Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.305750	Rpl27a	ribosomal protein L27a	7	7 51.55 cM	26451
Gene Ontology	intracellular | protein biosynthesis | ribosome | structural constituent of ribosome
Human Homolog	RPL27A[ribosomal protein L27a]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 264 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CACCACCACA (14) 55.5 0.0555 P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TGAAAAAAAA (81) 27.7 0.0277 P8 Cb GC GCGGTGGCAG (3) 17.9 0.0179 P8 Cb GC GTAGCTCACA (30) 16.3 0.0163 P8 Cb GC CGGCAAAAAA (3) 4.9 0.0049 P8 Cb GC GAAAACTTAA (6) 4.9 0.0049 P8 Cb GC TGTAAAAAAA (12) 4.9 0.0049 P8 Cb GC CCTACCTGCA (5) 3.3 0.0033 P8 Cb GC CCTCCAGCAT 3.3 0.0033 P8 Cb GC TGGAAAAAAA (27) 3.3 0.0033 P8 Cb GC CACACCACAG (5) 1.6 0.0016 P8 Cb GC TTGGAAATCT (9) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TGAAAAAAAA (81) 78.6 0.0786 Cb medulloblastoma TGGAAAAAAA (27) 25.4 0.0254 Cb medulloblastoma GTAGCTCACA (30) 18.5 0.0185 Cb medulloblastoma GCGGTGGCAG (3) 16.2 0.0162 Cb medulloblastoma CACCACCACA (14) 9.2 0.0092 Cb medulloblastoma TGTAAAAAAA (12) 9.2 0.0092 Cb medulloblastoma CCTACCTGCA (5) 6.9 0.0069 Cb medulloblastoma CGGCAAAAAA (3) 6.9 0.0069 Cb medulloblastoma GAAAACTTAA (6) 4.6 0.0046 Cb medulloblastoma GAAAATGTTA 2.3 0.0023 Cb medulloblastoma TGGCAAAAAA (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture CACCACCACA (14) 50.2 0.0502 P8 GC+1d culture GTAGCTCACA (30) 27.4 0.0274 P8 GC+1d culture TGAAAAAAAA (81) 26.3 0.0263 P8 GC+1d culture CGGCAAAAAA (3) 9.1 0.0091 P8 GC+1d culture GCGGTGGCAG (3) 6.8 0.0068 P8 GC+1d culture TGTAAAAAAA (12) 5.7 0.0057 P8 GC+1d culture CCTACCTGCA (5) 3.4 0.0034 P8 GC+1d culture TGGAAAAAAA (27) 2.3 0.0023 P8 GC+1d culture AGACAGCTTC (2) 1.1 0.0011 P8 GC+1d culture CACACCACAG (5) 1.1 0.0011 P8 GC+1d culture TGGTCTTTGC 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TGAAAAAAAA (81) 57.4 0.0574 P8 GC+SHH+1d culture CACCACCACA (14) 30.4 0.0304 P8 GC+SHH+1d culture GTAGCTCACA (30) 15.2 0.0152 P8 GC+SHH+1d culture TGGAAAAAAA (27) 11.7 0.0117 P8 GC+SHH+1d culture TGTAAAAAAA (12) 11.7 0.0117 P8 GC+SHH+1d culture GCGGTGGCAG (3) 10.5 0.0105 P8 GC+SHH+1d culture TGGCAAAAAA (5) 5.9 0.0059 P8 GC+SHH+1d culture CGGCAAAAAA (3) 4.7 0.0047 P8 GC+SHH+1d culture CCTACCTGCA (5) 2.3 0.0023 P8 GC+SHH+1d culture GAAAACTTAA (6) 2.3 0.0023 P8 GC+SHH+1d culture CCTCCAGCAT 1.2 0.0012 P8 GC+SHH+1d culture GAAAATGTTA 1.2 0.0012 3T3 fibroblasts CACCACCACA (14) 287.4 0.2874 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTAGCTCACA (30) 14 0.014 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CACACCACAG (5) 7 0.007 3T3 fibroblasts CCTACCTGCA (5) 7 0.007 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts TGAAAAAAAA (81) 7 0.007 3T3 fibroblasts CCTCCAGCAT 3.5 0.0035 3T3 fibroblasts GCCTATCTGG (3) 3.5 0.0035 3T3 fibroblasts GCGGTGGCAG (3) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CACCACCACA (14) 34.6 0.0346 E15 cortex GTAGCTCACA (30) 29.7 0.0297 E15 cortex TGAAAAAAAA (81) 29.7 0.0297 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex CGGCAAAAAA (3) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGGAAAAAAA (27) 4.9 0.0049 E15 cortex TGTAAAAAAA (12) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex CACCACCACA (14) 27.3 0.0273 P1 cortex GTAGCTCACA (30) 13.6 0.0136 P1 cortex CCTACCTGCA (5) 4.5 0.0045 P1 cortex GAAAATGTTA 4.5 0.0045 P1 cortex TGAAAAAAAA (81) 4.5 0.0045 P1 cortex TGTAAAAAAA (12) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TGAAAAAAAA (81) 36.2 0.0362 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus GTAGCTCACA (30) 29 0.029 Hypothalamus CACCACCACA (14) 18.1 0.0181 Hypothalamus GAAAACTTAA (6) 12.7 0.0127 Hypothalamus CCTCCAGCAT 5.4 0.0054 Hypothalamus TGTAAAAAAA (12) 5.4 0.0054 Hypothalamus CGGCAAAAAA (3) 3.6 0.0036 Hypothalamus GAAAATGTTA 3.6 0.0036 Hypothalamus GCGGTGGCAG (3) 3.6 0.0036 Hypothalamus CCTACCTGCA (5) 1.8 0.0018 Hypothalamus TGGAAAAAAA (27) 1.8 0.0018 Hypothalamus TGGCAAAAAA (5) 1.8 0.0018 Hypothalamus TTGGAAATCT (9) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CACCACCACA (14) 41.3 0.0413 E12.5 retina TGAAAAAAAA (81) 31.9 0.0319 E12.5 retina GTAGCTCACA (30) 30 0.03 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina GCGGTGGCAG (3) 16.9 0.0169 E12.5 retina CCTACCTGCA (5) 7.5 0.0075 E12.5 retina GAAAACTTAA (6) 5.6 0.0056 E12.5 retina TGGAAAAAAA (27) 5.6 0.0056 E12.5 retina TGTAAAAAAA (12) 3.8 0.0038 E12.5 retina CCTCCAGCAT 1.9 0.0019 E12.5 retina CGGCAAAAAA (3) 1.9 0.0019 E12.5 retina GAAAATGTTA 1.9 0.0019 E12.5 retina TGGTCTTTGC 1.9 0.0019 E12.5 retina TTGGAAATCT (9) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TGAAAAAAAA (81) 49.2 0.0492 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina GTAGCTCACA (30) 31 0.031 E14.5 retina TGGAAAAAAA (27) 10.9 0.0109 E14.5 retina CACCACCACA (14) 9.1 0.0091 E14.5 retina CCTACCTGCA (5) 5.5 0.0055 E14.5 retina GAAAACTTAA (6) 5.5 0.0055 E14.5 retina GAAAATGTTA 5.5 0.0055 E14.5 retina GCGGTGGCAG (3) 5.5 0.0055 E14.5 retina TGTAAAAAAA (12) 5.5 0.0055 E14.5 retina CGGCAAAAAA (3) 3.6 0.0036 E14.5 retina AGACAGCTTC (2) 1.8 0.0018 E14.5 retina TAAACGTGTC (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GTAGCTCACA (30) 41.7 0.0417 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina CACCACCACA (14) 18.1 0.0181 E16.5 retina TGAAAAAAAA (81) 16.3 0.0163 E16.5 retina GAAAATGTTA 10.9 0.0109 E16.5 retina GAAAACTTAA (6) 9.1 0.0091 E16.5 retina CCTACCTGCA (5) 3.6 0.0036 E16.5 retina CGGCAAAAAA (3) 3.6 0.0036 E16.5 retina GCGGTGGCAG (3) 3.6 0.0036 E16.5 retina TGGAAAAAAA (27) 3.6 0.0036 E16.5 retina TGGCAAAAAA (5) 3.6 0.0036 E16.5 retina AGACAGCTTC (2) 1.8 0.0018 E16.5 retina TAAACGTGTC (3) 1.8 0.0018 E16.5 retina TGTAAAAAAA (12) 1.8 0.0018 E16.5 retina TTGGAAATCT (9) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina TGAAAAAAAA (81) 74.6 0.0746 E18.5 retina CACCACCACA (14) 23.6 0.0236 E18.5 retina TGGAAAAAAA (27) 18.2 0.0182 E18.5 retina GTAGCTCACA (30) 16.4 0.0164 E18.5 retina TGTAAAAAAA (12) 14.6 0.0146 E18.5 retina GAAAACTTAA (6) 10.9 0.0109 E18.5 retina GCGGTGGCAG (3) 10.9 0.0109 E18.5 retina CCTCCAGCAT 9.1 0.0091 E18.5 retina CGGCAAAAAA (3) 7.3 0.0073 E18.5 retina TGGCAAAAAA (5) 5.5 0.0055 E18.5 retina CCTACCTGCA (5) 3.6 0.0036 E18.5 retina CACACCACAG (5) 1.8 0.0018 E18.5 retina TAAACGTGTC (3) 1.8 0.0018 E18.5 retina TGGTCTTTGC 1.8 0.0018 E18.5 retina TTGGAAATCT (9) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CACCACCACA (14) 41.2 0.0412 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina GTAGCTCACA (30) 25.5 0.0255 P0.5 retina GCGGTGGCAG (3) 15.7 0.0157 P0.5 retina TGAAAAAAAA (81) 15.7 0.0157 P0.5 retina TGGAAAAAAA (27) 11.8 0.0118 P0.5 retina CCTACCTGCA (5) 5.9 0.0059 P0.5 retina CCTCCAGCAT 3.9 0.0039 P0.5 retina CGGCAAAAAA (3) 3.9 0.0039 P0.5 retina GAAAACTTAA (6) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TGTAAAAAAA (12) 3.9 0.0039 P0.5 retina CACACCACAG (5) 2 0.002 P0.5 retina TGGCAAAAAA (5) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina TGAAAAAAAA (81) 42.2 0.0422 P2.5 retina CACCACCACA (14) 24.6 0.0246 P2.5 retina GTAGCTCACA (30) 22.9 0.0229 P2.5 retina TGGAAAAAAA (27) 10.6 0.0106 P2.5 retina GAAAACTTAA (6) 7 0.007 P2.5 retina GCGGTGGCAG (3) 5.3 0.0053 P2.5 retina GAAAATGTTA 3.5 0.0035 P2.5 retina TAAACGTGTC (3) 3.5 0.0035 P2.5 retina TGTAAAAAAA (12) 3.5 0.0035 P2.5 retina CACACCACAG (5) 1.8 0.0018 P2.5 retina CGGCAAAAAA (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGGCAAAAAA (5) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TGAAAAAAAA (81) 43.6 0.0436 P4.5 retina CACCACCACA (14) 25.8 0.0258 P4.5 retina GTAGCTCACA (30) 25.8 0.0258 P4.5 retina TGTAAAAAAA (12) 11.9 0.0119 P4.5 retina GAAAACTTAA (6) 9.9 0.0099 P4.5 retina CGGCAAAAAA (3) 7.9 0.0079 P4.5 retina GCGGTGGCAG (3) 5.9 0.0059 P4.5 retina TAAACGTGTC (3) 5.9 0.0059 P4.5 retina GAAAATGTTA 4 0.004 P4.5 retina TGGCAAAAAA (5) 4 0.004 P4.5 retina CCTACCTGCA (5) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TGGAAAAAAA (27) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TGAAAAAAAA (81) 33.3 0.0333 P6.5 retina CACCACCACA (14) 28.3 0.0283 P6.5 retina GTAGCTCACA (30) 18.3 0.0183 P6.5 retina CGGCAAAAAA (3) 10 0.01 P6.5 retina GCGGTGGCAG (3) 5 0.005 P6.5 retina TGGAAAAAAA (27) 5 0.005 P6.5 retina TGTAAAAAAA (12) 5 0.005 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina CCTACCTGCA (5) 1.7 0.0017 P6.5 retina GAAAACTTAA (6) 1.7 0.0017 P6.5 retina TTGGAAATCT (9) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GTAGCTCACA (30) 16.7 0.0167 P10.5 crx- retina CACCACCACA (14) 13 0.013 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina TGAAAAAAAA (81) 9.3 0.0093 P10.5 crx- retina GAAAATGTTA 5.6 0.0056 P10.5 crx- retina CCTACCTGCA (5) 3.7 0.0037 P10.5 crx- retina TAAACGTGTC (3) 3.7 0.0037 P10.5 crx- retina TGGAAAAAAA (27) 3.7 0.0037 P10.5 crx- retina CGGCAAAAAA (3) 1.9 0.0019 P10.5 crx- retina GCCTATCTGG (3) 1.9 0.0019 P10.5 crx- retina TTGGAAATCT (9) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GTAGCTCACA (30) 28.8 0.0288 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina TGAAAAAAAA (81) 19.2 0.0192 P10.5 crx+ retina CACCACCACA (14) 17.3 0.0173 P10.5 crx+ retina TGTAAAAAAA (12) 7.7 0.0077 P10.5 crx+ retina CGGCAAAAAA (3) 5.8 0.0058 P10.5 crx+ retina GCGGTGGCAG (3) 5.8 0.0058 P10.5 crx+ retina TGGAAAAAAA (27) 5.8 0.0058 P10.5 crx+ retina GAAAACTTAA (6) 3.8 0.0038 P10.5 crx+ retina CCTACCTGCA (5) 1.9 0.0019 P10.5 crx+ retina GAAAATGTTA 1.9 0.0019 P10.5 crx+ retina TGGTCTTTGC 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal GTAGCTCACA (30) 16.7 0.0167 Adult retinal CACCACCACA (14) 13 0.013 Adult retinal TGAAAAAAAA (81) 13 0.013 Adult retinal CCTACCTGCA (5) 3.7 0.0037 Adult retinal TGGAAAAAAA (27) 3.7 0.0037 Adult retinal TGTAAAAAAA (12) 3.7 0.0037 Adult retinal CGGCAAAAAA (3) 1.9 0.0019 Adult retinal GCCTATCTGG (3) 1.9 0.0019 Adult retinal GCGGTGGCAG (3) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TAAACGTGTC (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL GTAGCTCACA (30) 24.9 0.0249 ONL CACCACCACA (14) 23 0.023 ONL TGAAAAAAAA (81) 19.2 0.0192 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TGTAAAAAAA (12) 5.7 0.0057 ONL GCGGTGGCAG (3) 1.9 0.0019 ONL TGGCAAAAAA (5) 1.9 0.0019