Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1022	D4Ucla1	DNA segment, Chr 4, University of California at Los Angeles 1	4	4 78.3 cM	28148
Mm.1022	Cdc42	cell division cycle 42 homolog (S. cerevisiae)	4	4 66.75 cM	12540
Gene Ontology	actin filament organization | filopodium | GTP binding | GTPase activity | GTPase activity | protein binding | Rho protein signal transduction | small GTPase mediated signal transduction
Human Homolog	CDC42[cell division cycle 42 (GTP binding protein, 25kDa)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 106 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGAGACAAGG (2) 6.5 0.0065 P8 Cb GC ATTCTTTATA (3) 4.9 0.0049 P8 Cb GC TATCTGCTTA (2) 4.9 0.0049 P8 Cb GC AAATGAAATA (3) 3.3 0.0033 P8 Cb GC AAGGTGGGTG (2) 3.3 0.0033 P8 Cb GC TTGGTTAAAA (2) 3.3 0.0033 P8 Cb GC GGGATCAGTC (2) 1.6 0.0016 Cb medulloblastoma TGAGACAAGG (2) 9.2 0.0092 Cb medulloblastoma ATTCTTTATA (3) 6.9 0.0069 Cb medulloblastoma AAATGAAATA (3) 2.3 0.0023 Cb medulloblastoma AAGGTGGGTG (2) 2.3 0.0023 Cb medulloblastoma TTGGTTAAAA (2) 2.3 0.0023 P8 GC+1d culture ATTCTTTATA (3) 16 0.016 P8 GC+1d culture TATCTGCTTA (2) 5.7 0.0057 P8 GC+1d culture TGAGACAAGG (2) 5.7 0.0057 P8 GC+1d culture AAATGAAATA (3) 2.3 0.0023 P8 GC+1d culture TAAGAAAATG (3) 2.3 0.0023 P8 GC+1d culture TCTCCTGATA (2) 2.3 0.0023 P8 GC+1d culture AAGGTGGGTG (2) 1.1 0.0011 P8 GC+1d culture TGGGTAGGTG (2) 1.1 0.0011 P8 GC+1d culture TTGGTTAAAA (2) 1.1 0.0011 P8 GC+SHH+1d culture TATCTGCTTA (2) 7 0.007 P8 GC+SHH+1d culture AAATGAAATA (3) 1.2 0.0012 P8 GC+SHH+1d culture AAGGTGGGTG (2) 1.2 0.0012 P8 GC+SHH+1d culture ATTCTTTATA (3) 1.2 0.0012 P8 GC+SHH+1d culture CTTGTATTGA (2) 1.2 0.0012 P8 GC+SHH+1d culture GGGATCAGTC (2) 1.2 0.0012 P8 GC+SHH+1d culture TCTCCTGATA (2) 1.2 0.0012 P8 GC+SHH+1d culture TGAGACAAGG (2) 1.2 0.0012 P8 GC+SHH+1d culture TGGGTAGGTG (2) 1.2 0.0012 P8 GC+SHH+1d culture TTGGTTAAAA (2) 1.2 0.0012 3T3 fibroblasts TGAGACAAGG (2) 14 0.014 3T3 fibroblasts TGGGTAGGTG (2) 10.5 0.0105 E15 cortex GGGATCAGTC (2) 4.9 0.0049 E15 cortex TATCTGCTTA (2) 4.9 0.0049 P1 cortex ATTCTTTATA (3) 9.1 0.0091 P1 cortex TATCTGCTTA (2) 9.1 0.0091 P1 cortex TCTCCTGATA (2) 9.1 0.0091 P1 cortex AAGGTGGGTG (2) 4.5 0.0045 P1 cortex GGGTGGGGAG (2) 4.5 0.0045 P1 cortex TTGGTTAAAA (2) 4.5 0.0045 Hypothalamus TATCTGCTTA (2) 5.4 0.0054 Hypothalamus TGAGACAAGG (2) 5.4 0.0054 Hypothalamus TGGGTAGGTG (2) 3.6 0.0036 Hypothalamus AAATGAAATA (3) 1.8 0.0018 Hypothalamus TCTCCTGATA (2) 1.8 0.0018 Hypothalamus TTGGTTAAAA (2) 1.8 0.0018 E12.5 retina ATTCTTTATA (3) 5.6 0.0056 E12.5 retina TGAGACAAGG (2) 3.8 0.0038 E12.5 retina AAGGTGGGTG (2) 1.9 0.0019 E12.5 retina GGGATCAGTC (2) 1.9 0.0019 E12.5 retina TCTCCTGATA (2) 1.9 0.0019 E14.5 retina ATTCTTTATA (3) 14.6 0.0146 E14.5 retina TTGGTTAAAA (2) 5.5 0.0055 E14.5 retina AAATGAAATA (3) 3.6 0.0036 E14.5 retina TGAGACAAGG (2) 3.6 0.0036 E14.5 retina GGGTGGGGAG (2) 1.8 0.0018 E14.5 retina TATCTGCTTA (2) 1.8 0.0018 E16.5 retina ATTCTTTATA (3) 14.5 0.0145 E16.5 retina TGAGACAAGG (2) 5.4 0.0054 E16.5 retina AAATGAAATA (3) 1.8 0.0018 E16.5 retina AAGGTGGGTG (2) 1.8 0.0018 E16.5 retina TAAGAAAATG (3) 1.8 0.0018 E16.5 retina TATCTGCTTA (2) 1.8 0.0018 E16.5 retina TTGGTTAAAA (2) 1.8 0.0018 E18.5 retina TGAGACAAGG (2) 10.9 0.0109 E18.5 retina CTTGTATTGA (2) 3.6 0.0036 E18.5 retina AAATGAAATA (3) 1.8 0.0018 E18.5 retina ATTCTTTATA (3) 1.8 0.0018 E18.5 retina GGGATCAGTC (2) 1.8 0.0018 E18.5 retina TATCTGCTTA (2) 1.8 0.0018 P0.5 retina TATCTGCTTA (2) 5.9 0.0059 P0.5 retina TGAGACAAGG (2) 3.9 0.0039 P0.5 retina ATTCTTTATA (3) 2 0.002 P2.5 retina ATTCTTTATA (3) 7 0.007 P2.5 retina TGAGACAAGG (2) 5.3 0.0053 P2.5 retina TCTCCTGATA (2) 3.5 0.0035 P2.5 retina GGGTGGGGAG (2) 1.8 0.0018 P2.5 retina TTGGTTAAAA (2) 1.8 0.0018 P4.5 retina AAATGAAATA (3) 4 0.004 P4.5 retina TCTCCTGATA (2) 4 0.004 P4.5 retina TGAGACAAGG (2) 4 0.004 P4.5 retina ATTCTTTATA (3) 2 0.002 P4.5 retina GGGATCAGTC (2) 2 0.002 P4.5 retina TTGGTTAAAA (2) 2 0.002 P6.5 retina TATCTGCTTA (2) 5 0.005 P6.5 retina TTGGTTAAAA (2) 3.3 0.0033 P6.5 retina AAATGAAATA (3) 1.7 0.0017 P6.5 retina TGAGACAAGG (2) 1.7 0.0017 P10.5 crx- retina TATCTGCTTA (2) 11.1 0.0111 P10.5 crx- retina ATTCTTTATA (3) 7.4 0.0074 P10.5 crx- retina TCTCCTGATA (2) 5.6 0.0056 P10.5 crx- retina AAATGAAATA (3) 1.9 0.0019 P10.5 crx- retina TGAGACAAGG (2) 1.9 0.0019 P10.5 crx- retina TTGGTTAAAA (2) 1.9 0.0019 P10.5 crx+ retina TATCTGCTTA (2) 5.8 0.0058 P10.5 crx+ retina AAATGAAATA (3) 1.9 0.0019 P10.5 crx+ retina AAGGTGGGTG (2) 1.9 0.0019 P10.5 crx+ retina TGAGACAAGG (2) 1.9 0.0019 Adult retinal ATTCTTTATA (3) 1.9 0.0019 Adult retinal TATCTGCTTA (2) 1.9 0.0019 Adult retinal TCTCCTGATA (2) 1.9 0.0019 ONL AAATGAAATA (3) 9.6 0.0096 ONL TCTCCTGATA (2) 5.7 0.0057 ONL ATTCTTTATA (3) 1.9 0.0019 ONL TTGGTTAAAA (2) 1.9 0.0019