Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.276137	Atp5a1	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1	18	18 50.0 cM	11946
Gene Ontology	ATP binding | ATP biosynthesis | ATP synthesis coupled proton transport | extracellular space | hydrogen ion transporter activity | hydrogen-exporting ATPase activity, phosphorylative mechanism | hydrogen-transporting ATP synthase activity, rotational mechanism | hydrogen-transporting ATPase activity, rotational mechanism | hydrolase activity | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | mitochondrion | proton transport | proton-transporting ATP synthase complex (sensu Eukarya) | proton-transporting two-sector ATPase complex
Human Homolog	ATP5A1[ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle] | ATP5A1[ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 231 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AATAAAAGTT (4) 26.1 0.0261 P8 Cb GC GATAGATAAT (5) 21.2 0.0212 P8 Cb GC GTACCTGCCA (5) 4.9 0.0049 P8 Cb GC AAATAAAGTT (5) 3.3 0.0033 P8 Cb GC AATAAAAGCT (4) 3.3 0.0033 P8 Cb GC AATTAAAGTT (2) 3.3 0.0033 P8 Cb GC CCTCTAACAC (3) 3.3 0.0033 P8 Cb GC GCTATTGAAG 3.3 0.0033 P8 Cb GC AAGAGACACC (2) 1.6 0.0016 P8 Cb GC AATAAAAAGT (6) 1.6 0.0016 P8 Cb GC ATCTCCCAGG 1.6 0.0016 P8 Cb GC CTGGGATAGC (2) 1.6 0.0016 P8 Cb GC GAAAGGCCAC (3) 1.6 0.0016 P8 Cb GC GGCTGAGGAA (3) 1.6 0.0016 P8 Cb GC TAAATGCTTA (4) 1.6 0.0016 P8 Cb GC TGGGGAAAAG (5) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AATAAAAGTT (4) 53.2 0.0532 Cb medulloblastoma GATAGATAAT (5) 41.6 0.0416 Cb medulloblastoma AAGAGACACC (2) 9.2 0.0092 Cb medulloblastoma GCTTTTAAAG (3) 4.6 0.0046 Cb medulloblastoma TAAATGCTTA (4) 4.6 0.0046 Cb medulloblastoma TGATTTCTGT 4.6 0.0046 Cb medulloblastoma AATAAAAGTC (3) 2.3 0.0023 Cb medulloblastoma GAGATTTCTT 2.3 0.0023 Cb medulloblastoma GTACCTGCCA (5) 2.3 0.0023 Cb medulloblastoma TGGGGAAAAG (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GATAGATAAT (5) 21.7 0.0217 P8 GC+1d culture AATAAAAGTT (4) 19.4 0.0194 P8 GC+1d culture GAAAGGCCAC (3) 6.8 0.0068 P8 GC+1d culture AAATAAAGTT (5) 2.3 0.0023 P8 GC+1d culture AATTAAAGTT (2) 2.3 0.0023 P8 GC+1d culture CGGGATGCCC (2) 2.3 0.0023 P8 GC+1d culture AAGTCACCAT (3) 1.1 0.0011 P8 GC+1d culture AATAAAAGCT (4) 1.1 0.0011 P8 GC+1d culture GCTATTGAAG 1.1 0.0011 P8 GC+1d culture GTACCTGCCA (5) 1.1 0.0011 P8 GC+1d culture TCCCTTCACT (2) 1.1 0.0011 P8 GC+1d culture TTGAGTTCCA (2) 1.1 0.0011 P8 GC+1d culture TTGAGTTTCA (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GATAGATAAT (5) 26.9 0.0269 P8 GC+SHH+1d culture AATAAAAGTT (4) 25.8 0.0258 P8 GC+SHH+1d culture AATTAAAGTT (2) 5.9 0.0059 P8 GC+SHH+1d culture GTACCTGCCA (5) 5.9 0.0059 P8 GC+SHH+1d culture GAAAGGCCAC (3) 3.5 0.0035 P8 GC+SHH+1d culture AAATAAAGTT (5) 2.3 0.0023 P8 GC+SHH+1d culture GCTATTGAAG 2.3 0.0023 P8 GC+SHH+1d culture TGATTTCTGT 2.3 0.0023 P8 GC+SHH+1d culture AAGTCACCAT (3) 1.2 0.0012 P8 GC+SHH+1d culture GAGATTTCTT 1.2 0.0012 P8 GC+SHH+1d culture TAAATGCTTA (4) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GATAGATAAT (5) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GTACCTGCCA (5) 14.8 0.0148 E15 cortex AATAAAAGTT (4) 9.9 0.0099 E15 cortex GATAGATAAT (5) 4.9 0.0049 E15 cortex TGGGGAAAAG (5) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AATAAAAGTT (4) 9.1 0.0091 P1 cortex ACCCAACATC (3) 9.1 0.0091 P1 cortex ATCTCCCAGG 9.1 0.0091 P1 cortex GATAGATAAT (5) 9.1 0.0091 P1 cortex AATTAAAGTT (2) 4.5 0.0045 P1 cortex CGGGATGCCC (2) 4.5 0.0045 P1 cortex CTGGGATAGC (2) 4.5 0.0045 P1 cortex GCCCCCCCGC (2) 4.5 0.0045 P1 cortex GGAGAGGTAC (2) 4.5 0.0045 P1 cortex GTACCTGCCA (5) 4.5 0.0045 P1 cortex TCCCTTCACT (2) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AATAAAAGTT (4) 21.7 0.0217 Hypothalamus GATAGATAAT (5) 19.9 0.0199 Hypothalamus AAATAAAGTT (5) 3.6 0.0036 Hypothalamus GAAAGGCCAC (3) 3.6 0.0036 Hypothalamus AAGAGACACC (2) 1.8 0.0018 Hypothalamus AATAAAAGTC (3) 1.8 0.0018 Hypothalamus ATCTCCCAGG 1.8 0.0018 Hypothalamus GGAGAGTACT 1.8 0.0018 Hypothalamus TGATTTCTGT 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AATAAAAGTT (4) 24.4 0.0244 E12.5 retina GATAGATAAT (5) 20.7 0.0207 E12.5 retina AAATAAAGTT (5) 1.9 0.0019 E12.5 retina AAGTCGTGCT 1.9 0.0019 E12.5 retina CTGGGATAGC (2) 1.9 0.0019 E12.5 retina GAAAGGCCAC (3) 1.9 0.0019 E12.5 retina GAGATTTCTT 1.9 0.0019 E12.5 retina GCTATTGAAG 1.9 0.0019 E12.5 retina GGAGAGGTAC (2) 1.9 0.0019 E12.5 retina GGTTCCTTTT (7) 1.9 0.0019 E12.5 retina TGGGGAAAAG (5) 1.9 0.0019 E12.5 retina TTGAGTTTCA (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AATAAAAGTT (4) 18.2 0.0182 E14.5 retina GATAGATAAT (5) 12.8 0.0128 E14.5 retina GAAAGGCCAC (3) 9.1 0.0091 E14.5 retina AATTAAAGTT (2) 3.6 0.0036 E14.5 retina GACACACACA (11) 3.6 0.0036 E14.5 retina GGAGAGTACT 3.6 0.0036 E14.5 retina TGATTTCTGT 3.6 0.0036 E14.5 retina AAGTCACCAT (3) 1.8 0.0018 E14.5 retina AAGTCGTGCT 1.8 0.0018 E14.5 retina GCCCCCCCGC (2) 1.8 0.0018 E14.5 retina GGCTGAGGAA (3) 1.8 0.0018 E14.5 retina GTACCTGCCA (5) 1.8 0.0018 E14.5 retina TTGAGTTTCA (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GATAGATAAT (5) 27.2 0.0272 E16.5 retina AATAAAAGTT (4) 25.4 0.0254 E16.5 retina GAAAGGCCAC (3) 9.1 0.0091 E16.5 retina TTGAGTTCCA (2) 5.4 0.0054 E16.5 retina AATTAAAGTT (2) 3.6 0.0036 E16.5 retina GTACCTGCCA (5) 3.6 0.0036 E16.5 retina TGATTTCTGT 3.6 0.0036 E16.5 retina AAATAAAGTT (5) 1.8 0.0018 E16.5 retina AAGTCGTGCT 1.8 0.0018 E16.5 retina ACCCAACATC (3) 1.8 0.0018 E16.5 retina ATTGCCCTTG 1.8 0.0018 E16.5 retina GGAGAGTACT 1.8 0.0018 E16.5 retina GGCTGAGGAA (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina AATAAAAGTT (4) 29.1 0.0291 E18.5 retina GATAGATAAT (5) 29.1 0.0291 E18.5 retina GGTTCCTTTT (7) 5.5 0.0055 E18.5 retina AATTAAAGTT (2) 3.6 0.0036 E18.5 retina GGAGAGTACT 3.6 0.0036 E18.5 retina GTACCTGCCA (5) 3.6 0.0036 E18.5 retina CCTCTAACAC (3) 1.8 0.0018 E18.5 retina GCCCCCCCGC (2) 1.8 0.0018 E18.5 retina TGATTTCTGT 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AATAAAAGTT (4) 11.8 0.0118 P0.5 retina GGAGAGTACT 5.9 0.0059 P0.5 retina GATAGATAAT (5) 3.9 0.0039 P0.5 retina GTACCTGCCA (5) 3.9 0.0039 P0.5 retina TGATTTCTGT 3.9 0.0039 P0.5 retina AATAAAAAGT (6) 2 0.002 P0.5 retina ATCTCCCAGG 2 0.002 P0.5 retina GAAAGGCCAC (3) 2 0.002 P0.5 retina GAGATTTCTT 2 0.002 P0.5 retina GGAGAGGTAC (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AATAAAAGTT (4) 17.6 0.0176 P2.5 retina GATAGATAAT (5) 17.6 0.0176 P2.5 retina GTACCTGCCA (5) 7 0.007 P2.5 retina AATTAAAGTT (2) 3.5 0.0035 P2.5 retina GAAAGGCCAC (3) 3.5 0.0035 P2.5 retina AAGAGACACC (2) 1.8 0.0018 P2.5 retina AAGTCACCAT (3) 1.8 0.0018 P2.5 retina AAGTCGTGCT 1.8 0.0018 P2.5 retina GCTATTGAAG 1.8 0.0018 P2.5 retina GGTTCCTTTT (7) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AATAAAAGTT (4) 35.7 0.0357 P4.5 retina GATAGATAAT (5) 13.9 0.0139 P4.5 retina GTACCTGCCA (5) 7.9 0.0079 P4.5 retina TGGGGAAAAG (5) 4 0.004 P4.5 retina AAATAAAGTT (5) 2 0.002 P4.5 retina AAGAGACACC (2) 2 0.002 P4.5 retina AATTAAAGTT (2) 2 0.002 P4.5 retina ATTGCCCTTG 2 0.002 P4.5 retina CCTCTAACAC (3) 2 0.002 P4.5 retina GAAAGGCCAC (3) 2 0.002 P4.5 retina GCTATTGAAG 2 0.002 P4.5 retina TCCCTTCACT (2) 2 0.002 P4.5 retina TTGAGTTCCA (2) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina AATAAAAGTT (4) 23.3 0.0233 P6.5 retina GATAGATAAT (5) 18.3 0.0183 P6.5 retina GTACCTGCCA (5) 8.3 0.0083 P6.5 retina AAGTCGTGCT 3.3 0.0033 P6.5 retina AATTAAAGTT (2) 3.3 0.0033 P6.5 retina ATCTCCCAGG 3.3 0.0033 P6.5 retina GGAGAGGTAC (2) 3.3 0.0033 P6.5 retina AAATAAAGTT (5) 1.7 0.0017 P6.5 retina AAGAGACACC (2) 1.7 0.0017 P6.5 retina GAAAGGCCAC (3) 1.7 0.0017 P6.5 retina TAAATGCTTA (4) 1.7 0.0017 P6.5 retina TCCCTTCACT (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AATAAAAGTT (4) 37.2 0.0372 P10.5 crx- retina GATAGATAAT (5) 13 0.013 P10.5 crx- retina AATTAAAGTT (2) 9.3 0.0093 P10.5 crx- retina GAAAGGCCAC (3) 7.4 0.0074 P10.5 crx- retina AAGTCACCAT (3) 3.7 0.0037 P10.5 crx- retina AAGAGACACC (2) 1.9 0.0019 P10.5 crx- retina AATAAAAAGT (6) 1.9 0.0019 P10.5 crx- retina AATAAAAGTC (3) 1.9 0.0019 P10.5 crx- retina ATCTCCCAGG 1.9 0.0019 P10.5 crx- retina GGTTCCTTTT (7) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AATAAAAGTT (4) 40.4 0.0404 P10.5 crx+ retina GATAGATAAT (5) 9.6 0.0096 P10.5 crx+ retina GAAAGGCCAC (3) 5.8 0.0058 P10.5 crx+ retina GTACCTGCCA (5) 5.8 0.0058 P10.5 crx+ retina AAATAAAGTT (5) 1.9 0.0019 P10.5 crx+ retina AAGTCACCAT (3) 1.9 0.0019 P10.5 crx+ retina AAGTCGTGCT 1.9 0.0019 P10.5 crx+ retina AATAAAAAGT (6) 1.9 0.0019 P10.5 crx+ retina GGCTGAGGAA (3) 1.9 0.0019 P10.5 crx+ retina TCCCTTCACT (2) 1.9 0.0019 P10.5 crx+ retina TGATTTCTGT 1.9 0.0019 P10.5 crx+ retina TGGGGAAAAG (5) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GATAGATAAT (5) 11.1 0.0111 Adult retinal AATAAAAGTT (4) 9.3 0.0093 Adult retinal ATCTCCCAGG 1.9 0.0019 Adult retinal GAAAGGCCAC (3) 1.9 0.0019 Adult retinal GCTTTTAAAG (3) 1.9 0.0019 Adult retinal GTACCTGCCA (5) 1.9 0.0019 Adult retinal TGATTTCTGT 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GATAGATAAT (5) 24.9 0.0249 ONL AATAAAAGTT (4) 15.3 0.0153 ONL AATTAAAGTT (2) 7.7 0.0077 ONL AAGCTGGATG (4) 3.8 0.0038 ONL GCTTTTAAAG (3) 3.8 0.0038 ONL TTGAGTTCCA (2) 3.8 0.0038 ONL TTGAGTTTCA (3) 3.8 0.0038 ONL AAATAAAGTT (5) 1.9 0.0019 ONL AATAAAAGCT (4) 1.9 0.0019 ONL ATTGCCCTTG 1.9 0.0019 ONL GAAAGGCCAC (3) 1.9 0.0019 ONL GACACACACA (11) 1.9 0.0019 ONL GCTATTGAAG 1.9 0.0019 ONL TAAATGCTTA (4) 1.9 0.0019 ONL TGATTTCTGT 1.9 0.0019