Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.49884	Ube2d3	ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	3		66105
Gene Ontology	ligase activity | ubiquitin conjugating enzyme activity | ubiquitin cycle | ubiquitin-dependent protein catabolism | ubiquitin-protein ligase activity
Human Homolog	UBE2D3[ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 183 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TCAATAAAGG 9.8 0.0098 P8 Cb GC TGAATGAATG (3) 6.5 0.0065 P8 Cb GC AATGAATAAA (3) 4.9 0.0049 P8 Cb GC TGATGCTACC (2) 4.9 0.0049 P8 Cb GC ATTCTGGCAG (2) 3.3 0.0033 P8 Cb GC TTTTGTGTTC (3) 3.3 0.0033 P8 Cb GC AATAAAATTA (4) 1.6 0.0016 P8 Cb GC GGATGAAAAA (9) 1.6 0.0016 P8 Cb GC TATGAGACCT (4) 1.6 0.0016 P8 Cb GC TCTTTAGAGT 1.6 0.0016 P8 Cb GC TTAAGTCACC (2) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma TTTTGTGTTC (3) 6.9 0.0069 Cb medulloblastoma AATGAATAAA (3) 4.6 0.0046 Cb medulloblastoma ATTCTGGCAG (2) 4.6 0.0046 Cb medulloblastoma TCAATAAAGG 4.6 0.0046 Cb medulloblastoma TGAATGAATG (3) 4.6 0.0046 Cb medulloblastoma AATAAAATTA (4) 2.3 0.0023 Cb medulloblastoma ATCAGTGTCT (2) 2.3 0.0023 Cb medulloblastoma CCTTCTGAAG (5) 2.3 0.0023 Cb medulloblastoma TAACCTCAAA (3) 2.3 0.0023 Cb medulloblastoma TTAAGTCACC (2) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TCAATAAAGG 10.3 0.0103 P8 GC+1d culture AATAAAATTA (4) 4.6 0.0046 P8 GC+1d culture TATGAGACCT (4) 3.4 0.0034 P8 GC+1d culture TGAATGAATG (3) 3.4 0.0034 P8 GC+1d culture ATTCTGGCAG (2) 2.3 0.0023 P8 GC+1d culture CCTTCTGAAG (5) 2.3 0.0023 P8 GC+1d culture AATGAATAAA (3) 1.1 0.0011 P8 GC+1d culture ATCAGTGTCT (2) 1.1 0.0011 P8 GC+1d culture CTCATCTGAG (6) 1.1 0.0011 P8 GC+1d culture GGATGAAAAA (9) 1.1 0.0011 P8 GC+1d culture TGATGTTCAC 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TCAATAAAGG 4.7 0.0047 P8 GC+SHH+1d culture TGAATGAATG (3) 4.7 0.0047 P8 GC+SHH+1d culture AATGAATAAA (3) 3.5 0.0035 P8 GC+SHH+1d culture CATAAAATAC (4) 3.5 0.0035 P8 GC+SHH+1d culture TGATGCTACC (2) 3.5 0.0035 P8 GC+SHH+1d culture AATAAAATTA (4) 2.3 0.0023 P8 GC+SHH+1d culture GCATACTTCT (3) 1.2 0.0012 P8 GC+SHH+1d culture TATGAGACCT (4) 1.2 0.0012 P8 GC+SHH+1d culture TTAAGTCACC (2) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts ATTCTGGCAG (2) 7 0.007 3T3 fibroblasts AGGCTGTGTT 3.5 0.0035 3T3 fibroblasts TAACCTCAAA (3) 3.5 0.0035 3T3 fibroblasts TGATGCTACC (2) 3.5 0.0035 3T3 fibroblasts TTAAGTCACC (2) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex ATTCTGGCAG (2) 4.9 0.0049 E15 cortex CTGGAAAAAA (10) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex TTTTGTGTTC (3) 9.1 0.0091 P1 cortex AATAAAATTA (4) 4.5 0.0045 P1 cortex TTAAGTCACC (2) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus AATGAATAAA (3) 9.1 0.0091 Hypothalamus TCAATAAAGG 7.2 0.0072 Hypothalamus TTAAGTCACC (2) 5.4 0.0054 Hypothalamus TCTTTAGAGT 3.6 0.0036 Hypothalamus AATAAAATTA (4) 1.8 0.0018 Hypothalamus AGAGACAGGG (9) 1.8 0.0018 Hypothalamus ATTCTGGCAG (2) 1.8 0.0018 Hypothalamus GCATACTTCT (3) 1.8 0.0018 Hypothalamus TGAATGAATG (3) 1.8 0.0018 Hypothalamus TGATGCTACC (2) 1.8 0.0018 Hypothalamus TTTTGTGTTC (3) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina TGAATGAATG (3) 22.5 0.0225 E12.5 retina TGATGCTACC (2) 7.5 0.0075 E12.5 retina AATGAATAAA (3) 5.6 0.0056 E12.5 retina AATAAAATTA (4) 3.8 0.0038 E12.5 retina CATAAAATAC (4) 3.8 0.0038 E12.5 retina CTGGAAAAAA (10) 1.9 0.0019 E12.5 retina TCAATAAAGG 1.9 0.0019 E12.5 retina TTTTGTGTTC (3) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina AATGAATAAA (3) 12.8 0.0128 E14.5 retina TCAATAAAGG 12.8 0.0128 E14.5 retina TATGAGACCT (4) 3.6 0.0036 E14.5 retina AATAAAATTA (4) 1.8 0.0018 E14.5 retina ATCAGTGTCT (2) 1.8 0.0018 E14.5 retina TTAAGTCACC (2) 1.8 0.0018 E14.5 retina TTTTGTGTTC (3) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TCAATAAAGG 10.9 0.0109 E16.5 retina TGAATGAATG (3) 9.1 0.0091 E16.5 retina AATGAATAAA (3) 5.4 0.0054 E16.5 retina AGGCTGTGTT 3.6 0.0036 E16.5 retina GCATACTTCT (3) 3.6 0.0036 E16.5 retina AATAAAATTA (4) 1.8 0.0018 E16.5 retina ATTCTGGCAG (2) 1.8 0.0018 E16.5 retina CATAAAATAC (4) 1.8 0.0018 E16.5 retina CTCATCTGAG (6) 1.8 0.0018 E16.5 retina TGATGCTACC (2) 1.8 0.0018 E16.5 retina TGATGTTCAC 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina AATGAATAAA (3) 9.1 0.0091 E18.5 retina AATAAAATTA (4) 5.5 0.0055 E18.5 retina TGAATGAATG (3) 5.5 0.0055 E18.5 retina ATTCTGGCAG (2) 1.8 0.0018 E18.5 retina CCTTCTGAAG (5) 1.8 0.0018 E18.5 retina CTGGAAAAAA (10) 1.8 0.0018 E18.5 retina GGATGAAAAA (9) 1.8 0.0018 E18.5 retina TCAATAAAGG 1.8 0.0018 E18.5 retina TGATGCTACC (2) 1.8 0.0018 E18.5 retina TTAAGTCACC (2) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TCAATAAAGG 7.9 0.0079 P0.5 retina TGAATGAATG (3) 3.9 0.0039 P0.5 retina TGATGCTACC (2) 3.9 0.0039 P0.5 retina ATTCTGGCAG (2) 2 0.002 P0.5 retina CTGGAAAAAA (10) 2 0.002 P0.5 retina TATGAGACCT (4) 2 0.002 P0.5 retina TTTTGTGTTC (3) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TCAATAAAGG 14.1 0.0141 P2.5 retina TGAATGAATG (3) 8.8 0.0088 P2.5 retina AATGAATAAA (3) 5.3 0.0053 P2.5 retina TGATGCTACC (2) 5.3 0.0053 P2.5 retina AATAAAATTA (4) 3.5 0.0035 P2.5 retina ATTCTGGCAG (2) 1.8 0.0018 P2.5 retina GCATACTTCT (3) 1.8 0.0018 P2.5 retina TGATGTTCAC 1.8 0.0018 P2.5 retina TTAAGTCACC (2) 1.8 0.0018 P2.5 retina TTTTGTGTTC (3) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina AATAAAATTA (4) 5.9 0.0059 P4.5 retina AATGAATAAA (3) 4 0.004 P4.5 retina TCAATAAAGG 4 0.004 P4.5 retina CTCATCTGAG (6) 2 0.002 P4.5 retina CTGGAAAAAA (10) 2 0.002 P4.5 retina TGAATGAATG (3) 2 0.002 P4.5 retina TGATGCTACC (2) 2 0.002 P4.5 retina TGGTTAATTT (3) 2 0.002 P4.5 retina TTAAGTCACC (2) 2 0.002 P4.5 retina TTTTGTGTTC (3) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TCAATAAAGG 13.3 0.0133 P6.5 retina AATAAAATTA (4) 11.7 0.0117 P6.5 retina TGAATGAATG (3) 10 0.01 P6.5 retina AATGAATAAA (3) 8.3 0.0083 P6.5 retina TGATGCTACC (2) 8.3 0.0083 P6.5 retina TAACCTCAAA (3) 1.7 0.0017 P6.5 retina TATGAGACCT (4) 1.7 0.0017 P6.5 retina TTTTGTGTTC (3) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina ATTCTGGCAG (2) 5.6 0.0056 P10.5 crx- retina TCAATAAAGG 3.7 0.0037 P10.5 crx- retina TGAATGAATG (3) 3.7 0.0037 P10.5 crx- retina AGAGACAGGG (9) 1.9 0.0019 P10.5 crx- retina GCATACTTCT (3) 1.9 0.0019 P10.5 crx- retina TATGAGACCT (4) 1.9 0.0019 P10.5 crx- retina TCTTTAGAGT 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina TGAATGAATG (3) 7.7 0.0077 P10.5 crx+ retina TCAATAAAGG 5.8 0.0058 P10.5 crx+ retina AATGAATAAA (3) 3.8 0.0038 P10.5 crx+ retina TGATGCTACC (2) 3.8 0.0038 P10.5 crx+ retina TGGTTAATTT (3) 3.8 0.0038 P10.5 crx+ retina ATCAGTGTCT (2) 1.9 0.0019 P10.5 crx+ retina CCTTCTGAAG (5) 1.9 0.0019 P10.5 crx+ retina TTTTGTGTTC (3) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal TTTTGTGTTC (3) 7.4 0.0074 Adult retinal TCAATAAAGG 3.7 0.0037 Adult retinal TGAATGAATG (3) 3.7 0.0037 Adult retinal AATAAAATTA (4) 1.9 0.0019 Adult retinal AGAGACAGGG (9) 1.9 0.0019 Adult retinal ATCAGTGTCT (2) 1.9 0.0019 Adult retinal ATTCTGGCAG (2) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TGATGCTACC (2) 5.7 0.0057 ONL TGAATGAATG (3) 3.8 0.0038 ONL AATGAATAAA (3) 1.9 0.0019 ONL ATCAGTGTCT (2) 1.9 0.0019 ONL CATAAAATAC (4) 1.9 0.0019 ONL CTCATCTGAG (6) 1.9 0.0019 ONL CTGGAAAAAA (10) 1.9 0.0019 ONL GGATGAAAAA (9) 1.9 0.0019