Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.43331	Sfrs5	splicing factor, arginine/serine-rich 5 (SRp40, HRS)	12		20384
Gene Ontology	mRNA splice site selection | nuclear mRNA splicing, via spliceosome | nucleus | regulation of transcription, DNA-dependent | RNA binding | spliceosome complex
Human Homolog	SFRS5[splicing factor, arginine/serine-rich 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 139 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGGTTGTTT (5) 8.2 0.0082 P8 Cb GC AGACAAGCTG (2) 6.5 0.0065 P8 Cb GC GTTTTTTAAA (10) 6.5 0.0065 P8 Cb GC TGGAAAAAAA (27) 3.3 0.0033 P8 Cb GC TTTTTAAAAT (7) 3.3 0.0033 P8 Cb GC AAGGTTTCTC (2) 1.6 0.0016 P8 Cb GC CCCAGGCTCA (3) 1.6 0.0016 Cb medulloblastoma TGGAAAAAAA (27) 25.4 0.0254 Cb medulloblastoma TTTGTACTTT (3) 16.2 0.0162 Cb medulloblastoma GTTTTTTAAA (10) 9.2 0.0092 Cb medulloblastoma CCCGGGCTCG (2) 4.6 0.0046 Cb medulloblastoma TGGGTTGTTT (5) 4.6 0.0046 Cb medulloblastoma AGACAAGCTG (2) 2.3 0.0023 Cb medulloblastoma CCTTTGGTCT (2) 2.3 0.0023 Cb medulloblastoma TTTTTTAAAA (15) 2.3 0.0023 P8 GC+1d culture AGACAAGCTG (2) 12.6 0.0126 P8 GC+1d culture GTTTTTTAAA (10) 11.4 0.0114 P8 GC+1d culture TTTGTACTTT (3) 5.7 0.0057 P8 GC+1d culture AAGGTTTCTC (2) 4.6 0.0046 P8 GC+1d culture CCCAGGCTCA (3) 2.3 0.0023 P8 GC+1d culture CCCGGGCTCG (2) 2.3 0.0023 P8 GC+1d culture TGGAAAAAAA (27) 2.3 0.0023 P8 GC+1d culture TGGGTTGTTT (5) 1.1 0.0011 P8 GC+1d culture TTTTTAAAAT (7) 1.1 0.0011 P8 GC+SHH+1d culture GTTTTTTAAA (10) 14.1 0.0141 P8 GC+SHH+1d culture TGGAAAAAAA (27) 11.7 0.0117 P8 GC+SHH+1d culture TTTGTACTTT (3) 8.2 0.0082 P8 GC+SHH+1d culture AGACAAGCTG (2) 4.7 0.0047 P8 GC+SHH+1d culture TTTTTAAAAT (7) 3.5 0.0035 P8 GC+SHH+1d culture TTTTTTAAAA (15) 3.5 0.0035 P8 GC+SHH+1d culture TGGGTTGTTT (5) 2.3 0.0023 P8 GC+SHH+1d culture CCCAGGCTCA (3) 1.2 0.0012 P8 GC+SHH+1d culture CCTTTGGTCT (2) 1.2 0.0012 3T3 fibroblasts CCCAGGCTCA (3) 31.5 0.0315 3T3 fibroblasts AGACAAGCTG (2) 28 0.028 3T3 fibroblasts CCTTTGGTCT (2) 3.5 0.0035 E15 cortex AGACAAGCTG (2) 4.9 0.0049 E15 cortex CCCAGGCTCA (3) 4.9 0.0049 E15 cortex GTTTTTTAAA (10) 4.9 0.0049 E15 cortex TGGAAAAAAA (27) 4.9 0.0049 P1 cortex AGACAAGCTG (2) 18.2 0.0182 P1 cortex CCCAGGCTCA (3) 4.5 0.0045 P1 cortex GTTTTTTAAA (10) 4.5 0.0045 Hypothalamus TGGGTTGTTT (5) 19.9 0.0199 Hypothalamus AGACAAGCTG (2) 12.7 0.0127 Hypothalamus TTTGTACTTT (3) 5.4 0.0054 Hypothalamus AAGGTTTCTC (2) 3.6 0.0036 Hypothalamus AGTGGCTGTC 1.8 0.0018 Hypothalamus CCCAGGCTCA (3) 1.8 0.0018 Hypothalamus GTTTTTTAAA (10) 1.8 0.0018 Hypothalamus TGGAAAAAAA (27) 1.8 0.0018 E12.5 retina AGACAAGCTG (2) 16.9 0.0169 E12.5 retina GTTTTTTAAA (10) 11.3 0.0113 E12.5 retina TGGGTTGTTT (5) 11.3 0.0113 E12.5 retina TGGAAAAAAA (27) 5.6 0.0056 E12.5 retina TTTTTAAAAT (7) 3.8 0.0038 E12.5 retina AAGGTTTCTC (2) 1.9 0.0019 E12.5 retina TTTGTACTTT (3) 1.9 0.0019 E14.5 retina TGGGTTGTTT (5) 16.4 0.0164 E14.5 retina TGGAAAAAAA (27) 10.9 0.0109 E14.5 retina GTTTTTTAAA (10) 9.1 0.0091 E14.5 retina AAGGTTTCTC (2) 1.8 0.0018 E14.5 retina AGACAAGCTG (2) 1.8 0.0018 E14.5 retina TTTGTACTTT (3) 1.8 0.0018 E16.5 retina TGGGTTGTTT (5) 7.2 0.0072 E16.5 retina GTTTTTTAAA (10) 5.4 0.0054 E16.5 retina TTTTTAAAAT (7) 5.4 0.0054 E16.5 retina TGGAAAAAAA (27) 3.6 0.0036 E16.5 retina CCCAGGCTCA (3) 1.8 0.0018 E16.5 retina CCCGGGCTCG (2) 1.8 0.0018 E18.5 retina TGGGTTGTTT (5) 58.2 0.0582 E18.5 retina TGGAAAAAAA (27) 18.2 0.0182 E18.5 retina AGACAAGCTG (2) 9.1 0.0091 E18.5 retina GTTTTTTAAA (10) 9.1 0.0091 E18.5 retina TTTTTTAAAA (15) 5.5 0.0055 E18.5 retina AAGGTTTCTC (2) 1.8 0.0018 E18.5 retina AGTGGCTGTC 1.8 0.0018 E18.5 retina CCCAGGCTCA (3) 1.8 0.0018 E18.5 retina TTTGTACTTT (3) 1.8 0.0018 E18.5 retina TTTTTAAAAT (7) 1.8 0.0018 P0.5 retina AGACAAGCTG (2) 43.2 0.0432 P0.5 retina TGGGTTGTTT (5) 13.7 0.0137 P0.5 retina TGGAAAAAAA (27) 11.8 0.0118 P0.5 retina GTTTTTTAAA (10) 5.9 0.0059 P0.5 retina CCCAGGCTCA (3) 3.9 0.0039 P0.5 retina TTTTTAAAAT (7) 3.9 0.0039 P0.5 retina AAGGTTTCTC (2) 2 0.002 P2.5 retina TGGGTTGTTT (5) 21.1 0.0211 P2.5 retina GTTTTTTAAA (10) 15.8 0.0158 P2.5 retina TGGAAAAAAA (27) 10.6 0.0106 P2.5 retina AAGGTTTCTC (2) 8.8 0.0088 P2.5 retina AGACAAGCTG (2) 8.8 0.0088 P2.5 retina CCCAGGCTCA (3) 3.5 0.0035 P2.5 retina ATGCCCGGCT 1.8 0.0018 P2.5 retina TTTTTAAAAT (7) 1.8 0.0018 P2.5 retina TTTTTTAAAA (15) 1.8 0.0018 P4.5 retina GTTTTTTAAA (10) 17.8 0.0178 P4.5 retina AGACAAGCTG (2) 7.9 0.0079 P4.5 retina TTTTTAAAAT (7) 7.9 0.0079 P4.5 retina TGGGTTGTTT (5) 5.9 0.0059 P4.5 retina AAGGTTTCTC (2) 4 0.004 P4.5 retina CCCAGGCTCA (3) 2 0.002 P4.5 retina CCCGGGCTCG (2) 2 0.002 P4.5 retina TGGAAAAAAA (27) 2 0.002 P6.5 retina AGACAAGCTG (2) 15 0.015 P6.5 retina GTTTTTTAAA (10) 6.7 0.0067 P6.5 retina TGGGTTGTTT (5) 6.7 0.0067 P6.5 retina TGGAAAAAAA (27) 5 0.005 P6.5 retina TTTTTAAAAT (7) 5 0.005 P6.5 retina CCCAGGCTCA (3) 3.3 0.0033 P6.5 retina TTTGTACTTT (3) 3.3 0.0033 P6.5 retina AGTGGCTGTC 1.7 0.0017 P6.5 retina ATGCCCGGCT 1.7 0.0017 P10.5 crx- retina AGACAAGCTG (2) 9.3 0.0093 P10.5 crx- retina TGGGTTGTTT (5) 5.6 0.0056 P10.5 crx- retina GTTTTTTAAA (10) 3.7 0.0037 P10.5 crx- retina TGGAAAAAAA (27) 3.7 0.0037 P10.5 crx- retina TTTGTACTTT (3) 1.9 0.0019 P10.5 crx- retina TTTTTAAAAT (7) 1.9 0.0019 P10.5 crx+ retina AGACAAGCTG (2) 13.5 0.0135 P10.5 crx+ retina GTTTTTTAAA (10) 9.6 0.0096 P10.5 crx+ retina TGGAAAAAAA (27) 5.8 0.0058 P10.5 crx+ retina TGGGTTGTTT (5) 5.8 0.0058 P10.5 crx+ retina TTTTTAAAAT (7) 3.8 0.0038 P10.5 crx+ retina ATGCCCGGCT 1.9 0.0019 P10.5 crx+ retina CCCAGGCTCA (3) 1.9 0.0019 Adult retinal AGACAAGCTG (2) 25.9 0.0259 Adult retinal GTTTTTTAAA (10) 3.7 0.0037 Adult retinal TGGAAAAAAA (27) 3.7 0.0037 Adult retinal AAGGTTTCTC (2) 1.9 0.0019 Adult retinal AGTGGCTGTC 1.9 0.0019 Adult retinal CCCAGGCTCA (3) 1.9 0.0019 Adult retinal TGGGTTGTTT (5) 1.9 0.0019 ONL GTTTTTTAAA (10) 9.6 0.0096 ONL TTTTTAAAAT (7) 5.7 0.0057 ONL AAGGTTTCTC (2) 1.9 0.0019 ONL AGACAAGCTG (2) 1.9 0.0019 ONL CCCAGGCTCA (3) 1.9 0.0019 ONL TGGGTTGTTT (5) 1.9 0.0019