Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.316652	Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	13	13 49.0 cM	15357
Gene Ontology	biosynthesis | cholesterol biosynthesis | embryonic development | endoplasmic reticulum | hydroxymethylglutaryl-CoA reductase (NADPH) activity | hydroxymethylglutaryl-CoA reductase (NADPH) activity | integral to membrane | oxidoreductase activity
Human Homolog	HMGCR[3-hydroxy-3-methylglutaryl-Coenzyme A reductase]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 170 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGTTCACA (32) 14.7 0.0147 P8 Cb GC GCACCACGTT (4) 4.9 0.0049 P8 Cb GC TTTTGTACAA 4.9 0.0049 P8 Cb GC AAGACATCTG (6) 1.6 0.0016 P8 Cb GC AATGGCCCTG (2) 1.6 0.0016 P8 Cb GC CCTTTAGTCC (27) 1.6 0.0016 P8 Cb GC CTGCCGCGGC 1.6 0.0016 P8 Cb GC GAAGATTACT (4) 1.6 0.0016 P8 Cb GC GAAGTGGCAG (3) 1.6 0.0016 Cb medulloblastoma GTGGTTCACA (32) 11.6 0.0116 Cb medulloblastoma GAAGTGACAG (5) 9.2 0.0092 Cb medulloblastoma AAGACATCTG (6) 4.6 0.0046 Cb medulloblastoma GAAGATTACT (4) 4.6 0.0046 Cb medulloblastoma GGGCTGGGAA (10) 4.6 0.0046 Cb medulloblastoma CTGCCGCGGC 2.3 0.0023 Cb medulloblastoma GCACCACGTT (4) 2.3 0.0023 Cb medulloblastoma TTTTGTACAA 2.3 0.0023 P8 GC+1d culture GTGGTTCACA (32) 18.3 0.0183 P8 GC+1d culture CCTTTAGTCC (27) 10.3 0.0103 P8 GC+1d culture TTTTGTACAA 6.8 0.0068 P8 GC+1d culture AATGGCCCTG (2) 5.7 0.0057 P8 GC+1d culture CTGCCGCGGC 5.7 0.0057 P8 GC+1d culture GCACCACGTT (4) 4.6 0.0046 P8 GC+1d culture AAGACATCTG (6) 3.4 0.0034 P8 GC+1d culture TGGCTCCATC (4) 2.3 0.0023 P8 GC+SHH+1d culture GTGGTTCACA (32) 31.6 0.0316 P8 GC+SHH+1d culture TTTTGTACAA 8.2 0.0082 P8 GC+SHH+1d culture CTGCCGCGGC 7 0.007 P8 GC+SHH+1d culture AAGACATCTG (6) 3.5 0.0035 P8 GC+SHH+1d culture CCTTTAGTCC (27) 3.5 0.0035 P8 GC+SHH+1d culture TCATTAAAGA (3) 3.5 0.0035 P8 GC+SHH+1d culture AATGGCCCTG (2) 1.2 0.0012 P8 GC+SHH+1d culture GAAGTGACAG (5) 1.2 0.0012 P8 GC+SHH+1d culture GCACCACGTT (4) 1.2 0.0012 P8 GC+SHH+1d culture TGGCTCCATC (4) 1.2 0.0012 3T3 fibroblasts GTGGTTCACA (32) 17.5 0.0175 3T3 fibroblasts GAAGTGACAG (5) 7 0.007 3T3 fibroblasts AATGGCCCTG (2) 3.5 0.0035 E15 cortex AATGGCCCTG (2) 14.8 0.0148 E15 cortex CCTTTAGTCC (27) 9.9 0.0099 E15 cortex AAGACATCTG (6) 4.9 0.0049 E15 cortex ATCAGTGACA (6) 4.9 0.0049 E15 cortex GAAGTGACAG (5) 4.9 0.0049 E15 cortex GTGGTTCACA (32) 4.9 0.0049 P1 cortex CCTTTAGTCC (27) 27.3 0.0273 P1 cortex GTGGTTCACA (32) 27.3 0.0273 P1 cortex TTTTGTACAA 9.1 0.0091 P1 cortex GAAGTGACAG (5) 4.5 0.0045 P1 cortex GCACCACGTT (4) 4.5 0.0045 P1 cortex GGGCTGGGAA (10) 4.5 0.0045 P1 cortex TGGCTCCATC (4) 4.5 0.0045 Hypothalamus AAGACATCTG (6) 12.7 0.0127 Hypothalamus GTGGTTCACA (32) 12.7 0.0127 Hypothalamus GAAGTGACAG (5) 5.4 0.0054 Hypothalamus CCTTTAGTCC (27) 3.6 0.0036 Hypothalamus TTTTGTACAA 3.6 0.0036 Hypothalamus CTGCCGCGGC 1.8 0.0018 Hypothalamus GAAGATTACT (4) 1.8 0.0018 Hypothalamus GCACCACGTT (4) 1.8 0.0018 Hypothalamus TGGCTCCATC (4) 1.8 0.0018 E12.5 retina GTGGTTCACA (32) 28.2 0.0282 E12.5 retina GAAGTGACAG (5) 20.7 0.0207 E12.5 retina AAGACATCTG (6) 9.4 0.0094 E12.5 retina CCTTTAGTCC (27) 5.6 0.0056 E12.5 retina CTGCCGCGGC 5.6 0.0056 E12.5 retina GAAGTGGCAG (3) 3.8 0.0038 E12.5 retina TCATTAAAGA (3) 3.8 0.0038 E12.5 retina AATGGCCCTG (2) 1.9 0.0019 E12.5 retina ATCAGTGACA (6) 1.9 0.0019 E12.5 retina TTTTGTACAA 1.9 0.0019 E14.5 retina GTGGTTCACA (32) 51 0.051 E14.5 retina GAAGTGACAG (5) 31 0.031 E14.5 retina CCTTTAGTCC (27) 14.6 0.0146 E14.5 retina TTTTGTACAA 14.6 0.0146 E14.5 retina AAGACATCTG (6) 5.5 0.0055 E14.5 retina CTGCCGCGGC 3.6 0.0036 E14.5 retina GCACCACGTT (4) 3.6 0.0036 E14.5 retina GGAGCCTCTT (2) 3.6 0.0036 E14.5 retina GGAGGCTCTT (3) 1.8 0.0018 E14.5 retina TCATTAAAGA (3) 1.8 0.0018 E14.5 retina TGGCTCCATC (4) 1.8 0.0018 E16.5 retina GTGGTTCACA (32) 39.8 0.0398 E16.5 retina GAAGTGACAG (5) 23.5 0.0235 E16.5 retina TTTTGTACAA 10.9 0.0109 E16.5 retina CTGCCGCGGC 7.2 0.0072 E16.5 retina AAGACATCTG (6) 5.4 0.0054 E16.5 retina CCTTTAGTCC (27) 5.4 0.0054 E16.5 retina AATGGCCCTG (2) 3.6 0.0036 E16.5 retina ATCAGTGACA (6) 3.6 0.0036 E16.5 retina GCACCACGTT (4) 3.6 0.0036 E16.5 retina GAAGTGGCAG (3) 1.8 0.0018 E16.5 retina GGAGCCTCTT (2) 1.8 0.0018 E18.5 retina GTGGTTCACA (32) 40 0.04 E18.5 retina GAAGTGACAG (5) 27.3 0.0273 E18.5 retina AAGACATCTG (6) 7.3 0.0073 E18.5 retina TTTTGTACAA 7.3 0.0073 E18.5 retina CCTTTAGTCC (27) 5.5 0.0055 E18.5 retina GAAGATTACT (4) 3.6 0.0036 E18.5 retina GCACCACGTT (4) 3.6 0.0036 E18.5 retina AATGGCCCTG (2) 1.8 0.0018 E18.5 retina GAAGTGGCAG (3) 1.8 0.0018 E18.5 retina TCATTAAAGA (3) 1.8 0.0018 P0.5 retina GTGGTTCACA (32) 35.3 0.0353 P0.5 retina GAAGTGACAG (5) 17.7 0.0177 P0.5 retina CCTTTAGTCC (27) 7.9 0.0079 P0.5 retina TCATTAAAGA (3) 5.9 0.0059 P0.5 retina AATGGCCCTG (2) 3.9 0.0039 P0.5 retina GCACCACGTT (4) 3.9 0.0039 P0.5 retina TGGCTCCATC (4) 2 0.002 P2.5 retina GAAGTGACAG (5) 14.1 0.0141 P2.5 retina GTGGTTCACA (32) 12.3 0.0123 P2.5 retina AAGACATCTG (6) 8.8 0.0088 P2.5 retina CCTTTAGTCC (27) 5.3 0.0053 P2.5 retina GCACCACGTT (4) 3.5 0.0035 P2.5 retina TCATTAAAGA (3) 3.5 0.0035 P2.5 retina TTTTGTACAA 3.5 0.0035 P2.5 retina GGAGGCTCTT (3) 1.8 0.0018 P4.5 retina GAAGTGACAG (5) 45.6 0.0456 P4.5 retina GTGGTTCACA (32) 33.7 0.0337 P4.5 retina AAGACATCTG (6) 7.9 0.0079 P4.5 retina GAAGATTACT (4) 5.9 0.0059 P4.5 retina CCTTTAGTCC (27) 4 0.004 P4.5 retina TCATTAAAGA (3) 4 0.004 P4.5 retina TTTTGTACAA 4 0.004 P4.5 retina AATGGCCCTG (2) 2 0.002 P4.5 retina TGGCTCCATC (4) 2 0.002 P6.5 retina GTGGTTCACA (32) 25 0.025 P6.5 retina GAAGTGACAG (5) 18.3 0.0183 P6.5 retina AAGACATCTG (6) 11.7 0.0117 P6.5 retina TCATTAAAGA (3) 10 0.01 P6.5 retina GCACCACGTT (4) 5 0.005 P6.5 retina CCTTTAGTCC (27) 3.3 0.0033 P6.5 retina CTGCCGCGGC 3.3 0.0033 P6.5 retina GGAGGCTCTT (3) 3.3 0.0033 P6.5 retina GAAGATTACT (4) 1.7 0.0017 P10.5 crx- retina GAAGTGACAG (5) 29.7 0.0297 P10.5 crx- retina GTGGTTCACA (32) 20.4 0.0204 P10.5 crx- retina AAGACATCTG (6) 5.6 0.0056 P10.5 crx- retina GCACCACGTT (4) 5.6 0.0056 P10.5 crx- retina TTTTGTACAA 5.6 0.0056 P10.5 crx- retina CCTTTAGTCC (27) 1.9 0.0019 P10.5 crx- retina GAAGTGGCAG (3) 1.9 0.0019 P10.5 crx- retina GGAGGCTCTT (3) 1.9 0.0019 P10.5 crx+ retina GTGGTTCACA (32) 32.7 0.0327 P10.5 crx+ retina GAAGTGACAG (5) 11.5 0.0115 P10.5 crx+ retina GCACCACGTT (4) 7.7 0.0077 P10.5 crx+ retina CCTTTAGTCC (27) 5.8 0.0058 P10.5 crx+ retina CTGCCGCGGC 5.8 0.0058 P10.5 crx+ retina GAAGATTACT (4) 3.8 0.0038 P10.5 crx+ retina AATGGCCCTG (2) 1.9 0.0019 P10.5 crx+ retina ATCAGTGACA (6) 1.9 0.0019 P10.5 crx+ retina GAAGTGGCAG (3) 1.9 0.0019 P10.5 crx+ retina TCATTAAAGA (3) 1.9 0.0019 P10.5 crx+ retina TGGCTCCATC (4) 1.9 0.0019 Adult retinal GTGGTTCACA (32) 33.3 0.0333 Adult retinal AAGACATCTG (6) 5.6 0.0056 Adult retinal TTTTGTACAA 5.6 0.0056 Adult retinal CCTTTAGTCC (27) 3.7 0.0037 Adult retinal CTGCCGCGGC 3.7 0.0037 Adult retinal AATGGCCCTG (2) 1.9 0.0019 Adult retinal GAAGTGACAG (5) 1.9 0.0019 Adult retinal TGGCTCCATC (4) 1.9 0.0019 ONL GTGGTTCACA (32) 32.6 0.0326 ONL GAAGTGACAG (5) 9.6 0.0096 ONL CCTTTAGTCC (27) 7.7 0.0077 ONL TGGCTCCATC (4) 7.7 0.0077 ONL TCATTAAAGA (3) 3.8 0.0038 ONL AATGGCCCTG (2) 1.9 0.0019 ONL CTGCCGCGGC 1.9 0.0019 ONL TTTTGTACAA 1.9 0.0019