Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3181	Arhgef1	Rho guanine nucleotide exchange factor (GEF) 1	7		16801
Gene Ontology	GTPase activator activity | guanyl-nucleotide exchange factor activity | intracellular signaling cascade | Rho guanyl-nucleotide exchange factor activity | Rho protein signal transduction | signal transducer activity
Human Homolog	ARHGEF1[Rho guanine nucleotide exchange factor (GEF) 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGTATGAAA (2) 6.5 0.0065 P8 Cb GC AAGAGAAAGA (17) 4.9 0.0049 P8 Cb GC AAAAAAAAAG (19) 3.3 0.0033 P8 Cb GC AAGAGAAAAA (19) 3.3 0.0033 P8 Cb GC CAGAAGGGAG (3) 1.6 0.0016 P8 Cb GC GGGGAGGGGT (7) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAG (19) 13.9 0.0139 Cb medulloblastoma ATGTATGAAA (2) 6.9 0.0069 Cb medulloblastoma AAAAAAAAAT (25) 4.6 0.0046 Cb medulloblastoma AAGAGAAAGA (17) 4.6 0.0046 Cb medulloblastoma AAGAGAAAAA (19) 2.3 0.0023 Cb medulloblastoma GGGGAGGGGT (7) 2.3 0.0023 P8 GC+1d culture AAGAGAAAGA (17) 9.1 0.0091 P8 GC+1d culture ATGTATGAAA (2) 8 0.008 P8 GC+1d culture AAAAAAAAAT (25) 3.4 0.0034 P8 GC+1d culture AAGAGAAGAG (4) 3.4 0.0034 P8 GC+1d culture AAGAGAAAAA (19) 2.3 0.0023 P8 GC+1d culture CAGAAGGGAG (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAG (19) 1.1 0.0011 P8 GC+1d culture ACCCGAGAGG (14) 1.1 0.0011 P8 GC+SHH+1d culture ATGTATGAAA (2) 16.4 0.0164 P8 GC+SHH+1d culture AAGAGAAAGA (17) 7 0.007 P8 GC+SHH+1d culture AAAAAAAAAG (19) 5.9 0.0059 P8 GC+SHH+1d culture AAAAAAAAAT (25) 5.9 0.0059 P8 GC+SHH+1d culture AAGAGAAAAA (19) 3.5 0.0035 P8 GC+SHH+1d culture CCTCTGTGGC (4) 2.3 0.0023 P8 GC+SHH+1d culture GGGGAGGGGT (7) 2.3 0.0023 P8 GC+SHH+1d culture AACCTGCCTC (3) 1.2 0.0012 P8 GC+SHH+1d culture AAGAGAAGAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTGCTGTGAG 1.2 0.0012 3T3 fibroblasts GGGGAGGGGT (7) 3.5 0.0035 E15 cortex AACCTGCCTC (3) 4.9 0.0049 E15 cortex AAGAGAAGAG (4) 4.9 0.0049 E15 cortex GGGGAGGGGT (7) 4.9 0.0049 P1 cortex AAAAAAAAAG (19) 9.1 0.0091 P1 cortex AAAAAAAAAT (25) 9.1 0.0091 P1 cortex AAGAGAAGAG (4) 9.1 0.0091 P1 cortex AACCTGCCTC (3) 4.5 0.0045 P1 cortex AAGAGAAAGA (17) 4.5 0.0045 Hypothalamus AAGAGAAAGA (17) 14.5 0.0145 Hypothalamus AAAAAAAAAG (19) 5.4 0.0054 Hypothalamus ACCCGAGAGG (14) 3.6 0.0036 Hypothalamus ATGTATGAAA (2) 3.6 0.0036 Hypothalamus CAGAAGGGAG (3) 3.6 0.0036 Hypothalamus CTGAGTTCTC (3) 3.6 0.0036 Hypothalamus GGGGAGGGGT (7) 3.6 0.0036 E12.5 retina ATGTATGAAA (2) 33.8 0.0338 E12.5 retina AAGAGAAAGA (17) 7.5 0.0075 E12.5 retina ACCCGAGAGG (14) 3.8 0.0038 E14.5 retina ATGTATGAAA (2) 41.9 0.0419 E14.5 retina AAGAGAAAGA (17) 14.6 0.0146 E14.5 retina AAAAAAAAAT (25) 5.5 0.0055 E14.5 retina AACCTGCCTC (3) 1.8 0.0018 E14.5 retina ACCCGAGAGG (14) 1.8 0.0018 E14.5 retina CTGAGTTCTC (3) 1.8 0.0018 E14.5 retina GGGGAGGGGT (7) 1.8 0.0018 E14.5 retina TTGCTGTGAG 1.8 0.0018 E16.5 retina ATGTATGAAA (2) 12.7 0.0127 E16.5 retina ACCCGAGAGG (14) 5.4 0.0054 E16.5 retina AAAAAAAAAT (25) 1.8 0.0018 E16.5 retina AAGAGAAAAA (19) 1.8 0.0018 E16.5 retina AAGAGAAAGA (17) 1.8 0.0018 E16.5 retina GGGGAGGGGT (7) 1.8 0.0018 E16.5 retina TTGCTGTGAG 1.8 0.0018 E18.5 retina ATGTATGAAA (2) 34.6 0.0346 E18.5 retina AAGAGAAAGA (17) 16.4 0.0164 E18.5 retina AAAAAAAAAT (25) 7.3 0.0073 E18.5 retina AAAAAAAAAG (19) 5.5 0.0055 E18.5 retina AAGAGAAAAA (19) 1.8 0.0018 P0.5 retina AAAAAAAAAT (25) 3.9 0.0039 P0.5 retina AAGAGAAGAG (4) 3.9 0.0039 P0.5 retina ACCCGAGAGG (14) 3.9 0.0039 P0.5 retina ATGTATGAAA (2) 2 0.002 P2.5 retina ATGTATGAAA (2) 22.9 0.0229 P2.5 retina AAGAGAAAGA (17) 8.8 0.0088 P2.5 retina AAAAAAAAAG (19) 3.5 0.0035 P2.5 retina AAAAAAAAAT (25) 3.5 0.0035 P2.5 retina AAGAGAAGAG (4) 1.8 0.0018 P4.5 retina ATGTATGAAA (2) 29.7 0.0297 P4.5 retina AAAAAAAAAG (19) 13.9 0.0139 P4.5 retina AAGAGAAAGA (17) 5.9 0.0059 P4.5 retina AAAAAAAAAT (25) 4 0.004 P4.5 retina AACCTGCCTC (3) 2 0.002 P4.5 retina AAGAGAAAAA (19) 2 0.002 P4.5 retina CAGAAGGGAG (3) 2 0.002 P6.5 retina ATGTATGAAA (2) 13.3 0.0133 P6.5 retina AAAAAAAAAG (19) 8.3 0.0083 P6.5 retina AAGAGAAAGA (17) 5 0.005 P6.5 retina AAGAGAAGAG (4) 1.7 0.0017 P10.5 crx- retina AAGAGAAAGA (17) 9.3 0.0093 P10.5 crx- retina ATGTATGAAA (2) 7.4 0.0074 P10.5 crx- retina AAAAAAAAAT (25) 3.7 0.0037 P10.5 crx- retina AAAAAAAAAG (19) 1.9 0.0019 P10.5 crx- retina AAGAGAAAAA (19) 1.9 0.0019 P10.5 crx- retina CTGAGTTCTC (3) 1.9 0.0019 P10.5 crx+ retina ATGTATGAAA (2) 21.1 0.0211 P10.5 crx+ retina AAGAGAAAGA (17) 13.5 0.0135 P10.5 crx+ retina AAAAAAAAAG (19) 7.7 0.0077 P10.5 crx+ retina AACCTGCCTC (3) 1.9 0.0019 P10.5 crx+ retina CCTCTGTGGC (4) 1.9 0.0019 P10.5 crx+ retina TTGCTGTGAG 1.9 0.0019 Adult retinal ATGTATGAAA (2) 7.4 0.0074 Adult retinal AAGAGAAAGA (17) 5.6 0.0056 Adult retinal AAGAGAAGAG (4) 5.6 0.0056 Adult retinal AAAAAAAAAG (19) 1.9 0.0019 Adult retinal AAAAAAAAAT (25) 1.9 0.0019 Adult retinal CAGAAGGGAG (3) 1.9 0.0019 ONL AAGAGAAAGA (17) 13.4 0.0134 ONL ACCCGAGAGG (14) 5.7 0.0057 ONL ATGTATGAAA (2) 5.7 0.0057 ONL AAAAAAAAAG (19) 1.9 0.0019 ONL AAAAAAAAAT (25) 1.9 0.0019