Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.215034	RNU19	RNA, U19 small nucleolar	18		436583
Mm.215034	1110061A14Rik	RIKEN cDNA 1110061A14 gene	18		68827
Mm.215034	AY223547	cDNA sequence AY223547			448986
Mm.215034	Matr3	matrin 3	18	18 15.0 cM	17184
Mm.215034	2810017I02Rik	RIKEN cDNA 2810017I02 gene	18		69967
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 132 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TATAATCTGT (5) 24.5 0.0245 P8 Cb GC TTTGGATGTT (5) 8.2 0.0082 P8 Cb GC TGACCTTTGT (6) 4.9 0.0049 P8 Cb GC TTGAAAAAAA (9) 4.9 0.0049 P8 Cb GC AATGAAGTTC (5) 1.6 0.0016 P8 Cb GC AATTAGAAGC (5) 1.6 0.0016 P8 Cb GC ACATTAAAAG (5) 1.6 0.0016 P8 Cb GC AGGTCACCCT (5) 1.6 0.0016 P8 Cb GC CAAAAAGGCA (5) 1.6 0.0016 Cb medulloblastoma TATAATCTGT (5) 6.9 0.0069 Cb medulloblastoma TGGCCGGCTA (5) 6.9 0.0069 Cb medulloblastoma TTTGGATGTT (5) 6.9 0.0069 Cb medulloblastoma CAGGATTCCT (5) 4.6 0.0046 Cb medulloblastoma CTTTAACAAA (5) 4.6 0.0046 Cb medulloblastoma AATGAAGTTC (5) 2.3 0.0023 Cb medulloblastoma CAAAAAGGCA (5) 2.3 0.0023 Cb medulloblastoma GAAGTCGTTC (6) 2.3 0.0023 Cb medulloblastoma GTGGCATATA (5) 2.3 0.0023 Cb medulloblastoma TTGAAAAAAA (9) 2.3 0.0023 P8 GC+1d culture TATAATCTGT (5) 14.8 0.0148 P8 GC+1d culture TTTGGATGTT (5) 6.8 0.0068 P8 GC+1d culture CTGTTTAGAT (5) 3.4 0.0034 P8 GC+1d culture TGGCCGGCTA (5) 2.3 0.0023 P8 GC+1d culture AATGAAGTTC (5) 1.1 0.0011 P8 GC+1d culture CAGGATTCCT (5) 1.1 0.0011 P8 GC+1d culture CTTTAACAAA (5) 1.1 0.0011 P8 GC+1d culture TTGAAAAAAA (9) 1.1 0.0011 P8 GC+SHH+1d culture TATAATCTGT (5) 17.6 0.0176 P8 GC+SHH+1d culture TTTGGATGTT (5) 11.7 0.0117 P8 GC+SHH+1d culture TTGAAAAAAA (9) 9.4 0.0094 P8 GC+SHH+1d culture AATGAAGTTC (5) 2.3 0.0023 P8 GC+SHH+1d culture AATTAGAAGC (5) 2.3 0.0023 P8 GC+SHH+1d culture CTGTTTAGAT (5) 2.3 0.0023 P8 GC+SHH+1d culture AGGTCACCCT (5) 1.2 0.0012 P8 GC+SHH+1d culture CTTTAACAAA (5) 1.2 0.0012 P8 GC+SHH+1d culture GAAGTCGTTC (6) 1.2 0.0012 P8 GC+SHH+1d culture TGGCCGGCTA (5) 1.2 0.0012 3T3 fibroblasts AATTAGAAGC (5) 3.5 0.0035 E15 cortex CTTCTTGAAT (7) 4.9 0.0049 E15 cortex GTGGCATATA (5) 4.9 0.0049 E15 cortex TATAATCTGT (5) 4.9 0.0049 P1 cortex TATAATCTGT (5) 45.5 0.0455 P1 cortex CAGGATTCCT (5) 9.1 0.0091 P1 cortex ACATTAAAAG (5) 4.5 0.0045 P1 cortex TGGCCGGCTA (5) 4.5 0.0045 P1 cortex TTTGGATGTT (5) 4.5 0.0045 Hypothalamus TATAATCTGT (5) 10.9 0.0109 Hypothalamus CAGGATTCCT (5) 9.1 0.0091 Hypothalamus TTTGGATGTT (5) 9.1 0.0091 Hypothalamus TGGCCGGCTA (5) 1.8 0.0018 E12.5 retina TATAATCTGT (5) 11.3 0.0113 E12.5 retina CTTCTTGAAT (7) 1.9 0.0019 E12.5 retina TTGAAAAAAA (9) 1.9 0.0019 E14.5 retina TATAATCTGT (5) 9.1 0.0091 E14.5 retina TTTGGATGTT (5) 9.1 0.0091 E14.5 retina AATTAGAAGC (5) 1.8 0.0018 E14.5 retina CTGTTTAGAT (5) 1.8 0.0018 E14.5 retina GAAGTCGTTC (6) 1.8 0.0018 E16.5 retina TATAATCTGT (5) 9.1 0.0091 E16.5 retina TTTGGATGTT (5) 7.2 0.0072 E16.5 retina CTTCTTGAAT (7) 1.8 0.0018 E16.5 retina CTTTAACAAA (5) 1.8 0.0018 E16.5 retina GTGGCATATA (5) 1.8 0.0018 E16.5 retina TGACCTTTGT (6) 1.8 0.0018 E16.5 retina TGGCCGGCTA (5) 1.8 0.0018 E18.5 retina TATAATCTGT (5) 12.7 0.0127 E18.5 retina TTTGGATGTT (5) 10.9 0.0109 E18.5 retina CTGTTTAGAT (5) 5.5 0.0055 E18.5 retina TTGAAAAAAA (9) 5.5 0.0055 E18.5 retina ACATTAAAAG (5) 1.8 0.0018 P0.5 retina TATAATCTGT (5) 15.7 0.0157 P0.5 retina TTTGGATGTT (5) 7.9 0.0079 P0.5 retina CACAAAAAAT (6) 3.9 0.0039 P0.5 retina TTGAAAAAAA (9) 3.9 0.0039 P0.5 retina CAGGATTCCT (5) 2 0.002 P2.5 retina TATAATCTGT (5) 12.3 0.0123 P2.5 retina TTTGGATGTT (5) 8.8 0.0088 P2.5 retina AATTAGAAGC (5) 3.5 0.0035 P2.5 retina AATGAAGTTC (5) 1.8 0.0018 P2.5 retina AGGTCACCCT (5) 1.8 0.0018 P2.5 retina CACAAAAAAT (6) 1.8 0.0018 P2.5 retina CTGTTTAGAT (5) 1.8 0.0018 P2.5 retina CTTCTTGAAT (7) 1.8 0.0018 P2.5 retina GTGGCATATA (5) 1.8 0.0018 P4.5 retina TTTGGATGTT (5) 17.8 0.0178 P4.5 retina TATAATCTGT (5) 11.9 0.0119 P4.5 retina TTGAAAAAAA (9) 7.9 0.0079 P4.5 retina AGGTCACCCT (5) 2 0.002 P4.5 retina CAGGATTCCT (5) 2 0.002 P6.5 retina TTTGGATGTT (5) 13.3 0.0133 P6.5 retina TATAATCTGT (5) 10 0.01 P6.5 retina CTGTTTAGAT (5) 3.3 0.0033 P6.5 retina CTTTAACAAA (5) 3.3 0.0033 P6.5 retina ACATTAAAAG (5) 1.7 0.0017 P6.5 retina AGGTCACCCT (5) 1.7 0.0017 P6.5 retina GTGGCATATA (5) 1.7 0.0017 P6.5 retina TGACCTTTGT (6) 1.7 0.0017 P10.5 crx- retina TATAATCTGT (5) 13 0.013 P10.5 crx- retina TGGCCGGCTA (5) 7.4 0.0074 P10.5 crx- retina TTTGGATGTT (5) 7.4 0.0074 P10.5 crx- retina CAAAAAGGCA (5) 3.7 0.0037 P10.5 crx- retina AATGAAGTTC (5) 1.9 0.0019 P10.5 crx- retina AGGTCACCCT (5) 1.9 0.0019 P10.5 crx- retina CACAAAAAAT (6) 1.9 0.0019 P10.5 crx- retina CTGTTTAGAT (5) 1.9 0.0019 P10.5 crx- retina GTGGCATATA (5) 1.9 0.0019 P10.5 crx- retina TTGAAAAAAA (9) 1.9 0.0019 P10.5 crx+ retina TTTGGATGTT (5) 23.1 0.0231 P10.5 crx+ retina TATAATCTGT (5) 15.4 0.0154 P10.5 crx+ retina TGGCCGGCTA (5) 5.8 0.0058 P10.5 crx+ retina CTGTTTAGAT (5) 3.8 0.0038 P10.5 crx+ retina AATGAAGTTC (5) 1.9 0.0019 P10.5 crx+ retina AATTAGAAGC (5) 1.9 0.0019 P10.5 crx+ retina CAAAAAGGCA (5) 1.9 0.0019 P10.5 crx+ retina CTTTAACAAA (5) 1.9 0.0019 P10.5 crx+ retina GTGGCATATA (5) 1.9 0.0019 Adult retinal TGGCCGGCTA (5) 7.4 0.0074 Adult retinal CAGGATTCCT (5) 5.6 0.0056 Adult retinal AATGAAGTTC (5) 1.9 0.0019 Adult retinal AATTAGAAGC (5) 1.9 0.0019 Adult retinal CAAAAAGGCA (5) 1.9 0.0019 Adult retinal TATAATCTGT (5) 1.9 0.0019 Adult retinal TTGAAAAAAA (9) 1.9 0.0019 Adult retinal TTTGGATGTT (5) 1.9 0.0019 ONL TATAATCTGT (5) 7.7 0.0077 ONL TTTGGATGTT (5) 5.7 0.0057 ONL TTGAAAAAAA (9) 3.8 0.0038 ONL AATGAAGTTC (5) 1.9 0.0019 ONL AGGTCACCCT (5) 1.9 0.0019 ONL CACAAAAAAT (6) 1.9 0.0019 ONL CAGGATTCCT (5) 1.9 0.0019 ONL CTTTAACAAA (5) 1.9 0.0019