Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.27545	Hrmt1l2-rs	heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae), related sequence	18	18 2.0 cM	93844
Mm.27545	Hrmt1l2	heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae)	7	7 23.1 cM	15469
Gene Ontology	methyltransferase activity | nucleus | organogenesis | protein methyltransferase activity | ribonucleoprotein complex | RNA processing | S-adenosylmethionine-dependent methyltransferase activity | transferase activity | viral nucleocapsid
Human Homolog	HRMT1L2[HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 150 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC CCAAAAAAAA (35) 22.8 0.0228 P8 Cb GC GAGGACTACC (6) 4.9 0.0049 P8 Cb GC GTCAGCTGAG (3) 4.9 0.0049 P8 Cb GC AGTTGAAGGG (3) 3.3 0.0033 P8 Cb GC AAAAGAAAAA (21) 1.6 0.0016 P8 Cb GC GGATGAGGCC (2) 1.6 0.0016 P8 Cb GC TAGAACACAG (2) 1.6 0.0016 P8 Cb GC TTCGCTGCCA (8) 1.6 0.0016 P8 Cb GC TTTCACAAAA (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma CCAAAAAAAA (35) 90.2 0.0902 Cb medulloblastoma AAAAGAAAAA (21) 11.6 0.0116 Cb medulloblastoma GTCAACACCG (2) 2.3 0.0023 Cb medulloblastoma TTCGCTGCCA (8) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CCAAAAAAAA (35) 38.8 0.0388 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture GTCAACACCG (2) 4.6 0.0046 P8 GC+1d culture GAGGACTACC (6) 3.4 0.0034 P8 GC+1d culture GTCAGCTGAG (3) 3.4 0.0034 P8 GC+1d culture TTTCCTGCCA (6) 2.3 0.0023 P8 GC+1d culture AAAAGAAAAA (21) 1.1 0.0011 P8 GC+1d culture TTCGCTGCCA (8) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture CCAAAAAAAA (35) 39.8 0.0398 P8 GC+SHH+1d culture AAAAGAAAAA (21) 3.5 0.0035 P8 GC+SHH+1d culture CCCAAAAAAA (19) 3.5 0.0035 P8 GC+SHH+1d culture TTCGCTGCCA (8) 3.5 0.0035 P8 GC+SHH+1d culture CCAAAACAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture GTCAGCTGAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TTTCCTGCCA (6) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTCAACACCG (2) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex CCAAAAAAAA (35) 9.9 0.0099 E15 cortex CCCAAAAAAA (19) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CCAAAAAAAA (35) 40.9 0.0409 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex CCAAAACAAA (8) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus CCAAAAAAAA (35) 38 0.038 Hypothalamus TTCGCTGCCA (8) 5.4 0.0054 Hypothalamus AGTTGAAGGG (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina CCAAAAAAAA (35) 16.9 0.0169 E12.5 retina GAGGACTACC (6) 5.6 0.0056 E12.5 retina GGATGAGGCC (2) 3.8 0.0038 E12.5 retina TTCGCTGCCA (8) 3.8 0.0038 E12.5 retina GTCAGCTAAA (2) 1.9 0.0019 E12.5 retina GTCAGCTGAG (3) 1.9 0.0019 E12.5 retina TTTCCTGCCA (6) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina CCAAAAAAAA (35) 18.2 0.0182 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina GTCAGCTGAG (3) 3.6 0.0036 E14.5 retina CCAAAACAAA (8) 1.8 0.0018 E14.5 retina GAGGACTACC (6) 1.8 0.0018 E14.5 retina TTCGCTGCCA (8) 1.8 0.0018 E14.5 retina TTTCCTGCCA (6) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina CCAAAAAAAA (35) 16.3 0.0163 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina GTCAGCTGAG (3) 5.4 0.0054 E16.5 retina TTCGCTGCCA (8) 3.6 0.0036 E16.5 retina AGTTGAAGGG (3) 1.8 0.0018 E16.5 retina CCCAAAAAAA (19) 1.8 0.0018 E16.5 retina TTTCCTGCCA (6) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina CCAAAAAAAA (35) 38.2 0.0382 E18.5 retina AAAAGAAAAA (21) 5.5 0.0055 E18.5 retina GAGGACTACC (6) 5.5 0.0055 E18.5 retina CCCAAAAAAA (19) 3.6 0.0036 E18.5 retina GTCAGCTGAG (3) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CCAAAAAAAA (35) 29.4 0.0294 P0.5 retina GAGGACTACC (6) 7.9 0.0079 P0.5 retina GTCAGCTAAA (2) 3.9 0.0039 P0.5 retina TTCGCTGCCA (8) 3.9 0.0039 P0.5 retina TTTCCTGCCA (6) 3.9 0.0039 P0.5 retina CCAAAACAAA (8) 2 0.002 P0.5 retina CCCAAAAAAA (19) 2 0.002 P0.5 retina GTCAACACCG (2) 2 0.002 P0.5 retina TAGAACACAG (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina CCAAAAAAAA (35) 44 0.044 P2.5 retina GAGGACTACC (6) 5.3 0.0053 P2.5 retina TTCGCTGCCA (8) 5.3 0.0053 P2.5 retina AAAAGAAAAA (21) 3.5 0.0035 P2.5 retina TTTCCTGCCA (6) 3.5 0.0035 P2.5 retina AGTTGAAGGG (3) 1.8 0.0018 P2.5 retina CCAAAACAAA (8) 1.8 0.0018 P2.5 retina CCCAAAAAAA (19) 1.8 0.0018 P2.5 retina GTCAGCTGAG (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina CCAAAAAAAA (35) 39.6 0.0396 P4.5 retina AAAAGAAAAA (21) 9.9 0.0099 P4.5 retina GTCAGCTGAG (3) 5.9 0.0059 P4.5 retina TTCGCTGCCA (8) 5.9 0.0059 P4.5 retina CCCAAAAAAA (19) 2 0.002 P4.5 retina GAGGACTACC (6) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CCAAAAAAAA (35) 38.3 0.0383 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina TTCGCTGCCA (8) 8.3 0.0083 P6.5 retina CCCAAAAAAA (19) 3.3 0.0033 P6.5 retina GTCAGCTGAG (3) 3.3 0.0033 P6.5 retina GAGGACTACC (6) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CCAAAAAAAA (35) 14.9 0.0149 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina GAGGACTACC (6) 7.4 0.0074 P10.5 crx- retina TTCGCTGCCA (8) 5.6 0.0056 P10.5 crx- retina AAAAGAAAAA (21) 1.9 0.0019 P10.5 crx- retina TAGAACACAG (2) 1.9 0.0019 P10.5 crx- retina TTTCCTGCCA (6) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CCAAAAAAAA (35) 38.4 0.0384 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina GAGGACTACC (6) 3.8 0.0038 P10.5 crx+ retina GTCAGCTGAG (3) 3.8 0.0038 P10.5 crx+ retina AAAAGAAAAA (21) 1.9 0.0019 P10.5 crx+ retina CCAAAACAAA (8) 1.9 0.0019 P10.5 crx+ retina GTCAACACCG (2) 1.9 0.0019 P10.5 crx+ retina TTCGCTGCCA (8) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CCAAAAAAAA (35) 35.2 0.0352 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal GTCAGCTGAG (3) 3.7 0.0037 Adult retinal AAAAGAAAAA (21) 1.9 0.0019 Adult retinal CCCAAAAAAA (19) 1.9 0.0019 Adult retinal TTTCACAAAA (3) 1.9 0.0019 Adult retinal TTTCCTGCCA (6) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL CCAAAAAAAA (35) 7.7 0.0077 ONL AAAAGAAAAA (21) 5.7 0.0057 ONL CCCAAAAAAA (19) 1.9 0.0019 ONL TTTCACAAAA (3) 1.9 0.0019