Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271814	5730405M06Rik	RIKEN cDNA 5730405M06 gene	11		320690
Mm.271814	A230020K14Rik	RIKEN cDNA A230020K14 gene	11		319274
Mm.271814	Ncor1	nuclear receptor co-repressor 1	11	11 B2	20185
Gene Ontology	DNA binding | nucleus | receptor activity | regulation of transcription, DNA-dependent
Human Homolog	NCOR1[nuclear receptor co-repressor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

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SAGE Tags

Total 160 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCGCACG (61) 13.1 0.0131 P8 Cb GC CGCCCCATCT (3) 4.9 0.0049 P8 Cb GC GGTATGTTAT (5) 4.9 0.0049 P8 Cb GC AATTAAAAAT (5) 3.3 0.0033 P8 Cb GC GATGAGGAAG (9) 3.3 0.0033 P8 Cb GC AATTAAAAAA (8) 1.6 0.0016 P8 Cb GC CAACAGCTGC (7) 1.6 0.0016 P8 Cb GC CCAGCTTAAC (3) 1.6 0.0016 P8 Cb GC GTGCAGGAGG (18) 1.6 0.0016 Cb medulloblastoma GTGGCGCACG (61) 6.9 0.0069 Cb medulloblastoma AATTAAAAAA (8) 4.6 0.0046 Cb medulloblastoma AATTAAAAAT (5) 2.3 0.0023 Cb medulloblastoma CCTGCCTCCC (8) 2.3 0.0023 Cb medulloblastoma GATGAGGAAG (9) 2.3 0.0023 Cb medulloblastoma GGTATGTTAT (5) 2.3 0.0023 P8 GC+1d culture GTGGCGCACG (61) 6.8 0.0068 P8 GC+1d culture GTGCAGGAGG (18) 4.6 0.0046 P8 GC+1d culture GGTATGTTAT (5) 2.3 0.0023 P8 GC+1d culture GTCAGTCAAA (4) 2.3 0.0023 P8 GC+1d culture AATTAAAAAA (8) 1.1 0.0011 P8 GC+1d culture ATGTCTTTAA (8) 1.1 0.0011 P8 GC+1d culture CGCCCCATCT (3) 1.1 0.0011 P8 GC+1d culture GTTTTCTTAA (6) 1.1 0.0011 P8 GC+1d culture TCCAGCAGAA (3) 1.1 0.0011 P8 GC+1d culture TGGTGGCTGG (6) 1.1 0.0011 P8 GC+SHH+1d culture CGCCCCATCT (3) 2.3 0.0023 P8 GC+SHH+1d culture GGTATGTTAT (5) 2.3 0.0023 P8 GC+SHH+1d culture GTGGCGCACG (61) 2.3 0.0023 P8 GC+SHH+1d culture AATTAAAAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture AATTAAAAAT (5) 1.2 0.0012 P8 GC+SHH+1d culture ATAGCCAGGG (5) 1.2 0.0012 P8 GC+SHH+1d culture CCAGCTTAAC (3) 1.2 0.0012 P8 GC+SHH+1d culture GAAGCGTGGG (7) 1.2 0.0012 P8 GC+SHH+1d culture GTCAGTCAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture TGGGTGTTGA (8) 1.2 0.0012 3T3 fibroblasts GTGGCGCACG (61) 63.1 0.0631 3T3 fibroblasts CGCCCCATCT (3) 7 0.007 3T3 fibroblasts GTGCAGGAGG (18) 3.5 0.0035 E15 cortex GTGGCGCACG (61) 113.8 0.1138 E15 cortex GTGCAGGAGG (18) 14.8 0.0148 E15 cortex CGCCCCATCT (3) 9.9 0.0099 E15 cortex GAAGCGTGGG (7) 9.9 0.0099 E15 cortex TGGTGGCTGG (6) 9.9 0.0099 E15 cortex CCTGCCTCCC (8) 4.9 0.0049 E15 cortex GATGAGGAAG (9) 4.9 0.0049 P1 cortex GTGGCGCACG (61) 18.2 0.0182 P1 cortex CGCCCCATCT (3) 4.5 0.0045 P1 cortex GTCAGTCAAA (4) 4.5 0.0045 Hypothalamus GTCAGTCAAA (4) 3.6 0.0036 Hypothalamus GTGCAGGAGG (18) 3.6 0.0036 Hypothalamus GTGGCGCACG (61) 3.6 0.0036 Hypothalamus ATAGCCAGGG (5) 1.8 0.0018 Hypothalamus CGCCCCATCT (3) 1.8 0.0018 Hypothalamus TAAATATAAA (6) 1.8 0.0018 Hypothalamus TGGTGGCTGG (6) 1.8 0.0018 E12.5 retina GTGGCGCACG (61) 11.3 0.0113 E12.5 retina TGGTGGCTGG (6) 5.6 0.0056 E12.5 retina AAGCTGCAGG (8) 1.9 0.0019 E12.5 retina ACATACTGGG (3) 1.9 0.0019 E12.5 retina ATGTCTTTAA (8) 1.9 0.0019 E12.5 retina CAACAGCTGC (7) 1.9 0.0019 E12.5 retina CGCCCCATCT (3) 1.9 0.0019 E12.5 retina GGTATGTTAT (5) 1.9 0.0019 E12.5 retina GTGCAGGAGG (18) 1.9 0.0019 E14.5 retina GTGGCGCACG (61) 29.2 0.0292 E14.5 retina AAGCTGCAGG (8) 9.1 0.0091 E14.5 retina GTGCAGGAGG (18) 9.1 0.0091 E14.5 retina GATGAGGAAG (9) 3.6 0.0036 E14.5 retina TGGTGGCTGG (6) 3.6 0.0036 E14.5 retina ATGTCTTTAA (8) 1.8 0.0018 E14.5 retina CGCCCCATCT (3) 1.8 0.0018 E16.5 retina GTGGCGCACG (61) 25.4 0.0254 E16.5 retina TGGTGGCTGG (6) 10.9 0.0109 E16.5 retina GTGCAGGAGG (18) 5.4 0.0054 E16.5 retina AATTAAAAAA (8) 3.6 0.0036 E16.5 retina ACATACTGGG (3) 3.6 0.0036 E16.5 retina CGCCCCATCT (3) 3.6 0.0036 E16.5 retina GATGAGGAAG (9) 3.6 0.0036 E16.5 retina GGTATGTTAT (5) 3.6 0.0036 E16.5 retina TCCAGCAGAA (3) 3.6 0.0036 E16.5 retina AAGCTGCAGG (8) 1.8 0.0018 E16.5 retina ATAGCCAGGG (5) 1.8 0.0018 E16.5 retina GTCAGTCAAA (4) 1.8 0.0018 E16.5 retina TAAATATAAA (6) 1.8 0.0018 E16.5 retina TGGGTGTTGA (8) 1.8 0.0018 E18.5 retina AAGCTGCAGG (8) 14.6 0.0146 E18.5 retina GTGGCGCACG (61) 10.9 0.0109 E18.5 retina GTGCAGGAGG (18) 7.3 0.0073 E18.5 retina CAACAGCTGC (7) 3.6 0.0036 E18.5 retina TAAATATAAA (6) 3.6 0.0036 E18.5 retina GATGAGGAAG (9) 1.8 0.0018 E18.5 retina GGTATGTTAT (5) 1.8 0.0018 E18.5 retina TGGGTGTTGA (8) 1.8 0.0018 P0.5 retina GTGGCGCACG (61) 25.5 0.0255 P0.5 retina AAGCTGCAGG (8) 21.6 0.0216 P0.5 retina CAGGTTTCAA (5) 2 0.002 P0.5 retina GATGAGGAAG (9) 2 0.002 P0.5 retina GGTATGTTAT (5) 2 0.002 P2.5 retina GTGGCGCACG (61) 17.6 0.0176 P2.5 retina AAGCTGCAGG (8) 7 0.007 P2.5 retina CGCCCCATCT (3) 5.3 0.0053 P2.5 retina CAGGTTTCAA (5) 3.5 0.0035 P2.5 retina GGTATGTTAT (5) 3.5 0.0035 P2.5 retina GTCAGTCAAA (4) 1.8 0.0018 P2.5 retina GTGCAGGAGG (18) 1.8 0.0018 P2.5 retina TGGTGGCTGG (6) 1.8 0.0018 P4.5 retina GTGGCGCACG (61) 17.8 0.0178 P4.5 retina AAGCTGCAGG (8) 13.9 0.0139 P4.5 retina GGTATGTTAT (5) 5.9 0.0059 P4.5 retina CGCCCCATCT (3) 4 0.004 P4.5 retina AAAAGGAGAT (4) 2 0.002 P4.5 retina ACATACTGGG (3) 2 0.002 P4.5 retina ATACGAAGTC (3) 2 0.002 P4.5 retina CCAGCTTAAC (3) 2 0.002 P4.5 retina CCTGCCTCCC (8) 2 0.002 P4.5 retina GTGCAGGAGG (18) 2 0.002 P4.5 retina TGGTGGCTGG (6) 2 0.002 P6.5 retina GTGGCGCACG (61) 38.3 0.0383 P6.5 retina AAGCTGCAGG (8) 8.3 0.0083 P6.5 retina GTGCAGGAGG (18) 5 0.005 P6.5 retina GGTATGTTAT (5) 3.3 0.0033 P6.5 retina AAAAGGAGAT (4) 1.7 0.0017 P6.5 retina CAACAGCTGC (7) 1.7 0.0017 P6.5 retina CCAGCTTAAC (3) 1.7 0.0017 P6.5 retina GTCAGTCAAA (4) 1.7 0.0017 P6.5 retina TGGTGGCTGG (6) 1.7 0.0017 P10.5 crx- retina GTGGCGCACG (61) 13 0.013 P10.5 crx- retina CGCCCCATCT (3) 3.7 0.0037 P10.5 crx- retina GGTATGTTAT (5) 3.7 0.0037 P10.5 crx- retina AAGCTGCAGG (8) 1.9 0.0019 P10.5 crx- retina ATACGAAGTC (3) 1.9 0.0019 P10.5 crx- retina CCAGCTTAAC (3) 1.9 0.0019 P10.5 crx+ retina GTGGCGCACG (61) 32.7 0.0327 P10.5 crx+ retina CCTGCCTCCC (8) 3.8 0.0038 P10.5 crx+ retina AAAAGGAGAT (4) 1.9 0.0019 P10.5 crx+ retina ATACGAAGTC (3) 1.9 0.0019 P10.5 crx+ retina CGCCCCATCT (3) 1.9 0.0019 P10.5 crx+ retina GATGAGGAAG (9) 1.9 0.0019 P10.5 crx+ retina GTCAGTCAAA (4) 1.9 0.0019 P10.5 crx+ retina GTGCAGGAGG (18) 1.9 0.0019 P10.5 crx+ retina TGGTGGCTGG (6) 1.9 0.0019 Adult retinal GTGGCGCACG (61) 22.2 0.0222 Adult retinal AAGCTGCAGG (8) 9.3 0.0093 Adult retinal GTGCAGGAGG (18) 5.6 0.0056 Adult retinal CCAGCTTAAC (3) 3.7 0.0037 Adult retinal CGCCCCATCT (3) 3.7 0.0037 Adult retinal ATAGCCAGGG (5) 1.9 0.0019 Adult retinal ATGTCTTTAA (8) 1.9 0.0019 Adult retinal GATGAGGAAG (9) 1.9 0.0019 Adult retinal GGTATGTTAT (5) 1.9 0.0019 Adult retinal GTCAGTCAAA (4) 1.9 0.0019 Adult retinal TAAATATAAA (6) 1.9 0.0019 Adult retinal TGGTGGCTGG (6) 1.9 0.0019 ONL GTGGCGCACG (61) 23 0.023 ONL AAGCTGCAGG (8) 3.8 0.0038 ONL AATTAAAAAA (8) 3.8 0.0038 ONL GTGCAGGAGG (18) 3.8 0.0038 ONL GTTTTCTTAA (6) 3.8 0.0038 ONL GTCAGTCAAA (4) 1.9 0.0019 ONL TGGTGGCTGG (6) 1.9 0.0019