Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29405	Rbx1	ring-box 1	15		56438
Gene Ontology	nucleus | protein binding | protein ubiquitination | SCF ubiquitin ligase complex | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	RBX1[ring-box 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 162 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CTTCTCATTT (2) 37.5 0.0375 P8 Cb GC GTCCTTTTTC (2) 8.2 0.0082 P8 Cb GC CAGCAATCTC 4.9 0.0049 P8 Cb GC CAGGCAAAAT (8) 4.9 0.0049 P8 Cb GC CACCACCACT (20) 1.6 0.0016 P8 Cb GC TAGTTAACAG 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma CTTCTCATTT (2) 30.1 0.0301 Cb medulloblastoma GTCCTTTTTC (2) 11.6 0.0116 Cb medulloblastoma TAGTTAACAG 6.9 0.0069 Cb medulloblastoma CAACCGTACA 2.3 0.0023 Cb medulloblastoma CAGCAATCTC 2.3 0.0023 Cb medulloblastoma GAAGGGAGGC (4) 2.3 0.0023 P8 GC+1d culture CTTCTCATTT (2) 38.8 0.0388 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GTCCTTTTTC (2) 29.7 0.0297 P8 GC+1d culture TAGTTAACAG 10.3 0.0103 P8 GC+1d culture CACCACCACT (20) 5.7 0.0057 P8 GC+1d culture CAGCAATCTC 4.6 0.0046 P8 GC+1d culture AGCTAAAATT (2) 2.3 0.0023 P8 GC+1d culture CAACCGTACA 2.3 0.0023 P8 GC+SHH+1d culture CTTCTCATTT (2) 29.3 0.0293 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GTCCTTTTTC (2) 11.7 0.0117 P8 GC+SHH+1d culture TAGTTAACAG 5.9 0.0059 P8 GC+SHH+1d culture CAACCGTACA 3.5 0.0035 P8 GC+SHH+1d culture CAGGCAAAAT (8) 2.3 0.0023 P8 GC+SHH+1d culture AGCTAAAATT (2) 1.2 0.0012 P8 GC+SHH+1d culture CACCACCACT (20) 1.2 0.0012 P8 GC+SHH+1d culture CAGCAATCTC 1.2 0.0012 P8 GC+SHH+1d culture TTTAAAGAAA (9) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CTTCTCATTT (2) 28 0.028 3T3 fibroblasts CAGCAATCTC 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex CTTCTCATTT (2) 14.8 0.0148 E15 cortex CAGCAATCTC 9.9 0.0099 E15 cortex CCCTTTAATC (5) 9.9 0.0099 E15 cortex GTCCTTTTTC (2) 9.9 0.0099 E15 cortex GAAGGGAGGC (4) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex CTTCTCATTT (2) 18.2 0.0182 P1 cortex AGCTAAAATT (2) 4.5 0.0045 P1 cortex CACCACCACT (20) 4.5 0.0045 P1 cortex GTCCTTTTTC (2) 4.5 0.0045 P1 cortex TTTAAAGAAA (9) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus CTTCTCATTT (2) 18.1 0.0181 Hypothalamus GTCCTTTTTC (2) 9.1 0.0091 Hypothalamus CACCACCACT (20) 5.4 0.0054 Hypothalamus TAGTTAACAG 3.6 0.0036 Hypothalamus CAACCGTACA 1.8 0.0018 Hypothalamus CAGCAATCTC 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina CTTCTCATTT (2) 22.5 0.0225 E12.5 retina GTCCTTTTTC (2) 20.7 0.0207 E12.5 retina CACCACCACT (20) 5.6 0.0056 E12.5 retina TAGTTAACAG 3.8 0.0038 E12.5 retina CAACCGTACA 1.9 0.0019 E12.5 retina CAGCAATCTC 1.9 0.0019 E12.5 retina CAGGCAAAAT (8) 1.9 0.0019 E12.5 retina TTTAAAGAAA (9) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina CTTCTCATTT (2) 23.7 0.0237 E14.5 retina CAGGCAAAAT (8) 5.5 0.0055 E14.5 retina GTCCTTTTTC (2) 5.5 0.0055 E14.5 retina CAACCGTACA 3.6 0.0036 E14.5 retina CACCACCACT (20) 3.6 0.0036 E14.5 retina TAGTTAACAG 3.6 0.0036 E14.5 retina TTTAAAGAAA (9) 3.6 0.0036 E14.5 retina AGCTAAAATT (2) 1.8 0.0018 E14.5 retina CAGCAATCTC 1.8 0.0018 E14.5 retina TGGTTGTGGG (6) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina CTTCTCATTT (2) 18.1 0.0181 E16.5 retina GTCCTTTTTC (2) 9.1 0.0091 E16.5 retina TGGTTGTGGG (6) 9.1 0.0091 E16.5 retina CAACCGTACA 1.8 0.0018 E16.5 retina CACCACCACT (20) 1.8 0.0018 E16.5 retina CAGCAATCTC 1.8 0.0018 E16.5 retina CAGGCAAAAT (8) 1.8 0.0018 E16.5 retina CTTTTCATTT (4) 1.8 0.0018 E16.5 retina GTCCTTTTTA (5) 1.8 0.0018 E16.5 retina TAGTTAACAG 1.8 0.0018 E16.5 retina TTTAAAGAAA (9) 1.8 0.0018 E18.5 retina CTTCTCATTT (2) 27.3 0.0273 E18.5 retina GTCCTTTTTC (2) 27.3 0.0273 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina CACCACCACT (20) 5.5 0.0055 E18.5 retina CAGGCAAAAT (8) 5.5 0.0055 E18.5 retina TGGTTGTGGG (6) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina CTTCTCATTT (2) 15.7 0.0157 P0.5 retina GTCCTTTTTC (2) 11.8 0.0118 P0.5 retina CACCACCACT (20) 3.9 0.0039 P0.5 retina GAAGGGAGGC (4) 3.9 0.0039 P0.5 retina CAGGCAAAAT (8) 2 0.002 P0.5 retina TAGTTAACAG 2 0.002 P0.5 retina TTTAAAGAAA (9) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina CTTCTCATTT (2) 24.6 0.0246 P2.5 retina GTCCTTTTTC (2) 19.4 0.0194 P2.5 retina CACCACCACT (20) 5.3 0.0053 P2.5 retina TAGTTAACAG 5.3 0.0053 P2.5 retina CAGGCAAAAT (8) 3.5 0.0035 P2.5 retina CAGCAATCTC 1.8 0.0018 P2.5 retina CCCTTTAATC (5) 1.8 0.0018 P2.5 retina GTCCTTTTTA (5) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CTTCTCATTT (2) 29.7 0.0297 P4.5 retina GTCCTTTTTC (2) 13.9 0.0139 P4.5 retina CACCACCACT (20) 4 0.004 P4.5 retina CAGGCAAAAT (8) 4 0.004 P4.5 retina CAGCAATCTC 2 0.002 P4.5 retina TAGTTAACAG 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina CTTCTCATTT (2) 33.3 0.0333 P6.5 retina GTCCTTTTTC (2) 16.7 0.0167 P6.5 retina CACCACCACT (20) 5 0.005 P6.5 retina TAGTTAACAG 3.3 0.0033 P6.5 retina CAGGCAAAAT (8) 1.7 0.0017 P6.5 retina CTTTTCATTT (4) 1.7 0.0017 P6.5 retina GAAGGGAGGC (4) 1.7 0.0017 P6.5 retina TTTTTGTTTT (9) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina CTTCTCATTT (2) 24.2 0.0242 P10.5 crx- retina GTCCTTTTTC (2) 9.3 0.0093 P10.5 crx- retina TAGTTAACAG 3.7 0.0037 P10.5 crx- retina TGGTTGTGGG (6) 3.7 0.0037 P10.5 crx- retina CACCACCACT (20) 1.9 0.0019 P10.5 crx- retina CTTTTCATTT (4) 1.9 0.0019 P10.5 crx- retina GAAGGGAGGC (4) 1.9 0.0019 P10.5 crx- retina TATGTGGAGA (2) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CTTCTCATTT (2) 17.3 0.0173 P10.5 crx+ retina GTCCTTTTTC (2) 11.5 0.0115 P10.5 crx+ retina CACCACCACT (20) 3.8 0.0038 P10.5 crx+ retina CAACCGTACA 1.9 0.0019 P10.5 crx+ retina CAGCAATCTC 1.9 0.0019 P10.5 crx+ retina CAGGCAAAAT (8) 1.9 0.0019 P10.5 crx+ retina CTTTTCATTT (4) 1.9 0.0019 P10.5 crx+ retina TATGTGGAGA (2) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal CTTCTCATTT (2) 14.8 0.0148 Adult retinal CACCACCACT (20) 9.3 0.0093 Adult retinal GAAGGGAGGC (4) 5.6 0.0056 Adult retinal GTCCTTTTTA (5) 5.6 0.0056 Adult retinal GTCCTTTTTC (2) 3.7 0.0037 Adult retinal CAACCGTACA 1.9 0.0019 Adult retinal CAGCAATCTC 1.9 0.0019 Adult retinal CAGGCAAAAT (8) 1.9 0.0019 Adult retinal TTTAAAGAAA (9) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL CAGGCAAAAT (8) 9.6 0.0096 ONL TGGTTGTGGG (6) 7.7 0.0077 ONL TTTTTGTTTT (9) 7.7 0.0077 ONL CACCACCACT (20) 3.8 0.0038 ONL CTTCTCATTT (2) 3.8 0.0038 ONL GAAGGGAGGC (4) 3.8 0.0038 ONL GTCCTTTTTC (2) 3.8 0.0038 ONL TTTAAAGAAA (9) 1.9 0.0019