Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4071	Lamr1	laminin receptor 1 (ribosomal protein SA)	9	9 F4 (9 71.0 cM)	16785
Mm.4071	Rnu108	RNA, U108 small nucleolar			104433
Gene Ontology	biological_process unknown | small nucleolar ribonucleoprotein complex
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 7 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 202 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTGATCTTT (2) 27.7 0.0277 P8 Cb GC GGGGGAATTT (3) 13.1 0.0131 P8 Cb GC TGTCATCTAG (3) 11.4 0.0114 P8 Cb GC CAACAACAAG (2) 6.5 0.0065 P8 Cb GC GGATGGCAAT (2) 4.9 0.0049 P8 Cb GC AAAAAGAAAA (19) 1.6 0.0016 P8 Cb GC ACCTCCCAGG (2) 1.6 0.0016 P8 Cb GC CAACAACAAA (5) 1.6 0.0016 P8 Cb GC CCTGAACTTT (4) 1.6 0.0016 P8 Cb GC CTGCCAGCTG (2) 1.6 0.0016 P8 Cb GC GAGCCACGGC (4) 1.6 0.0016 P8 Cb GC GATGGCCTGA (6) 1.6 0.0016 P8 Cb GC TCGAGTGGCG (3) 1.6 0.0016 Cb medulloblastoma GGGGGAATTT (3) 9.2 0.0092 Cb medulloblastoma TGTCATCTAG (3) 9.2 0.0092 Cb medulloblastoma CAACAACAAG (2) 4.6 0.0046 Cb medulloblastoma GCTGTCTTAC (4) 4.6 0.0046 Cb medulloblastoma GGATGGCAAT (2) 4.6 0.0046 Cb medulloblastoma AAAAAGAAAA (19) 2.3 0.0023 Cb medulloblastoma AGCTGCTGTG (5) 2.3 0.0023 Cb medulloblastoma CCTGATCTTT (2) 2.3 0.0023 Cb medulloblastoma CCTTGATCTT (4) 2.3 0.0023 Cb medulloblastoma CTGCCAGCTG (2) 2.3 0.0023 Cb medulloblastoma GAGCCACGGC (4) 2.3 0.0023 Cb medulloblastoma TCGAGTGGCG (3) 2.3 0.0023 P8 GC+1d culture CCTGATCTTT (2) 38.8 0.0388 P8 GC+1d culture CCTGAACTTT (4) 25.1 0.0251 P8 GC+1d culture GGGGGAATTT (3) 14.8 0.0148 P8 GC+1d culture TGTCATCTAG (3) 14.8 0.0148 P8 GC+1d culture CAACAACAAA (5) 5.7 0.0057 P8 GC+1d culture GGATGGCAAT (2) 2.3 0.0023 P8 GC+1d culture AAAAAGAAAA (19) 1.1 0.0011 P8 GC+1d culture CCTGATCCTT (3) 1.1 0.0011 P8 GC+1d culture CGGAGTACTT (2) 1.1 0.0011 P8 GC+1d culture GAGCCACGGC (4) 1.1 0.0011 P8 GC+1d culture GCTGTCTTAC (4) 1.1 0.0011 P8 GC+1d culture TCACTGAGTG (3) 1.1 0.0011 P8 GC+SHH+1d culture CCTGATCTTT (2) 56.2 0.0562 P8 GC+SHH+1d culture TGTCATCTAG (3) 23.4 0.0234 P8 GC+SHH+1d culture GGATGGCAAT (2) 11.7 0.0117 P8 GC+SHH+1d culture GGGGGAATTT (3) 11.7 0.0117 P8 GC+SHH+1d culture CCTGAACTTT (4) 9.4 0.0094 P8 GC+SHH+1d culture CGGAGTACTT (2) 3.5 0.0035 P8 GC+SHH+1d culture GAGCCACGGC (4) 3.5 0.0035 P8 GC+SHH+1d culture AAAAAGAAAA (19) 2.3 0.0023 P8 GC+SHH+1d culture CAACAACAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture CCTGATCCTT (3) 1.2 0.0012 P8 GC+SHH+1d culture CCTTGATCTT (4) 1.2 0.0012 P8 GC+SHH+1d culture GCTGTCTTAC (4) 1.2 0.0012 3T3 fibroblasts CCTGATCTTT (2) 133.2 0.1332 3T3 fibroblasts TGTCATCTAG (3) 73.6 0.0736 3T3 fibroblasts GGATGGCAAT (2) 31.5 0.0315 3T3 fibroblasts GATGGCCTGA (6) 7 0.007 3T3 fibroblasts CGGAGTACTT (2) 3.5 0.0035 3T3 fibroblasts GGCTGTGTTC (3) 3.5 0.0035 3T3 fibroblasts GGGGGAATTT (3) 3.5 0.0035 E15 cortex CCTGATCTTT (2) 64.3 0.0643 E15 cortex CCTGAACTTT (4) 14.8 0.0148 E15 cortex CCTGTCTTAC (6) 9.9 0.0099 E15 cortex CGAGGTACTA (2) 4.9 0.0049 E15 cortex GTCCTACTGA (2) 4.9 0.0049 E15 cortex TCACTGAGTG (3) 4.9 0.0049 E15 cortex TGTCATCTAG (3) 4.9 0.0049 P1 cortex CCTGATCTTT (2) 54.5 0.0545 P1 cortex CCTGAACTTT (4) 13.6 0.0136 P1 cortex GGGGGAATTT (3) 9.1 0.0091 P1 cortex TGTCATCTAG (3) 9.1 0.0091 P1 cortex CCTGTCTTAC (6) 4.5 0.0045 P1 cortex GCTGTCTTAC (4) 4.5 0.0045 P1 cortex GGATGGCAAT (2) 4.5 0.0045 Hypothalamus TGTCATCTAG (3) 106.9 0.1069 Hypothalamus CCTGATCTTT (2) 9.1 0.0091 Hypothalamus CCTGAACTTT (4) 5.4 0.0054 Hypothalamus CGAGGTACTA (2) 5.4 0.0054 Hypothalamus AGTGGGTGGG (3) 3.6 0.0036 Hypothalamus CGGAGTACTT (2) 3.6 0.0036 Hypothalamus GCTGTCTTAC (4) 3.6 0.0036 Hypothalamus AGGTCCCCGA (5) 1.8 0.0018 Hypothalamus CCCACCATTG (2) 1.8 0.0018 Hypothalamus GAGCCACGGC (4) 1.8 0.0018 Hypothalamus GGATGGCAAT (2) 1.8 0.0018 Hypothalamus GGCTGTGTTC (3) 1.8 0.0018 Hypothalamus TCACTGAGTG (3) 1.8 0.0018 Hypothalamus TCGAGTGGCG (3) 1.8 0.0018 E12.5 retina CCTGATCTTT (2) 58.2 0.0582 E12.5 retina TGTCATCTAG (3) 18.8 0.0188 E12.5 retina GGATGGCAAT (2) 9.4 0.0094 E12.5 retina CAACAACAAA (5) 7.5 0.0075 E12.5 retina CGGAGTACTT (2) 3.8 0.0038 E12.5 retina GGGGGAATTT (3) 3.8 0.0038 E12.5 retina CCTGAACTTT (4) 1.9 0.0019 E12.5 retina CCTTGATCTT (4) 1.9 0.0019 E12.5 retina GAGCCACGGC (4) 1.9 0.0019 E14.5 retina CCTGATCTTT (2) 14.6 0.0146 E14.5 retina TGTCATCTAG (3) 9.1 0.0091 E14.5 retina CGAGGTACTA (2) 7.3 0.0073 E14.5 retina GGATGGCAAT (2) 7.3 0.0073 E14.5 retina GGGGGAATTT (3) 7.3 0.0073 E14.5 retina CGGAGTACTT (2) 5.5 0.0055 E14.5 retina CACAACCAGG (4) 1.8 0.0018 E14.5 retina CCTTGATCTT (4) 1.8 0.0018 E14.5 retina CTGCCAGCTG (2) 1.8 0.0018 E14.5 retina GGATGGAATG (7) 1.8 0.0018 E14.5 retina GTCCTACTGA (2) 1.8 0.0018 E14.5 retina TGCCTGAGCT (4) 1.8 0.0018 E16.5 retina CCTGATCTTT (2) 23.5 0.0235 E16.5 retina TGTCATCTAG (3) 19.9 0.0199 E16.5 retina GGATGGCAAT (2) 10.9 0.0109 E16.5 retina CCTGAACTTT (4) 7.2 0.0072 E16.5 retina CGGAGTACTT (2) 7.2 0.0072 E16.5 retina CGAGGTACTA (2) 5.4 0.0054 E16.5 retina AGGTCCCCGA (5) 3.6 0.0036 E16.5 retina GGGGGAATTT (3) 3.6 0.0036 E16.5 retina AAAAAGAAAA (19) 1.8 0.0018 E16.5 retina AGTGGGTGGG (3) 1.8 0.0018 E16.5 retina CACAACCAGG (4) 1.8 0.0018 E16.5 retina CTGCCAGCTG (2) 1.8 0.0018 E18.5 retina GGGGGAATTT (3) 21.8 0.0218 E18.5 retina CCTGATCTTT (2) 16.4 0.0164 E18.5 retina TGTCATCTAG (3) 12.7 0.0127 E18.5 retina AGCTGCTGTG (5) 1.8 0.0018 E18.5 retina CCTGAACTTT (4) 1.8 0.0018 E18.5 retina GAGCCACGGC (4) 1.8 0.0018 E18.5 retina GATGGCCTGA (6) 1.8 0.0018 P0.5 retina CCTGATCTTT (2) 70.7 0.0707 P0.5 retina TGTCATCTAG (3) 33.4 0.0334 P0.5 retina GGATGGCAAT (2) 9.8 0.0098 P0.5 retina GGGGGAATTT (3) 9.8 0.0098 P0.5 retina CCTGAACTTT (4) 5.9 0.0059 P0.5 retina AAAAAGAAAA (19) 3.9 0.0039 P0.5 retina CAACAACAAA (5) 3.9 0.0039 P0.5 retina ACCTCCCAGG (2) 2 0.002 P0.5 retina CAACAACAAG (2) 2 0.002 P0.5 retina CGGAGTACTT (2) 2 0.002 P0.5 retina GCTGTCTTAC (4) 2 0.002 P0.5 retina GGATGGAATG (7) 2 0.002 P0.5 retina GGCTGTGTTC (3) 2 0.002 P2.5 retina CCTGATCTTT (2) 22.9 0.0229 P2.5 retina TGTCATCTAG (3) 14.1 0.0141 P2.5 retina GGGGGAATTT (3) 12.3 0.0123 P2.5 retina AAAAAGAAAA (19) 3.5 0.0035 P2.5 retina CAACAACAAA (5) 1.8 0.0018 P2.5 retina CAACAACAAG (2) 1.8 0.0018 P2.5 retina CACAACCAGG (4) 1.8 0.0018 P2.5 retina CCTGAACTTT (4) 1.8 0.0018 P2.5 retina CCTTGATCTT (4) 1.8 0.0018 P2.5 retina CGGAGTACTT (2) 1.8 0.0018 P2.5 retina GTCCTACTGA (2) 1.8 0.0018 P2.5 retina TGCCTGAGCT (4) 1.8 0.0018 P4.5 retina TGTCATCTAG (3) 19.8 0.0198 P4.5 retina CCTGATCTTT (2) 11.9 0.0119 P4.5 retina GGGGGAATTT (3) 7.9 0.0079 P4.5 retina AAAAAGAAAA (19) 4 0.004 P4.5 retina CAACAACAAA (5) 4 0.004 P4.5 retina AGCTGCTGTG (5) 2 0.002 P4.5 retina CCTGAACTTT (4) 2 0.002 P4.5 retina CCTGATCCTT (3) 2 0.002 P4.5 retina CCTTGATCTT (4) 2 0.002 P4.5 retina CGGAGTACTT (2) 2 0.002 P4.5 retina GGATGGAATG (7) 2 0.002 P4.5 retina GGATGGCAAT (2) 2 0.002 P4.5 retina TGCCTGAGCT (4) 2 0.002 P6.5 retina TGTCATCTAG (3) 33.3 0.0333 P6.5 retina CCTGATCTTT (2) 18.3 0.0183 P6.5 retina GGGGGAATTT (3) 11.7 0.0117 P6.5 retina CCCACCATTG (2) 3.3 0.0033 P6.5 retina CCTTGATCTT (4) 3.3 0.0033 P6.5 retina AGTGGGTGGG (3) 1.7 0.0017 P6.5 retina CAACAACAAA (5) 1.7 0.0017 P6.5 retina CACAACCAGG (4) 1.7 0.0017 P6.5 retina CGGAGTACTT (2) 1.7 0.0017 P10.5 crx- retina CCTGATCTTT (2) 26 0.026 P10.5 crx- retina CCTTGATCTT (4) 9.3 0.0093 P10.5 crx- retina GGATGGCAAT (2) 7.4 0.0074 P10.5 crx- retina CAACAACAAA (5) 5.6 0.0056 P10.5 crx- retina CCTGAACTTT (4) 3.7 0.0037 P10.5 crx- retina CGAGGTACTA (2) 3.7 0.0037 P10.5 crx- retina TGTCATCTAG (3) 3.7 0.0037 P10.5 crx- retina AGTGGGTGGG (3) 1.9 0.0019 P10.5 crx- retina CACAACCAGG (4) 1.9 0.0019 P10.5 crx- retina GCTGTCTTAC (4) 1.9 0.0019 P10.5 crx- retina GGGGGAATTT (3) 1.9 0.0019 P10.5 crx+ retina GGGGGAATTT (3) 13.5 0.0135 P10.5 crx+ retina TGTCATCTAG (3) 9.6 0.0096 P10.5 crx+ retina CCTGATCTTT (2) 7.7 0.0077 P10.5 crx+ retina GAGCCACGGC (4) 3.8 0.0038 P10.5 crx+ retina CGGAGTACTT (2) 1.9 0.0019 Adult retinal TGTCATCTAG (3) 70.4 0.0704 Adult retinal CCTGATCTTT (2) 24.1 0.0241 Adult retinal GGATGGCAAT (2) 7.4 0.0074 Adult retinal ACCTCCCAGG (2) 1.9 0.0019 Adult retinal CCTTGATCTT (4) 1.9 0.0019 Adult retinal GCTGTCTTAC (4) 1.9 0.0019 Adult retinal GGATGGAATG (7) 1.9 0.0019 Adult retinal GGGGGAATTT (3) 1.9 0.0019 ONL CCTGATCTTT (2) 23 0.023 ONL TGTCATCTAG (3) 17.2 0.0172 ONL AAAAAGAAAA (19) 3.8 0.0038 ONL AGTGGGTGGG (3) 3.8 0.0038 ONL GGGGGAATTT (3) 3.8 0.0038 ONL CAACAACAAA (5) 1.9 0.0019 ONL GCTGTCTTAC (4) 1.9 0.0019