Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4263	Cst3	cystatin C	2	2 84.0 cM	13010
Gene Ontology	cysteine protease inhibitor activity | extracellular space
Human Homolog	CST3[cystatin C (amyloid angiopathy and cerebral hemorrhage)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 164 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CCTTGCTCAA (2) 70.1 0.0701 P8 Cb GC CAGACTTGTT (2) 4.9 0.0049 P8 Cb GC CAGATGGTTC (4) 1.6 0.0016 P8 Cb GC GCACAACCTG (2) 1.6 0.0016 P8 Cb GC GTTGGCTAGG 1.6 0.0016 P8 Cb GC TAGTTCGGCC 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CCTTGCTCAA (2) 171.1 0.1711 Cb medulloblastoma GTTGGCTAGG 6.9 0.0069 Cb medulloblastoma CAGATGGTTC (4) 2.3 0.0023 Cb medulloblastoma CCCTTGCTCA 2.3 0.0023 Cb medulloblastoma CCTTGGTCAA (2) 2.3 0.0023 Cb medulloblastoma GCCAGCCCGC 2.3 0.0023 Cb medulloblastoma TAGTTCGGCC 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CCTTGCTCAA (2) 58.2 0.0582 P8 GC+1d culture CAGATGGTTC (4) 3.4 0.0034 P8 GC+1d culture GTTGGCTAGG 2.3 0.0023 P8 GC+1d culture CAGACTGTTC (3) 1.1 0.0011 P8 GC+1d culture CCTTGCTCAG (3) 1.1 0.0011 P8 GC+1d culture CCTTGGTCAA (2) 1.1 0.0011 P8 GC+1d culture GAAAGGACAG (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CCTTGCTCAA (2) 79.6 0.0796 P8 GC+SHH+1d culture CAGATGGTTC (4) 5.9 0.0059 P8 GC+SHH+1d culture GGAAAAAGGA (12) 2.3 0.0023 P8 GC+SHH+1d culture GTTGGCTAGG 2.3 0.0023 P8 GC+SHH+1d culture ATCCTTCTAG 1.2 0.0012 P8 GC+SHH+1d culture CAGACTTGTT (2) 1.2 0.0012 P8 GC+SHH+1d culture CCTTGTTCAA 1.2 0.0012 P8 GC+SHH+1d culture TAGTTCGGCC 1.2 0.0012 3T3 fibroblasts CCTTGCTCAA (2) 119.2 0.1192 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTTGGCTAGG 7 0.007 3T3 fibroblasts ACCAGCCCCA (2) 3.5 0.0035 3T3 fibroblasts CAGACTTGTT (2) 3.5 0.0035 3T3 fibroblasts CCTTGCTCAG (3) 3.5 0.0035 3T3 fibroblasts TAGTTCGGCC 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CCTTGCTCAA (2) 24.7 0.0247 E15 cortex CAAACTGTTC 4.9 0.0049 E15 cortex CAGATGGTTC (4) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CCTTGCTCAA (2) 45.5 0.0455 P1 cortex CAGATGGTTC (4) 9.1 0.0091 P1 cortex ATCCTTCTAG 4.5 0.0045 P1 cortex CAGACTTGTT (2) 4.5 0.0045 P1 cortex CCTTTGCTTC (5) 4.5 0.0045 P1 cortex GTTGGCTAGG 4.5 0.0045 Hypothalamus CCTTGCTCAA (2) 273.5 0.2735 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TAGTTCGGCC 30.8 0.0308 Hypothalamus CAGACTGTTC (3) 25.4 0.0254 Hypothalamus ACCAGCCCCA (2) 7.2 0.0072 Hypothalamus CCTTTGCTTC (5) 5.4 0.0054 Hypothalamus ATCCTTCTAG 3.6 0.0036 Hypothalamus CAGACTTGTT (2) 3.6 0.0036 Hypothalamus CAGATGGTTC (4) 3.6 0.0036 Hypothalamus GTTGGCTAGG 3.6 0.0036 Hypothalamus CCTTGGTCAA (2) 1.8 0.0018 Hypothalamus CCTTGTTCAA 1.8 0.0018 Hypothalamus GAAAGGACAG (3) 1.8 0.0018 Hypothalamus GCCAGCCCGC 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CCTTGCTCAA (2) 41.3 0.0413 E12.5 retina CAGACTTGTT (2) 5.6 0.0056 E12.5 retina TATCCCCTAG 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina CCTTGCTCAA (2) 27.3 0.0273 E14.5 retina CAGACTGTTC (3) 3.6 0.0036 E14.5 retina ATCCTTCTAG 1.8 0.0018 E14.5 retina CAGACTTGTT (2) 1.8 0.0018 E14.5 retina CAGATGGTTC (4) 1.8 0.0018 E14.5 retina GGAAAAAGGA (12) 1.8 0.0018 E14.5 retina GTTGGCTAGG 1.8 0.0018 E14.5 retina TACCAAGTCC (2) 1.8 0.0018 E14.5 retina TAGTTCGGCC 1.8 0.0018 E16.5 retina CCTTGCTCAA (2) 63.4 0.0634 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TAGTTCGGCC 5.4 0.0054 E16.5 retina CAGATGGTTC (4) 3.6 0.0036 E16.5 retina AACCTTCTAT (4) 1.8 0.0018 E16.5 retina CAGACTGTTC (3) 1.8 0.0018 E16.5 retina TACCAAGTCC (2) 1.8 0.0018 E16.5 retina TATCCCCTAG 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CCTTGCTCAA (2) 43.7 0.0437 E18.5 retina CAGACTTGTT (2) 5.5 0.0055 E18.5 retina TAGTTCGGCC 5.5 0.0055 E18.5 retina CAGATGGTTC (4) 1.8 0.0018 E18.5 retina GAAAGGACAG (3) 1.8 0.0018 E18.5 retina TACCAAGTCC (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CCTTGCTCAA (2) 43.2 0.0432 P0.5 retina CAGACTGTTC (3) 2 0.002 P0.5 retina CAGACTTGTT (2) 2 0.002 P0.5 retina CAGATGGTTC (4) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CCTTGCTCAA (2) 98.5 0.0985 P2.5 retina CAGATGGTTC (4) 7 0.007 P2.5 retina ATCCTTCTAG 1.8 0.0018 P2.5 retina CAAACTGTTC 1.8 0.0018 P2.5 retina CAGACTTGTT (2) 1.8 0.0018 P2.5 retina CCTTGCTCAG (3) 1.8 0.0018 P2.5 retina GTTGGCTAGG 1.8 0.0018 P2.5 retina TAGTTCGGCC 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CCTTGCTCAA (2) 111 0.111 P4.5 retina CAGACTTGTT (2) 7.9 0.0079 P4.5 retina TAGTTCGGCC 5.9 0.0059 P4.5 retina CCTTGTTCAA 4 0.004 P4.5 retina ATCCTTCTAG 2 0.002 P4.5 retina CAAACTGTTC 2 0.002 P4.5 retina CCCTTGCTCA 2 0.002 P4.5 retina GAAAGGACAG (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CCTTGCTCAA (2) 173.4 0.1734 P6.5 retina CAGACTTGTT (2) 6.7 0.0067 P6.5 retina TAGTTCGGCC 5 0.005 P6.5 retina AACCTTCTAT (4) 1.7 0.0017 P6.5 retina CAGATGGTTC (4) 1.7 0.0017 P6.5 retina CCTTTGCTCA (2) 1.7 0.0017 P6.5 retina GTTGGCTAGG 1.7 0.0017 P6.5 retina TATCCCCTAG 1.7 0.0017 P10.5 crx- retina CCTTGCTCAA (2) 130 0.13 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CAGATGGTTC (4) 11.1 0.0111 P10.5 crx- retina CAGACTTGTT (2) 9.3 0.0093 P10.5 crx- retina GCCAGCCCGC 9.3 0.0093 P10.5 crx- retina TAGTTCGGCC 9.3 0.0093 P10.5 crx- retina ACCAGCCCCA (2) 3.7 0.0037 P10.5 crx- retina GCACAACCTG (2) 3.7 0.0037 P10.5 crx- retina GTTGGCTAGG 3.7 0.0037 P10.5 crx+ retina CCTTGCTCAA (2) 203.8 0.2038 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CAGATGGTTC (4) 9.6 0.0096 P10.5 crx+ retina TAGTTCGGCC 9.6 0.0096 P10.5 crx+ retina CAGACTTGTT (2) 3.8 0.0038 P10.5 crx+ retina GTTGGCTAGG 3.8 0.0038 P10.5 crx+ retina AACCTTCTAT (4) 1.9 0.0019 P10.5 crx+ retina ACCAGCCCCA (2) 1.9 0.0019 P10.5 crx+ retina CAAACTGTTC 1.9 0.0019 P10.5 crx+ retina CCCTTGCTCA 1.9 0.0019 P10.5 crx+ retina GCACAACCTG (2) 1.9 0.0019 Adult retinal CCTTGCTCAA (2) 181.5 0.1815 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CAGATGGTTC (4) 7.4 0.0074 Adult retinal TAGTTCGGCC 5.6 0.0056 Adult retinal ACCAGCCCCA (2) 1.9 0.0019 Adult retinal CAAACTGTTC 1.9 0.0019 Adult retinal CAGACTTGTT (2) 1.9 0.0019 Adult retinal CCTTTGCTCA (2) 1.9 0.0019 Adult retinal GTTGGCTAGG 1.9 0.0019 ONL CCTTGCTCAA (2) 143.7 0.1437 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CAGACTGTTC (3) 7.7 0.0077 ONL AACCTTCTAT (4) 3.8 0.0038 ONL ATCCTTCTAG 3.8 0.0038 ONL CCTTGGTCAA (2) 3.8 0.0038 ONL CCTTTGCTCA (2) 1.9 0.0019 ONL GCACAACCTG (2) 1.9 0.0019 ONL GCCAGCCCGC 1.9 0.0019 ONL GTTGGCTAGG 1.9 0.0019