Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3819	Col12a1	procollagen, type XII, alpha 1	9	9 43.0 cM	12816
Mm.3819	AW743884	expressed sequence AW743884	9		102813
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 173 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGCCGCGTGT (3) 6.5 0.0065 P8 Cb GC GGACCCGGAA (7) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC TGGAAAAATA (5) 3.3 0.0033 P8 Cb GC AATCTGAGGA (2) 1.6 0.0016 P8 Cb GC GAATAATGAA (4) 1.6 0.0016 P8 Cb GC GTGGCTCTGT (8) 1.6 0.0016 Cb medulloblastoma TGCCCATCAG (2) 46.2 0.0462 Cb medulloblastoma ATAAAAAAGA (6) 4.6 0.0046 Cb medulloblastoma GTGGCTCTGT (8) 4.6 0.0046 Cb medulloblastoma TGCATCAAGG (8) 4.6 0.0046 Cb medulloblastoma ATGCTGTATA (3) 2.3 0.0023 Cb medulloblastoma CAGAATGCTG (2) 2.3 0.0023 Cb medulloblastoma CAGATGTATG (4) 2.3 0.0023 Cb medulloblastoma TACATACTCC (6) 2.3 0.0023 Cb medulloblastoma TGCCGCGTGT (3) 2.3 0.0023 Cb medulloblastoma TGGAAAAATA (5) 2.3 0.0023 Cb medulloblastoma TTTGGCAAAA (7) 2.3 0.0023 Cb medulloblastoma TTTTAATGAA (4) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture TGCCCATCAG (2) 4.6 0.0046 P8 GC+1d culture TGCCGCGTGT (3) 3.4 0.0034 P8 GC+1d culture ATAAAAAAGA (6) 2.3 0.0023 P8 GC+1d culture CAGAATGCTG (2) 2.3 0.0023 P8 GC+1d culture CTGTGGAATG (3) 2.3 0.0023 P8 GC+1d culture GGACCCGGAA (7) 2.3 0.0023 P8 GC+1d culture GTGGCTCTGT (8) 2.3 0.0023 P8 GC+1d culture ATGCTGTATA (3) 1.1 0.0011 P8 GC+1d culture CAGACCAGGC (3) 1.1 0.0011 P8 GC+1d culture CCTGTGAGGG (4) 1.1 0.0011 P8 GC+1d culture GCCCCGCCCC (5) 1.1 0.0011 P8 GC+1d culture TACAAGGCCT (6) 1.1 0.0011 P8 GC+1d culture TTTGGCAAAA (7) 1.1 0.0011 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture ATGCTGTATA (3) 3.5 0.0035 P8 GC+SHH+1d culture CCTGTGAGGG (4) 3.5 0.0035 P8 GC+SHH+1d culture GGACCCGGAA (7) 3.5 0.0035 P8 GC+SHH+1d culture ATAAAAAAGA (6) 2.3 0.0023 P8 GC+SHH+1d culture CAGATGTATG (4) 2.3 0.0023 P8 GC+SHH+1d culture GAATAATGAA (4) 2.3 0.0023 P8 GC+SHH+1d culture GTGGCTCTGT (8) 2.3 0.0023 P8 GC+SHH+1d culture TGCCGCGTGT (3) 2.3 0.0023 P8 GC+SHH+1d culture ACGCTTGGTG (3) 1.2 0.0012 P8 GC+SHH+1d culture CAGAATGCTG (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGTGGAATG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGCCCATCAG (2) 1.2 0.0012 P8 GC+SHH+1d culture TGGAAAAATA (5) 1.2 0.0012 P8 GC+SHH+1d culture TTTGGCAAAA (7) 1.2 0.0012 3T3 fibroblasts CCTGTGAGGG (4) 7 0.007 3T3 fibroblasts GGACCCGGAA (7) 3.5 0.0035 3T3 fibroblasts GTGGCTCTGT (8) 3.5 0.0035 3T3 fibroblasts TACAAGGCCT (6) 3.5 0.0035 E15 cortex TGCCGCGTGT (3) 9.9 0.0099 E15 cortex GTGGCTCTGT (8) 4.9 0.0049 E15 cortex TGCATCAAGG (8) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex CAGATGTATG (4) 13.6 0.0136 P1 cortex AATCTGAGGA (2) 4.5 0.0045 P1 cortex CAGAATGCTG (2) 4.5 0.0045 P1 cortex GCCCCGCCCC (5) 4.5 0.0045 P1 cortex TTTGGCAAAA (7) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TGCCCATCAG (2) 5.4 0.0054 Hypothalamus CAGAATGCTG (2) 3.6 0.0036 Hypothalamus TACATACTCC (6) 3.6 0.0036 Hypothalamus ATAAAAAAGA (6) 1.8 0.0018 Hypothalamus CAGATGTATG (4) 1.8 0.0018 Hypothalamus CTGTGGAATG (3) 1.8 0.0018 Hypothalamus GGACCCGGAA (7) 1.8 0.0018 Hypothalamus TGCCGCGTGT (3) 1.8 0.0018 Hypothalamus TTTACAAAAA (8) 1.8 0.0018 Hypothalamus TTTTAATGAA (4) 1.8 0.0018 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GGACCCGGAA (7) 5.6 0.0056 E12.5 retina ATAAAAAAGA (6) 1.9 0.0019 E12.5 retina CAGAATGCTG (2) 1.9 0.0019 E12.5 retina TGCCCATCAG (2) 1.9 0.0019 E12.5 retina TGCCGCGTGT (3) 1.9 0.0019 E12.5 retina TTTTAATGAA (4) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GGACCCGGAA (7) 7.3 0.0073 E14.5 retina AATCTGAGGA (2) 1.8 0.0018 E14.5 retina ATGCTGTATA (3) 1.8 0.0018 E16.5 retina GGACCCGGAA (7) 12.7 0.0127 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina TTTACAAAAA (8) 3.6 0.0036 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina CCCCACCCTT (3) 1.8 0.0018 E16.5 retina GCCCCGCCCC (5) 1.8 0.0018 E18.5 retina GGACCCGGAA (7) 10.9 0.0109 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GCCCCGCCCC (5) 3.6 0.0036 E18.5 retina CAGAATGCTG (2) 1.8 0.0018 E18.5 retina GAATAATGAA (4) 1.8 0.0018 E18.5 retina TGCCCATCAG (2) 1.8 0.0018 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina CAGAATGCTG (2) 3.9 0.0039 P0.5 retina GGACCCGGAA (7) 3.9 0.0039 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina CTGTGGAATG (3) 2 0.002 P0.5 retina GTGGCTCTGT (8) 2 0.002 P0.5 retina TGCCCATCAG (2) 2 0.002 P0.5 retina TGCCGCGTGT (3) 2 0.002 P2.5 retina GGACCCGGAA (7) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina CAGAATGCTG (2) 5.3 0.0053 P2.5 retina TGCCGCGTGT (3) 3.5 0.0035 P2.5 retina AACAAGTAGA (3) 1.8 0.0018 P2.5 retina ACGCTTGGTG (3) 1.8 0.0018 P2.5 retina ATAAAAAAGA (6) 1.8 0.0018 P2.5 retina CAGAATGTGT (5) 1.8 0.0018 P2.5 retina CAGATGTATG (4) 1.8 0.0018 P2.5 retina CCCCACCCTT (3) 1.8 0.0018 P2.5 retina GTGGCTCTGT (8) 1.8 0.0018 P2.5 retina TGCCCATCAG (2) 1.8 0.0018 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CAGAATGCTG (2) 4 0.004 P4.5 retina GTGGCTCTGT (8) 4 0.004 P4.5 retina TGCCGCGTGT (3) 4 0.004 P4.5 retina ATAAAAAAGA (6) 2 0.002 P4.5 retina GCCCCGCCCC (5) 2 0.002 P4.5 retina GGACCCGGAA (7) 2 0.002 P4.5 retina TTTTAATGAA (4) 2 0.002 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina CAGAATGCTG (2) 5 0.005 P6.5 retina GGACCCGGAA (7) 5 0.005 P6.5 retina ATAAAAAAGA (6) 3.3 0.0033 P6.5 retina GTGGCTCTGT (8) 3.3 0.0033 P6.5 retina AACAAGTAGA (3) 1.7 0.0017 P6.5 retina CAGATGTATG (4) 1.7 0.0017 P6.5 retina CTGTGGAATG (3) 1.7 0.0017 P6.5 retina TGCCGCGTGT (3) 1.7 0.0017 P6.5 retina TTTACAAAAA (8) 1.7 0.0017 P6.5 retina TTTTAATGAA (4) 1.7 0.0017 P10.5 crx- retina CAGAATGCTG (2) 5.6 0.0056 P10.5 crx- retina GGACCCGGAA (7) 5.6 0.0056 P10.5 crx- retina AATCTGAGGA (2) 1.9 0.0019 P10.5 crx- retina ATAAAAAAGA (6) 1.9 0.0019 P10.5 crx- retina CAGATGTATG (4) 1.9 0.0019 P10.5 crx- retina CTGTGGAATG (3) 1.9 0.0019 P10.5 crx- retina GTGGCTCTGT (8) 1.9 0.0019 P10.5 crx- retina TGCCCATCAG (2) 1.9 0.0019 P10.5 crx- retina TGCCGCGTGT (3) 1.9 0.0019 P10.5 crx+ retina GGACCCGGAA (7) 13.5 0.0135 P10.5 crx+ retina TGCCCATCAG (2) 13.5 0.0135 P10.5 crx+ retina GTGGCTCTGT (8) 9.6 0.0096 P10.5 crx+ retina CAGAATGCTG (2) 5.8 0.0058 P10.5 crx+ retina TGCCGCGTGT (3) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina AACAAGTAGA (3) 1.9 0.0019 P10.5 crx+ retina AATCTGAGGA (2) 1.9 0.0019 P10.5 crx+ retina ACGCTTGGTG (3) 1.9 0.0019 P10.5 crx+ retina ATGCTGTATA (3) 1.9 0.0019 P10.5 crx+ retina CAGACCAGGC (3) 1.9 0.0019 P10.5 crx+ retina CAGATGTATG (4) 1.9 0.0019 P10.5 crx+ retina TACAAGGCCT (6) 1.9 0.0019 P10.5 crx+ retina TGCATCAAGG (8) 1.9 0.0019 Adult retinal CAGAATGCTG (2) 13 0.013 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal GGACCCGGAA (7) 3.7 0.0037 Adult retinal CAGAATGTGT (5) 1.9 0.0019 Adult retinal CAGATGTATG (4) 1.9 0.0019 Adult retinal GCCCCGCCCC (5) 1.9 0.0019 Adult retinal TGCCCATCAG (2) 1.9 0.0019 ONL ATAAAAAAGA (6) 5.7 0.0057 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL CAGAATGTGT (5) 1.9 0.0019 ONL CAGACCAGGC (3) 1.9 0.0019 ONL CAGATGTATG (4) 1.9 0.0019 ONL GTGGCTCTGT (8) 1.9 0.0019