Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.61526	Hmgcs1	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	13	13 66.0 cM	208715
Gene Ontology	acetyl-CoA metabolism | C21-steroid hormone biosynthesis | cholesterol biosynthesis | cytoplasm | DNA binding | hydroxymethylglutaryl-CoA synthase activity | lyase activity | nucleus | regulation of transcription, DNA-dependent | sex differentiation | transcription factor activity | transcription factor complex
Human Homolog	HMGCS1[3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 142 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAATTTTTTT (7) 9.8 0.0098 P8 Cb GC CTCCCTGTTG (7) 4.9 0.0049 P8 Cb GC TACACAGCAC (3) 4.9 0.0049 P8 Cb GC TGAAATTTTC 4.9 0.0049 P8 Cb GC CAGTTTAGTT 3.3 0.0033 P8 Cb GC AATCTTTTTC (5) 1.6 0.0016 P8 Cb GC CACAATCTCC (7) 1.6 0.0016 P8 Cb GC TTAGCAAGTT 1.6 0.0016 Cb medulloblastoma CTCCCTGTTG (7) 4.6 0.0046 Cb medulloblastoma GGGGAAAAAA (28) 4.6 0.0046 Cb medulloblastoma TAATTTTTTT (7) 4.6 0.0046 Cb medulloblastoma TACACAGCAC (3) 4.6 0.0046 Cb medulloblastoma CAGTTTAGTT 2.3 0.0023 Cb medulloblastoma TGAAATTTTC 2.3 0.0023 Cb medulloblastoma TTAGCAAGTT 2.3 0.0023 P8 GC+1d culture TAATTTTTTT (7) 32 0.032 P8 GC+1d culture AATCTTTTTC (5) 4.6 0.0046 P8 GC+1d culture CAGTTTAGTT 4.6 0.0046 P8 GC+1d culture CTCCCTGTTG (7) 4.6 0.0046 P8 GC+1d culture TGAAATTTTC 4.6 0.0046 P8 GC+1d culture AGCCTCAGAC (2) 1.1 0.0011 P8 GC+1d culture CACAATCTCC (7) 1.1 0.0011 P8 GC+1d culture CACCATCTCC (2) 1.1 0.0011 P8 GC+1d culture GGGGAAAAAA (28) 1.1 0.0011 P8 GC+1d culture TGGTAGTTTT 1.1 0.0011 P8 GC+1d culture TGTGTGCAAA (2) 1.1 0.0011 P8 GC+1d culture TTAGCAAGTT 1.1 0.0011 P8 GC+SHH+1d culture TAATTTTTTT (7) 22.2 0.0222 P8 GC+SHH+1d culture CTCCCTGTTG (7) 5.9 0.0059 P8 GC+SHH+1d culture CAGTTTAGTT 4.7 0.0047 P8 GC+SHH+1d culture TGAAATTTTC 4.7 0.0047 P8 GC+SHH+1d culture CACCATCTCC (2) 3.5 0.0035 P8 GC+SHH+1d culture TACACAGCAC (3) 3.5 0.0035 P8 GC+SHH+1d culture AATCTTTTTC (5) 2.3 0.0023 P8 GC+SHH+1d culture AGCTGAATAA 2.3 0.0023 P8 GC+SHH+1d culture AGCCTCAGAC (2) 1.2 0.0012 P8 GC+SHH+1d culture CACAATCTCC (7) 1.2 0.0012 P8 GC+SHH+1d culture GTCTGATTAG 1.2 0.0012 P8 GC+SHH+1d culture TGGTAGTTTT 1.2 0.0012 P8 GC+SHH+1d culture TGTGTGCAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture TTAGCAAGTT 1.2 0.0012 3T3 fibroblasts CACAATCTCC (7) 10.5 0.0105 3T3 fibroblasts CTCCCTGTTG (7) 10.5 0.0105 E15 cortex AAGCTCAAGA (6) 4.9 0.0049 E15 cortex GGGGAAAAAA (28) 4.9 0.0049 P1 cortex TAATTTTTTT (7) 27.3 0.0273 P1 cortex GTCTGATTAG 4.5 0.0045 Hypothalamus TAATTTTTTT (7) 12.7 0.0127 Hypothalamus CAGTTTAGTT 3.6 0.0036 Hypothalamus TGGTAGTTTT 3.6 0.0036 Hypothalamus AGCCTCAGAC (2) 1.8 0.0018 Hypothalamus TGAAATTTTC 1.8 0.0018 Hypothalamus TGTGTGCAAA (2) 1.8 0.0018 E12.5 retina CAGTTTAGTT 15 0.015 E12.5 retina CTCCCTGTTG (7) 13.1 0.0131 E12.5 retina TAATTTTTTT (7) 9.4 0.0094 E12.5 retina TGAAATTTTC 3.8 0.0038 E12.5 retina AAGCTCAAGA (6) 1.9 0.0019 E12.5 retina GCAAGGCAAA 1.9 0.0019 E12.5 retina GGGGAAAAAA (28) 1.9 0.0019 E12.5 retina GTCTGATTAG 1.9 0.0019 E12.5 retina TACACAGCAC (3) 1.9 0.0019 E12.5 retina TGGTAGTTTT 1.9 0.0019 E14.5 retina TAATTTTTTT (7) 16.4 0.0164 E14.5 retina AAGCTCAAGA (6) 12.8 0.0128 E14.5 retina CTCCCTGTTG (7) 3.6 0.0036 E14.5 retina TGGTAGTTTT 3.6 0.0036 E14.5 retina AATCTTTTTC (5) 1.8 0.0018 E14.5 retina AGCCTCAGAC (2) 1.8 0.0018 E14.5 retina AGCTGAATAA 1.8 0.0018 E14.5 retina CACCATCTCC (2) 1.8 0.0018 E14.5 retina CAGTTTAGTT 1.8 0.0018 E14.5 retina GCTGAAGCTT (2) 1.8 0.0018 E14.5 retina TACACAGCAC (3) 1.8 0.0018 E14.5 retina TGAAATTTTC 1.8 0.0018 E16.5 retina TAATTTTTTT (7) 9.1 0.0091 E16.5 retina TACACAGCAC (3) 9.1 0.0091 E16.5 retina AGCCTCAGAC (2) 5.4 0.0054 E16.5 retina GTCTGATTAG 5.4 0.0054 E16.5 retina AATCTTTTTC (5) 3.6 0.0036 E16.5 retina CTCCCTGTTG (7) 3.6 0.0036 E16.5 retina CAGTTTAGTT 1.8 0.0018 E16.5 retina GCCAGCCCCT (5) 1.8 0.0018 E16.5 retina GGGGAAAAAA (28) 1.8 0.0018 E16.5 retina TGAAATTTTC 1.8 0.0018 E18.5 retina TAATTTTTTT (7) 23.6 0.0236 E18.5 retina GGGGAAAAAA (28) 3.6 0.0036 E18.5 retina GTCTGATTAG 3.6 0.0036 E18.5 retina TACACAGCAC (3) 3.6 0.0036 E18.5 retina AGCCTCAGAC (2) 1.8 0.0018 E18.5 retina CACCATCTCC (2) 1.8 0.0018 E18.5 retina CAGTTTAGTT 1.8 0.0018 E18.5 retina CTCCCTGTTG (7) 1.8 0.0018 E18.5 retina TGGTAGTTTT 1.8 0.0018 E18.5 retina TTAGCAAGTT 1.8 0.0018 P0.5 retina TAATTTTTTT (7) 13.7 0.0137 P0.5 retina CACAATCTCC (7) 2 0.002 P0.5 retina CTCCCTGTTG (7) 2 0.002 P0.5 retina GCCAGCCCCT (5) 2 0.002 P0.5 retina TACACAGCAC (3) 2 0.002 P2.5 retina TAATTTTTTT (7) 19.4 0.0194 P2.5 retina CTCCCTGTTG (7) 3.5 0.0035 P2.5 retina TACACAGCAC (3) 3.5 0.0035 P2.5 retina TTAGCAAGTT 3.5 0.0035 P2.5 retina AAGCTCAAGA (6) 1.8 0.0018 P2.5 retina AATCTTTTTC (5) 1.8 0.0018 P2.5 retina AGCTGAATAA 1.8 0.0018 P2.5 retina CAGTTTAGTT 1.8 0.0018 P2.5 retina GCTGAAGCTT (2) 1.8 0.0018 P4.5 retina TAATTTTTTT (7) 13.9 0.0139 P4.5 retina AATCTTTTTC (5) 4 0.004 P4.5 retina CACAATCTCC (7) 4 0.004 P4.5 retina CAGTTTAGTT 2 0.002 P4.5 retina CTCCCTGTTG (7) 2 0.002 P4.5 retina GCAAGGCAAA 2 0.002 P6.5 retina CTCCCTGTTG (7) 5 0.005 P6.5 retina TTAGCAAGTT 5 0.005 P6.5 retina AATCTTTTTC (5) 3.3 0.0033 P6.5 retina CACAATCTCC (7) 1.7 0.0017 P6.5 retina GGGGAAAAAA (28) 1.7 0.0017 P6.5 retina TAATTTTTTT (7) 1.7 0.0017 P6.5 retina TACACAGCAC (3) 1.7 0.0017 P10.5 crx- retina TAATTTTTTT (7) 9.3 0.0093 P10.5 crx- retina CACAATCTCC (7) 3.7 0.0037 P10.5 crx- retina AATCTTTTTC (5) 1.9 0.0019 P10.5 crx- retina CTCCCTGTTG (7) 1.9 0.0019 P10.5 crx- retina GCTGAAGCTT (2) 1.9 0.0019 P10.5 crx- retina TACACAGCAC (3) 1.9 0.0019 P10.5 crx- retina TGTGTGCAAA (2) 1.9 0.0019 P10.5 crx+ retina TAATTTTTTT (7) 5.8 0.0058 P10.5 crx+ retina TGAAATTTTC 3.8 0.0038 P10.5 crx+ retina CTCCCTGTTG (7) 1.9 0.0019 P10.5 crx+ retina GTCTGATTAG 1.9 0.0019 Adult retinal TGTGTGCAAA (2) 3.7 0.0037 Adult retinal GCAAGGCAAA 1.9 0.0019 Adult retinal GCCAGCCCCT (5) 1.9 0.0019 Adult retinal TAATTTTTTT (7) 1.9 0.0019 Adult retinal TGAAATTTTC 1.9 0.0019 Adult retinal TTAGCAAGTT 1.9 0.0019 ONL AAGCTCAAGA (6) 7.7 0.0077 ONL TAATTTTTTT (7) 3.8 0.0038 ONL GCAAGGCAAA 1.9 0.0019