Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.5246	Ppia	peptidylprolyl isomerase A	11	11 1.0 cM	268373
Gene Ontology	cytosol | isomerase activity | peptidyl-prolyl cis-trans isomerase activity | protein folding
Human Homolog	PPIA[peptidylprolyl isomerase A (cyclophilin A)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 249 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGCGTTTTG (2) 124 0.124 P8 Cb GC AATAAAAACT (2) 26.1 0.0261 P8 Cb GC CAAGACTGAA (9) 9.8 0.0098 P8 Cb GC TGGTCTTTGG (6) 8.2 0.0082 P8 Cb GC TGCCAGGGTG (4) 6.5 0.0065 P8 Cb GC GCAAATGCTG (4) 4.9 0.0049 P8 Cb GC AAAAAAAAAG (19) 3.3 0.0033 P8 Cb GC CTTGCCATCC (3) 3.3 0.0033 P8 Cb GC GAGCGCTTTG 3.3 0.0033 P8 Cb GC TAGCGTTTTG 3.3 0.0033 P8 Cb GC TGGAGTTGGA (6) 3.3 0.0033 P8 Cb GC AGCGTTTTGG 1.6 0.0016 P8 Cb GC GAACATTTTG (4) 1.6 0.0016 P8 Cb GC GCTGCAGCAA (4) 1.6 0.0016 P8 Cb GC GTCAACCCCA (5) 1.6 0.0016 P8 Cb GC TCTGTAATCT (8) 1.6 0.0016 P8 Cb GC TGGTCTCTGG (3) 1.6 0.0016 Cb medulloblastoma GAGCGTTTTG (2) 85.6 0.0856 Cb medulloblastoma AATAAAAACT (2) 32.4 0.0324 Cb medulloblastoma AAAAAAAAAG (19) 13.9 0.0139 Cb medulloblastoma GCAAATGCTG (4) 11.6 0.0116 Cb medulloblastoma TGGAGTTGGA (6) 6.9 0.0069 Cb medulloblastoma CCTTCTTTCA (2) 4.6 0.0046 Cb medulloblastoma GTTTCGAAAA (3) 4.6 0.0046 Cb medulloblastoma AACATTGTGG (4) 2.3 0.0023 Cb medulloblastoma GACAAGATGC (4) 2.3 0.0023 Cb medulloblastoma GAGCGTCTTG (2) 2.3 0.0023 Cb medulloblastoma TCTGTAATCT (8) 2.3 0.0023 P8 GC+1d culture GAGCGTTTTG (2) 143.8 0.1438 P8 GC+1d culture AATAAAAACT (2) 22.8 0.0228 P8 GC+1d culture TGGAGTTGGA (6) 9.1 0.0091 P8 GC+1d culture TCCTGTAATC 3.4 0.0034 P8 GC+1d culture ACAAAAACCA (6) 2.3 0.0023 P8 GC+1d culture CAAGACTGAA (9) 2.3 0.0023 P8 GC+1d culture GACAAGATGC (4) 2.3 0.0023 P8 GC+1d culture GAGCATTTTG (5) 2.3 0.0023 P8 GC+1d culture GCTGCAGCAA (4) 2.3 0.0023 P8 GC+1d culture TGCCAGGGTG (4) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAG (19) 1.1 0.0011 P8 GC+1d culture CTTGCCATCC (3) 1.1 0.0011 P8 GC+1d culture GAACATTTTG (4) 1.1 0.0011 P8 GC+1d culture GAGCGCTTTG 1.1 0.0011 P8 GC+1d culture GAGCGTCTTG (2) 1.1 0.0011 P8 GC+1d culture GCAAATGCTG (4) 1.1 0.0011 P8 GC+1d culture GGACACTTAA (4) 1.1 0.0011 P8 GC+1d culture TCTGTAATCT (8) 1.1 0.0011 P8 GC+SHH+1d culture GAGCGTTTTG (2) 130 0.13 P8 GC+SHH+1d culture AATAAAAACT (2) 34 0.034 P8 GC+SHH+1d culture GCTGCAGCAA (4) 11.7 0.0117 P8 GC+SHH+1d culture AAAAAAAAAG (19) 5.9 0.0059 P8 GC+SHH+1d culture GAACATTTTG (4) 2.3 0.0023 P8 GC+SHH+1d culture GAGCGCTTTG 2.3 0.0023 P8 GC+SHH+1d culture TGCCAGGGTG (4) 2.3 0.0023 P8 GC+SHH+1d culture AATCCTGGAA 1.2 0.0012 P8 GC+SHH+1d culture CCTTCTTTCA (2) 1.2 0.0012 P8 GC+SHH+1d culture CTATTAAAAT (2) 1.2 0.0012 P8 GC+SHH+1d culture CTTGCCATCC (3) 1.2 0.0012 P8 GC+SHH+1d culture GAGCGTCTTG (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGCGTTCTG 1.2 0.0012 P8 GC+SHH+1d culture GCAAATGCTG (4) 1.2 0.0012 P8 GC+SHH+1d culture GGACACTTAA (4) 1.2 0.0012 P8 GC+SHH+1d culture TGGAGTTGGA (6) 1.2 0.0012 P8 GC+SHH+1d culture TGGTCTCTGG (3) 1.2 0.0012 P8 GC+SHH+1d culture TGGTCTTTGG (6) 1.2 0.0012 3T3 fibroblasts GAGCGTTTTG (2) 399.6 0.3996 3T3 fibroblasts CCCCCACCAC (4) 7 0.007 3T3 fibroblasts GAGCGTTTGG 7 0.007 3T3 fibroblasts GACAAGATGC (4) 3.5 0.0035 E15 cortex GAGCGTTTTG (2) 222.7 0.2227 E15 cortex AATAAAAACT (2) 9.9 0.0099 E15 cortex TAGCGTTTTG 9.9 0.0099 E15 cortex AACATTGTGG (4) 4.9 0.0049 E15 cortex CCCCCACCAC (4) 4.9 0.0049 E15 cortex GAACATTTTG (4) 4.9 0.0049 E15 cortex GAGCCGTTTT 4.9 0.0049 E15 cortex TGGAGTTGGA (6) 4.9 0.0049 E15 cortex TGGTCTCTGG (3) 4.9 0.0049 P1 cortex GAGCGTTTTG (2) 159.1 0.1591 P1 cortex AATAAAAACT (2) 13.6 0.0136 P1 cortex AAAAAAAAAG (19) 9.1 0.0091 P1 cortex GAGCGTCTTG (2) 4.5 0.0045 P1 cortex GAGCGTTCTG 4.5 0.0045 P1 cortex GAGTGTTTTG (3) 4.5 0.0045 P1 cortex GCTGCAGCAA (4) 4.5 0.0045 Hypothalamus GAGCGTTTTG (2) 77.9 0.0779 Hypothalamus AATAAAAACT (2) 21.7 0.0217 Hypothalamus TGCCAGGGTG (4) 9.1 0.0091 Hypothalamus GACAAGATGC (4) 7.2 0.0072 Hypothalamus GCAAATGCTG (4) 7.2 0.0072 Hypothalamus AAAAAAAAAG (19) 5.4 0.0054 Hypothalamus GCTGCAGCAA (4) 3.6 0.0036 Hypothalamus TGGTCTTTGG (6) 3.6 0.0036 Hypothalamus CAAGACTGAA (9) 1.8 0.0018 Hypothalamus CTATTAAAAT (2) 1.8 0.0018 Hypothalamus GAACATTTTG (4) 1.8 0.0018 Hypothalamus GTCAACCCCA (5) 1.8 0.0018 E12.5 retina GAGCGTTTTG (2) 114.5 0.1145 E12.5 retina GCTGCAGCAA (4) 11.3 0.0113 E12.5 retina AATAAAAACT (2) 9.4 0.0094 E12.5 retina CAAGACTGAA (9) 5.6 0.0056 E12.5 retina GTCAACCCCA (5) 3.8 0.0038 E12.5 retina CCTTCTTTCA (2) 1.9 0.0019 E12.5 retina CTTGCCATCC (3) 1.9 0.0019 E12.5 retina GAGCGCTTTG 1.9 0.0019 E12.5 retina GGTCCTTATC (3) 1.9 0.0019 E12.5 retina TGGAGTTGGA (6) 1.9 0.0019 E14.5 retina GAGCGTTTTG (2) 87.5 0.0875 E14.5 retina AATAAAAACT (2) 25.5 0.0255 E14.5 retina TGGAGTTGGA (6) 5.5 0.0055 E14.5 retina GACAAGATGC (4) 3.6 0.0036 E14.5 retina AATCCTGGAA 1.8 0.0018 E14.5 retina ACAAAAACCA (6) 1.8 0.0018 E14.5 retina CCTTCTTTCA (2) 1.8 0.0018 E14.5 retina CTTGCCATCC (3) 1.8 0.0018 E14.5 retina GTCAACCCCA (5) 1.8 0.0018 E14.5 retina TCTCTAGTGA (3) 1.8 0.0018 E14.5 retina TCTGTAATCT (8) 1.8 0.0018 E16.5 retina GAGCGTTTTG (2) 179.3 0.1793 E16.5 retina AATAAAAACT (2) 25.4 0.0254 E16.5 retina TGCCAGGGTG (4) 25.4 0.0254 E16.5 retina GCAAATGCTG (4) 9.1 0.0091 E16.5 retina GACAAGATGC (4) 7.2 0.0072 E16.5 retina AATCCTGGAA 5.4 0.0054 E16.5 retina CTATTAAAAT (2) 3.6 0.0036 E16.5 retina GGACACTTAA (4) 3.6 0.0036 E16.5 retina GTCAACCCCA (5) 3.6 0.0036 E16.5 retina AACATTGTGG (4) 1.8 0.0018 E16.5 retina CCTTCTTTCA (2) 1.8 0.0018 E16.5 retina CTTGCCATCC (3) 1.8 0.0018 E16.5 retina GAACATTTTG (4) 1.8 0.0018 E16.5 retina GAGCCGTTTT 1.8 0.0018 E16.5 retina GAGCGTTTGG 1.8 0.0018 E16.5 retina GGTCCTTATC (3) 1.8 0.0018 E16.5 retina TCTGTAATCT (8) 1.8 0.0018 E16.5 retina TGGAGTTGGA (6) 1.8 0.0018 E18.5 retina GAGCGTTTTG (2) 63.7 0.0637 E18.5 retina AATAAAAACT (2) 36.4 0.0364 E18.5 retina AAAAAAAAAG (19) 5.5 0.0055 E18.5 retina AATCCTGGAA 5.5 0.0055 E18.5 retina CTTGCCATCC (3) 5.5 0.0055 E18.5 retina GCTGCAGCAA (4) 5.5 0.0055 E18.5 retina TGGAGTTGGA (6) 5.5 0.0055 E18.5 retina TGGTCTTTGG (6) 5.5 0.0055 E18.5 retina GAACATTTTG (4) 3.6 0.0036 E18.5 retina GCAAATGCTG (4) 3.6 0.0036 E18.5 retina GAGCGTTTGG 1.8 0.0018 P0.5 retina GAGCGTTTTG (2) 296.3 0.2963 P0.5 retina AATAAAAACT (2) 11.8 0.0118 P0.5 retina GCTGCAGCAA (4) 11.8 0.0118 P0.5 retina GCAAATGCTG (4) 5.9 0.0059 P0.5 retina CTTGCCATCC (3) 3.9 0.0039 P0.5 retina GAACATTTTG (4) 3.9 0.0039 P0.5 retina GAGCCGTTTT 3.9 0.0039 P0.5 retina GAGCGTTCTG 3.9 0.0039 P0.5 retina GAGCGTTTGG 3.9 0.0039 P0.5 retina TGGAGTTGGA (6) 3.9 0.0039 P0.5 retina TGGTCTTTGG (6) 3.9 0.0039 P0.5 retina CAAGACTGAA (9) 2 0.002 P0.5 retina CCTTCTTTCA (2) 2 0.002 P0.5 retina GAGCGTCTTG (2) 2 0.002 P0.5 retina GAGCGTTTTT 2 0.002 P0.5 retina GAGTGTTTTG (3) 2 0.002 P0.5 retina TGCCAGGGTG (4) 2 0.002 P2.5 retina GAGCGTTTTG (2) 128.5 0.1285 P2.5 retina AATAAAAACT (2) 26.4 0.0264 P2.5 retina GCTGCAGCAA (4) 12.3 0.0123 P2.5 retina GAGCCGTTTT 5.3 0.0053 P2.5 retina AAAAAAAAAG (19) 3.5 0.0035 P2.5 retina CAAGACTGAA (9) 3.5 0.0035 P2.5 retina CTATTAAAAT (2) 3.5 0.0035 P2.5 retina TAGCGTTTTG 3.5 0.0035 P2.5 retina AATCCTGGAA 1.8 0.0018 P2.5 retina CCTTCTTTCA (2) 1.8 0.0018 P2.5 retina CTTGCCATCC (3) 1.8 0.0018 P2.5 retina GAACATTTTG (4) 1.8 0.0018 P2.5 retina GACAAGATGC (4) 1.8 0.0018 P2.5 retina GAGCGCTTTG 1.8 0.0018 P2.5 retina GAGCGTCTTG (2) 1.8 0.0018 P2.5 retina GAGCGTTTGG 1.8 0.0018 P2.5 retina GGTCCTTATC (3) 1.8 0.0018 P2.5 retina GTCAACCCCA (5) 1.8 0.0018 P2.5 retina TGGAGTTGGA (6) 1.8 0.0018 P4.5 retina GAGCGTTTTG (2) 73.3 0.0733 P4.5 retina AATAAAAACT (2) 39.6 0.0396 P4.5 retina AAAAAAAAAG (19) 13.9 0.0139 P4.5 retina CAAGACTGAA (9) 4 0.004 P4.5 retina GCTGCAGCAA (4) 4 0.004 P4.5 retina CCTTCTTTCA (2) 2 0.002 P4.5 retina GACAAGATGC (4) 2 0.002 P4.5 retina GAGCATTTTG (5) 2 0.002 P4.5 retina GAGCCGTTTT 2 0.002 P4.5 retina TCTCTAGTGA (3) 2 0.002 P4.5 retina TGGAGTTGGA (6) 2 0.002 P6.5 retina GAGCGTTTTG (2) 61.7 0.0617 P6.5 retina AATAAAAACT (2) 23.3 0.0233 P6.5 retina AAAAAAAAAG (19) 8.3 0.0083 P6.5 retina TGGAGTTGGA (6) 6.7 0.0067 P6.5 retina GCTGCAGCAA (4) 5 0.005 P6.5 retina CCTTCTTTCA (2) 3.3 0.0033 P6.5 retina AATCCTGGAA 1.7 0.0017 P6.5 retina AGCGTTTTGG 1.7 0.0017 P6.5 retina GCAAATGCTG (4) 1.7 0.0017 P6.5 retina TGGTCTTTGG (6) 1.7 0.0017 P10.5 crx- retina GAGCGTTTTG (2) 405 0.405 P10.5 crx- retina AATAAAAACT (2) 14.9 0.0149 P10.5 crx- retina CCTTCTTTCA (2) 7.4 0.0074 P10.5 crx- retina GTCAACCCCA (5) 7.4 0.0074 P10.5 crx- retina GCAAATGCTG (4) 5.6 0.0056 P10.5 crx- retina TGGAGTTGGA (6) 5.6 0.0056 P10.5 crx- retina GAGCCGTTTT 3.7 0.0037 P10.5 crx- retina GTTTCGAAAA (3) 3.7 0.0037 P10.5 crx- retina TCTGTAATCT (8) 3.7 0.0037 P10.5 crx- retina TGCCAGGGTG (4) 3.7 0.0037 P10.5 crx- retina AAAAAAAAAG (19) 1.9 0.0019 P10.5 crx- retina AACATTGTGG (4) 1.9 0.0019 P10.5 crx- retina AATCCTGGAA 1.9 0.0019 P10.5 crx- retina AGCGTTTTGG 1.9 0.0019 P10.5 crx- retina CAAGACTGAA (9) 1.9 0.0019 P10.5 crx- retina CTTGCCATCC (3) 1.9 0.0019 P10.5 crx- retina GACAAGATGC (4) 1.9 0.0019 P10.5 crx- retina GAGCGTTTTT 1.9 0.0019 P10.5 crx- retina GAGTGTTTTG (3) 1.9 0.0019 P10.5 crx- retina GCTGCAGCAA (4) 1.9 0.0019 P10.5 crx- retina GGTCCTTATC (3) 1.9 0.0019 P10.5 crx- retina TCTCTAGTGA (3) 1.9 0.0019 P10.5 crx+ retina GAGCGTTTTG (2) 174.9 0.1749 P10.5 crx+ retina AATAAAAACT (2) 19.2 0.0192 P10.5 crx+ retina TGGAGTTGGA (6) 9.6 0.0096 P10.5 crx+ retina AAAAAAAAAG (19) 7.7 0.0077 P10.5 crx+ retina CAAGACTGAA (9) 1.9 0.0019 P10.5 crx+ retina GAGCCGTTTT 1.9 0.0019 P10.5 crx+ retina GAGCGCTTTG 1.9 0.0019 P10.5 crx+ retina GAGCGTTTTT 1.9 0.0019 P10.5 crx+ retina GCTGCAGCAA (4) 1.9 0.0019 P10.5 crx+ retina GGTCCTTATC (3) 1.9 0.0019 P10.5 crx+ retina TCCTGTAATC 1.9 0.0019 P10.5 crx+ retina TGCCAGGGTG (4) 1.9 0.0019 Adult retinal GAGCGTTTTG (2) 98.1 0.0981 Adult retinal AATAAAAACT (2) 5.6 0.0056 Adult retinal TGGTCTTTGG (6) 3.7 0.0037 Adult retinal AAAAAAAAAG (19) 1.9 0.0019 Adult retinal GAGCCGTTTT 1.9 0.0019 ONL GAGCGTTTTG (2) 34.5 0.0345 ONL AATAAAAACT (2) 21.1 0.0211 ONL TCCTGTAATC 3.8 0.0038 ONL AAAAAAAAAG (19) 1.9 0.0019 ONL GACAAGATGC (4) 1.9 0.0019 ONL GGTCCTTATC (3) 1.9 0.0019 ONL TCTGTAATCT (8) 1.9 0.0019