)
15
0.015
E12.5 retina
GGATTTGGAC (
6
)
13.1
0.0131
E12.5 retina
TCCAGTCCCT
(
3
)
5.6
0.0056
E12.5 retina
GTGGTGGCCC (
4
)
3.8
0.0038
E12.5 retina
TAATCCGTAC
(
3
)
3.8
0.0038
E12.5 retina
CAGTCAGGCT (
7
)
1.9
0.0019
E12.5 retina
CTCTGTTTTT
(
5
)
1.9
0.0019
E14.5 retina
TAATCCGTAC
(
3
)
12.8
0.0128
E14.5 retina
CCCCACCCCA (
5
)
10.9
0.0109
E14.5 retina
AAACTTCTTG
(
4
)
1.8
0.0018
E14.5 retina
AGAACTGGCC
(
4
)
1.8
0.0018
E14.5 retina
GGATTTGGAC (
6
)
1.8
0.0018
E16.5 retina
TAATCCGTAC
(
3
)
7.2
0.0072
E16.5 retina
CCCCACCCCA (
5
)
3.6
0.0036
E16.5 retina
AAACTTCTTG
(
4
)
1.8
0.0018
E16.5 retina
GGATTTGGAC (
6
)
1.8
0.0018
E16.5 retina
GGGATTTTGG (
5
)
1.8
0.0018
E16.5 retina
GTGGTGGCCC (
4
)
1.8
0.0018
E16.5 retina
TCCAGTCCCT
(
3
)
1.8
0.0018
E18.5 retina
GGATTTGGAC (
6
)
9.1
0.0091
E18.5 retina
TAATCCGTAC
(
3
)
7.3
0.0073
E18.5 retina
CCCCACCCCA (
5
)
3.6
0.0036
E18.5 retina
TCCAGTCCCT
(
3
)
3.6
0.0036
E18.5 retina
GAAAGAAATA (
7
)
1.8
0.0018
P0.5 retina
CCCCACCCCA (
5
)
5.9
0.0059
P0.5 retina
GGATTTGGAC (
6
)
3.9
0.0039
P0.5 retina
TAATCCGTAC
(
3
)
3.9
0.0039
P0.5 retina
TCCAGTCCCT
(
3
)
3.9
0.0039
P0.5 retina
GTGGTGGCCC (
4
)
2
0.002
P2.5 retina
TAATCCGTAC
(
3
)
10.6
0.0106
P2.5 retina
CCCCACCCCA (
5
)
3.5
0.0035
P2.5 retina
GGATTTGGAC (
6
)
3.5
0.0035
P2.5 retina
CTCTGTTTTT
(
5
)
1.8
0.0018
P2.5 retina
GAAAGAAATA (
7
)
1.8
0.0018
P2.5 retina
GTGGTGGCCC (
4
)
1.8
0.0018
P4.5 retina
TAATCCGTAC
(
3
)
7.9
0.0079
P4.5 retina
CCCCACCCCA (
5
)
5.9
0.0059
P4.5 retina
GGGATTTTGG (
5
)
5.9
0.0059
P4.5 retina
AGAACTGGCC
(
4
)
2
0.002
P4.5 retina
CTCTGTTTTT
(
5
)
2
0.002
P4.5 retina
GAAAGAAATA (
7
)
2
0.002
P4.5 retina
TCCAGTCCCT
(
3
)
2
0.002
P6.5 retina
TAATCCGTAC
(
3
)
3.3
0.0033
P6.5 retina
TCCAGTCCCT
(
3
)
3.3
0.0033
P6.5 retina
CTCTGTTTTT
(
5
)
1.7
0.0017
P6.5 retina
GGGATTTTGG (
5
)
1.7
0.0017
P6.5 retina
GTGGTGGCCC (
4
)
1.7
0.0017
P10.5 crx- retina
GAAAGAAATA (
7
)
5.6
0.0056
P10.5 crx- retina
CTCTGTTTTT
(
5
)
3.7
0.0037
P10.5 crx- retina
TAATCCGTAC
(
3
)
3.7
0.0037
P10.5 crx- retina
TCCAGTCCCT
(
3
)
3.7
0.0037
P10.5 crx- retina
GTGGTGGCCC (
4
)
1.9
0.0019
P10.5 crx- retina
TACTTCAGAG (
4
)
1.9
0.0019
P10.5 crx+ retina
TAATCCGTAC
(
3
)
7.7
0.0077
P10.5 crx+ retina
CAGTCAGGCT (
7
)
3.8
0.0038
P10.5 crx+ retina
GAAAGAAATA (
7
)
3.8
0.0038
P10.5 crx+ retina
GTGGTGGCCC (
4
)
3.8
0.0038
P10.5 crx+ retina
TCCAGTCCCT
(
3
)
3.8
0.0038
P10.5 crx+ retina
CCCCACCCCA (
5
)
1.9
0.0019
P10.5 crx+ retina
GGATTTGGAC (
6
)
1.9
0.0019
Adult retinal
CCCCACCCCA (
5
)
5.6
0.0056
Adult retinal
AAACTTCTTG
(
4
)
1.9
0.0019
ONL
CAGGCAGAGC
(
3
)
5.7
0.0057
ONL
GAAAGAAATA (
7
)
5.7
0.0057
ONL
GGATTTGGAC (
6
)
1.9
0.0019
