Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277792	Col1a2	procollagen, type I, alpha 2	6	6 0.68 cM	12843
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL1A2[collagen, type I, alpha 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 207 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GGTCCTTTCT (3) 19.6 0.0196 P8 Cb GC GGAAAATGGC (5) 9.8 0.0098 P8 Cb GC GTTCCAAAGA 6.5 0.0065 P8 Cb GC AACATTCGCA 4.9 0.0049 P8 Cb GC AACATTAAAA (5) 3.3 0.0033 P8 Cb GC AACATTCAAA (4) 3.3 0.0033 P8 Cb GC TCTCACTCAC (2) 3.3 0.0033 P8 Cb GC AAAGCCAAGC (4) 1.6 0.0016 P8 Cb GC CGCCTGCTAG 1.6 0.0016 P8 Cb GC CTATAAAGAC (2) 1.6 0.0016 P8 Cb GC GGCAAAAAAG (10) 1.6 0.0016 P8 Cb GC TGAACCAAGA (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GGTCCTTTCT (3) 11.6 0.0116 Cb medulloblastoma GCCTTGGGTT (4) 9.2 0.0092 Cb medulloblastoma GGAAAATGGC (5) 6.9 0.0069 Cb medulloblastoma AGAATAGGAC (6) 2.3 0.0023 Cb medulloblastoma TGTGTTTGTG (12) 2.3 0.0023 Cb medulloblastoma TTTTCTATGC (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GGTCCTTTCT (3) 21.7 0.0217 P8 GC+1d culture TGTGTTTGTG (12) 5.7 0.0057 P8 GC+1d culture GGAAAATGGC (5) 4.6 0.0046 P8 GC+1d culture AACATTCAAA (4) 2.3 0.0023 P8 GC+1d culture AACATTCGCA 2.3 0.0023 P8 GC+1d culture CTATAAAGAC (2) 2.3 0.0023 P8 GC+1d culture GGTTTCTTTT (3) 2.3 0.0023 P8 GC+1d culture TCTCACTCAC (2) 2.3 0.0023 P8 GC+1d culture AAAGGACACA (3) 1.1 0.0011 P8 GC+1d culture CCCTACTTCA (2) 1.1 0.0011 P8 GC+1d culture CGCCTGCTAG 1.1 0.0011 P8 GC+1d culture GACAGCCCTG (4) 1.1 0.0011 P8 GC+1d culture GTTCCAAAGA 1.1 0.0011 P8 GC+1d culture TCTTCTATGC (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GGTCCTTTCT (3) 31.6 0.0316 P8 GC+SHH+1d culture GGAAAATGGC (5) 8.2 0.0082 P8 GC+SHH+1d culture GTTCCAAAGA 3.5 0.0035 P8 GC+SHH+1d culture AACATTCGCA 2.3 0.0023 P8 GC+SHH+1d culture GGCAAAAAAG (10) 2.3 0.0023 P8 GC+SHH+1d culture TGTGTTTGTG (12) 2.3 0.0023 P8 GC+SHH+1d culture AACATTCAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture AGAATAGGAC (6) 1.2 0.0012 P8 GC+SHH+1d culture GAAGGATTCA (2) 1.2 0.0012 P8 GC+SHH+1d culture GGCCTCCTGG (7) 1.2 0.0012 P8 GC+SHH+1d culture GGGACCCAGA (4) 1.2 0.0012 P8 GC+SHH+1d culture GGGCCCTCTG (6) 1.2 0.0012 P8 GC+SHH+1d culture GGTTTCTTTT (3) 1.2 0.0012 P8 GC+SHH+1d culture TCTCACTCAC (2) 1.2 0.0012 3T3 fibroblasts CGCCTGCTAG 427.6 0.4276 3T3 fibroblasts CCCTACTTCA (2) 52.6 0.0526 3T3 fibroblasts GTTCCAAAGA 31.5 0.0315 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GAAGGATTCA (2) 14 0.014 3T3 fibroblasts TCTTCTATGC (2) 14 0.014 3T3 fibroblasts AACATTCGCA 7 0.007 3T3 fibroblasts AACATTCAAA (4) 3.5 0.0035 3T3 fibroblasts GCCTTGGGTT (4) 3.5 0.0035 3T3 fibroblasts GGAAAATGGC (5) 3.5 0.0035 3T3 fibroblasts GGCCTCCTGG (7) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GGCCTCCTGG (7) 24.7 0.0247 E15 cortex GGTCCTTTCT (3) 9.9 0.0099 E15 cortex GACAGCCCTG (4) 4.9 0.0049 E15 cortex GCCTTGGGTT (4) 4.9 0.0049 E15 cortex GGAAAATGGC (5) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GACAGCCCTG (4) 9.1 0.0091 P1 cortex TGTGTTTGTG (12) 9.1 0.0091 P1 cortex GGGACCCAGA (4) 4.5 0.0045 P1 cortex GGTCCTTTCT (3) 4.5 0.0045 P1 cortex GGTTTCTTTT (3) 4.5 0.0045 P1 cortex TTTTCTATGC (3) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GGTCCTTTCT (3) 7.2 0.0072 Hypothalamus GGAAAATGGC (5) 3.6 0.0036 Hypothalamus GGGACCCAGA (4) 3.6 0.0036 Hypothalamus TCTCACTCAC (2) 3.6 0.0036 Hypothalamus AAAGCCAAGC (4) 1.8 0.0018 Hypothalamus AACATTCAAA (4) 1.8 0.0018 Hypothalamus GACAGCCCTG (4) 1.8 0.0018 Hypothalamus GCCTTGGGTT (4) 1.8 0.0018 Hypothalamus GGCCTCCTGG (7) 1.8 0.0018 Hypothalamus TTTTCTATGC (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CCCTACTTCA (2) 13.1 0.0131 E12.5 retina GGAAAATGGC (5) 7.5 0.0075 E12.5 retina GGTCCTTTCT (3) 3.8 0.0038 E12.5 retina AAAGTGGAAG (3) 1.9 0.0019 E12.5 retina AACATTCAAA (4) 1.9 0.0019 E12.5 retina AACATTCGCA 1.9 0.0019 E12.5 retina AGAATAGGAC (6) 1.9 0.0019 E12.5 retina CTATAAAGAC (2) 1.9 0.0019 E12.5 retina GACAGCCCTG (4) 1.9 0.0019 E12.5 retina GGCCTCCTGG (7) 1.9 0.0019 E12.5 retina TGTGTTTGTG (12) 1.9 0.0019 E12.5 retina TTGCTCTCAG (4) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GGTCCTTTCT (3) 16.4 0.0164 E14.5 retina CCCTACTTCA (2) 3.6 0.0036 E14.5 retina GGAAAATGGC (5) 3.6 0.0036 E14.5 retina AACATTAAAA (5) 1.8 0.0018 E14.5 retina AGAATAGGAC (6) 1.8 0.0018 E14.5 retina GAAGGATTCA (2) 1.8 0.0018 E14.5 retina GACCAAGGAG (5) 1.8 0.0018 E14.5 retina GGGGGCTGGG (10) 1.8 0.0018 E14.5 retina GTGGCAGCAG (6) 1.8 0.0018 E14.5 retina TCTCACTCAC (2) 1.8 0.0018 E14.5 retina TTGCTCTCAG (4) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GGTCCTTTCT (3) 10.9 0.0109 E16.5 retina AGAATAGGAC (6) 3.6 0.0036 E16.5 retina CCCTACTTCA (2) 3.6 0.0036 E16.5 retina GGAAAATGGC (5) 3.6 0.0036 E16.5 retina GGGACCCAGA (4) 3.6 0.0036 E16.5 retina TGTGTTTGTG (12) 3.6 0.0036 E16.5 retina AAAGCCAAGC (4) 1.8 0.0018 E16.5 retina GGTTTCTTTT (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GGTCCTTTCT (3) 18.2 0.0182 E18.5 retina GGAAAATGGC (5) 16.4 0.0164 E18.5 retina CCCTACTTCA (2) 7.3 0.0073 E18.5 retina GGGGGCTGGG (10) 3.6 0.0036 E18.5 retina GACCAAGGAG (5) 1.8 0.0018 E18.5 retina GCCTTGGGTT (4) 1.8 0.0018 E18.5 retina GGGACCCAGA (4) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CCCTACTTCA (2) 23.6 0.0236 P0.5 retina GGTCCTTTCT (3) 15.7 0.0157 P0.5 retina GGAAAATGGC (5) 7.9 0.0079 P0.5 retina TGTGTTTGTG (12) 7.9 0.0079 P0.5 retina TCTCACTCAC (2) 5.9 0.0059 P0.5 retina GCCTTGGGTT (4) 2 0.002 P0.5 retina GGCCTCCTGG (7) 2 0.002 P0.5 retina GGGACCCAGA (4) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GGTCCTTTCT (3) 17.6 0.0176 P2.5 retina GGAAAATGGC (5) 7 0.007 P2.5 retina CCCTACTTCA (2) 3.5 0.0035 P2.5 retina GACCAAGGAG (5) 3.5 0.0035 P2.5 retina GGCCTCCTGG (7) 3.5 0.0035 P2.5 retina GTTCCAAAGA 3.5 0.0035 P2.5 retina TGTGTTTGTG (12) 3.5 0.0035 P2.5 retina AAAGGACACA (3) 1.8 0.0018 P2.5 retina AACATTAAAA (5) 1.8 0.0018 P2.5 retina TTGCTCTCAG (4) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GGTCCTTTCT (3) 15.9 0.0159 P4.5 retina CCCTACTTCA (2) 5.9 0.0059 P4.5 retina GGAAAATGGC (5) 5.9 0.0059 P4.5 retina AAAGGACACA (3) 4 0.004 P4.5 retina GACCAAGGAG (5) 4 0.004 P4.5 retina GGCCTCCTGG (7) 4 0.004 P4.5 retina GGGCCCTCTG (6) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GGTCCTTTCT (3) 11.7 0.0117 P6.5 retina GGAAAATGGC (5) 8.3 0.0083 P6.5 retina TGTGTTTGTG (12) 8.3 0.0083 P6.5 retina AAAGGACACA (3) 3.3 0.0033 P6.5 retina TCTCACTCAC (2) 3.3 0.0033 P6.5 retina AACATTAAAA (5) 1.7 0.0017 P6.5 retina CCCTACTTCA (2) 1.7 0.0017 P6.5 retina GACAGCCCTG (4) 1.7 0.0017 P6.5 retina GACCAAGGAG (5) 1.7 0.0017 P6.5 retina GTGGCAGCAG (6) 1.7 0.0017 P6.5 retina TGAACCAAGA (2) 1.7 0.0017 P6.5 retina TTTTCTATGC (3) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GGTCCTTTCT (3) 16.7 0.0167 P10.5 crx- retina AAAGGACACA (3) 3.7 0.0037 P10.5 crx- retina TGTGTTTGTG (12) 3.7 0.0037 P10.5 crx- retina GAAGGATTCA (2) 1.9 0.0019 P10.5 crx- retina GACAGCCCTG (4) 1.9 0.0019 P10.5 crx- retina GGAAAATGGC (5) 1.9 0.0019 P10.5 crx- retina GGGCCCTCTG (6) 1.9 0.0019 P10.5 crx- retina GTGGCAGCAG (6) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GGTCCTTTCT (3) 21.1 0.0211 P10.5 crx+ retina GGAAAATGGC (5) 5.8 0.0058 P10.5 crx+ retina TGTGTTTGTG (12) 5.8 0.0058 P10.5 crx+ retina AACATTCAAA (4) 1.9 0.0019 P10.5 crx+ retina AACATTCGCA 1.9 0.0019 P10.5 crx+ retina AGAATAGGAC (6) 1.9 0.0019 P10.5 crx+ retina CCCTACTTCA (2) 1.9 0.0019 P10.5 crx+ retina GACAGCCCTG (4) 1.9 0.0019 P10.5 crx+ retina GCCTTGGGTT (4) 1.9 0.0019 P10.5 crx+ retina GGGACCCAGA (4) 1.9 0.0019 P10.5 crx+ retina GGGCCCTCTG (6) 1.9 0.0019 P10.5 crx+ retina GGTTTCTTTT (3) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GGTCCTTTCT (3) 13 0.013 Adult retinal AAAGGACACA (3) 3.7 0.0037 Adult retinal AAAGTGGAAG (3) 3.7 0.0037 Adult retinal AGAATAGGAC (6) 3.7 0.0037 Adult retinal GCCTTGGGTT (4) 3.7 0.0037 Adult retinal GGAAAATGGC (5) 3.7 0.0037 Adult retinal GGCCTCCTGG (7) 3.7 0.0037 Adult retinal GACAGCCCTG (4) 1.9 0.0019 Adult retinal GGGCCCTCTG (6) 1.9 0.0019 Adult retinal TGTGTTTGTG (12) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GGGGGCTGGG (10) 9.6 0.0096 ONL GGTCCTTTCT (3) 9.6 0.0096 ONL GGGACCCAGA (4) 1.9 0.0019 ONL TGAACCAAGA (2) 1.9 0.0019 ONL TGTGTTTGTG (12) 1.9 0.0019