Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.257276	1110004P21Rik	RIKEN cDNA 1110004P21 gene	4		68478
Mm.257276	Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	4	4 57.6 cM	71514
Gene Ontology	biological_process unknown | cellular_component unknown | nucleic acid binding
Human Homolog	SFPQ[splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 135 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGTCAGCTAA (2) 21.2 0.0212 P8 Cb GC GCAAATCCAA (2) 19.6 0.0196 P8 Cb GC AATAGCAAAG (2) 4.9 0.0049 P8 Cb GC CGTACTGAGC (2) 4.9 0.0049 P8 Cb GC TTCCTGAATT (3) 4.9 0.0049 P8 Cb GC GACATCAACT (3) 3.3 0.0033 P8 Cb GC GAGGAACTTC (2) 3.3 0.0033 P8 Cb GC GCACATTTGA (2) 3.3 0.0033 P8 Cb GC TTGTGTGCTG (2) 3.3 0.0033 P8 Cb GC ATTCCGAATT (2) 1.6 0.0016 Cb medulloblastoma GCAAATCCAA (2) 6.9 0.0069 Cb medulloblastoma GGTCAGCTAA (2) 6.9 0.0069 Cb medulloblastoma TTGTGTGCTG (2) 2.3 0.0023 P8 GC+1d culture CGTACTGAGC (2) 10.3 0.0103 P8 GC+1d culture GGTCAGCTAA (2) 10.3 0.0103 P8 GC+1d culture AATAGCAAAG (2) 9.1 0.0091 P8 GC+1d culture TTGTGTGCTG (2) 2.3 0.0023 P8 GC+1d culture CACTGGAGGT (2) 1.1 0.0011 P8 GC+1d culture GACATCAACT (3) 1.1 0.0011 P8 GC+1d culture GCAAATCCAA (2) 1.1 0.0011 P8 GC+SHH+1d culture CGTACTGAGC (2) 11.7 0.0117 P8 GC+SHH+1d culture GGTCAGCTAA (2) 9.4 0.0094 P8 GC+SHH+1d culture AATAGCAAAG (2) 7 0.007 P8 GC+SHH+1d culture CCCATTCAAA (2) 2.3 0.0023 P8 GC+SHH+1d culture GCAAATCCAA (2) 2.3 0.0023 P8 GC+SHH+1d culture TTGTGTGCTG (2) 2.3 0.0023 P8 GC+SHH+1d culture GACATCAACT (3) 1.2 0.0012 P8 GC+SHH+1d culture TAGCCCATCC (2) 1.2 0.0012 P8 GC+SHH+1d culture TATTAAGATT (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTAACAATC (2) 1.2 0.0012 3T3 fibroblasts TTGTGTGCTG (2) 21 0.021 3T3 fibroblasts CGTACTGAGC (2) 7 0.007 3T3 fibroblasts AATAGCAAAG (2) 3.5 0.0035 E15 cortex TTGTGTGCTG (2) 34.6 0.0346 E15 cortex CCCATTCAAA (2) 9.9 0.0099 E15 cortex CGTACTGAGC (2) 9.9 0.0099 E15 cortex GAGGAACTTC (2) 9.9 0.0099 E15 cortex AAAAGAGGAA (3) 4.9 0.0049 E15 cortex GCACATTTGA (2) 4.9 0.0049 E15 cortex GGTCAGCTAA (2) 4.9 0.0049 E15 cortex TTTAACAATC (2) 4.9 0.0049 P1 cortex TTGTGTGCTG (2) 54.5 0.0545 P1 cortex AAAAGAGGAA (3) 9.1 0.0091 P1 cortex CGTACTGAGC (2) 4.5 0.0045 P1 cortex GCACATTTGA (2) 4.5 0.0045 Hypothalamus GGTCAGCTAA (2) 7.2 0.0072 Hypothalamus TTGTGTGCTG (2) 5.4 0.0054 E12.5 retina GGTCAGCTAA (2) 11.3 0.0113 E12.5 retina CGTACTGAGC (2) 7.5 0.0075 E12.5 retina AATAGCAAAG (2) 5.6 0.0056 E12.5 retina TTGTGTGCTG (2) 3.8 0.0038 E12.5 retina GCACATTTGA (2) 1.9 0.0019 E14.5 retina GGTCAGCTAA (2) 16.4 0.0164 E14.5 retina TAGCCCATCC (2) 3.6 0.0036 E14.5 retina CGTACTGAGC (2) 1.8 0.0018 E14.5 retina GAGGAACTTC (2) 1.8 0.0018 E14.5 retina GCAAATCCAA (2) 1.8 0.0018 E14.5 retina GTGGTATTAG (2) 1.8 0.0018 E14.5 retina TTCCTGAATT (3) 1.8 0.0018 E14.5 retina TTGTGTGCTG (2) 1.8 0.0018 E14.5 retina TTTAACAATC (2) 1.8 0.0018 E16.5 retina GGTCAGCTAA (2) 21.7 0.0217 E16.5 retina TTGTGTGCTG (2) 7.2 0.0072 E16.5 retina GCAAATCCAA (2) 3.6 0.0036 E16.5 retina AATAGCAAAG (2) 1.8 0.0018 E16.5 retina GGAGATCCCT (2) 1.8 0.0018 E16.5 retina TTCCTGAATT (3) 1.8 0.0018 E16.5 retina TTTAACAATC (2) 1.8 0.0018 E18.5 retina GGTCAGCTAA (2) 14.6 0.0146 E18.5 retina TTGTGTGCTG (2) 9.1 0.0091 E18.5 retina AATAGCAAAG (2) 5.5 0.0055 E18.5 retina CACTGGAGGT (2) 3.6 0.0036 E18.5 retina CCCATTCAAA (2) 1.8 0.0018 E18.5 retina GGAGATCCCT (2) 1.8 0.0018 E18.5 retina TATTAAGATT (2) 1.8 0.0018 E18.5 retina TTTAACAATC (2) 1.8 0.0018 P0.5 retina GGTCAGCTAA (2) 29.4 0.0294 P0.5 retina CGTACTGAGC (2) 7.9 0.0079 P0.5 retina TTGTGTGCTG (2) 5.9 0.0059 P0.5 retina AATAGCAAAG (2) 3.9 0.0039 P0.5 retina AAAAGAGGAA (3) 2 0.002 P0.5 retina GTGGTATTAG (2) 2 0.002 P2.5 retina GGTCAGCTAA (2) 21.1 0.0211 P2.5 retina TTGTGTGCTG (2) 21.1 0.0211 P2.5 retina AATAGCAAAG (2) 7 0.007 P2.5 retina CGTACTGAGC (2) 1.8 0.0018 P2.5 retina TATTAAGATT (2) 1.8 0.0018 P4.5 retina GGTCAGCTAA (2) 25.8 0.0258 P4.5 retina TTGTGTGCTG (2) 7.9 0.0079 P4.5 retina CCCATTCAAA (2) 4 0.004 P4.5 retina GTGGTATTAG (2) 4 0.004 P4.5 retina AAAAGAGGAA (3) 2 0.002 P4.5 retina AATAGCAAAG (2) 2 0.002 P4.5 retina ATTCCGAATT (2) 2 0.002 P4.5 retina CGTACTGAGC (2) 2 0.002 P4.5 retina GACATCAACT (3) 2 0.002 P4.5 retina GCAAATCCAA (2) 2 0.002 P4.5 retina TAGCCCATCC (2) 2 0.002 P4.5 retina TTCCTGAATT (3) 2 0.002 P6.5 retina TTGTGTGCTG (2) 15 0.015 P6.5 retina GGTCAGCTAA (2) 11.7 0.0117 P6.5 retina AATAGCAAAG (2) 6.7 0.0067 P6.5 retina ATTCCGAATT (2) 3.3 0.0033 P6.5 retina TTTAACAATC (2) 3.3 0.0033 P6.5 retina CCCATTCAAA (2) 1.7 0.0017 P6.5 retina CGTACTGAGC (2) 1.7 0.0017 P6.5 retina GCAAATCCAA (2) 1.7 0.0017 P6.5 retina TTCCTGAATT (3) 1.7 0.0017 P10.5 crx- retina GGTCAGCTAA (2) 9.3 0.0093 P10.5 crx- retina GTGGTATTAG (2) 5.6 0.0056 P10.5 crx- retina TTGTGTGCTG (2) 5.6 0.0056 P10.5 crx- retina AATAGCAAAG (2) 3.7 0.0037 P10.5 crx- retina GAGGAACTTC (2) 1.9 0.0019 P10.5 crx- retina GCAAATCCAA (2) 1.9 0.0019 P10.5 crx- retina GGAGATCCCT (2) 1.9 0.0019 P10.5 crx+ retina CGTACTGAGC (2) 7.7 0.0077 P10.5 crx+ retina TTGTGTGCTG (2) 7.7 0.0077 P10.5 crx+ retina GGTCAGCTAA (2) 5.8 0.0058 P10.5 crx+ retina AATAGCAAAG (2) 3.8 0.0038 P10.5 crx+ retina CCCATTCAAA (2) 1.9 0.0019 P10.5 crx+ retina GCAAATCCAA (2) 1.9 0.0019 P10.5 crx+ retina GTGGTATTAG (2) 1.9 0.0019 Adult retinal GGTCAGCTAA (2) 11.1 0.0111 Adult retinal AAAAGAGGAA (3) 5.6 0.0056 Adult retinal TTGTGTGCTG (2) 5.6 0.0056 Adult retinal CGTACTGAGC (2) 3.7 0.0037 Adult retinal AATAGCAAAG (2) 1.9 0.0019 ONL ATTCCGAATT (2) 3.8 0.0038 ONL GGTCAGCTAA (2) 3.8 0.0038 ONL AAAAGAGGAA (3) 1.9 0.0019 ONL AATAGCAAAG (2) 1.9 0.0019 ONL GAGGAACTTC (2) 1.9 0.0019 ONL TATTAAGATT (2) 1.9 0.0019 ONL TTCCTGAATT (3) 1.9 0.0019 ONL TTGTGTGCTG (2) 1.9 0.0019