Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.289662
Ddx3x
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
X
1 7.0 cM
13205
Mm.289662
Fin14
fibroblast growth factor inducible 14
X
6 42.0 cM
14209
Gene Ontology
integral to membrane
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 65 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGCTGTGCAT
(
2
)
37.5
0.0375
P8 Cb GC
CTAGTGTTGA
(
3
)
9.8
0.0098
P8 Cb GC
TGGCAGTGGA
(
3
)
3.3
0.0033
P8 Cb GC
GTATTTATAG
(
3
)
1.6
0.0016
P8 Cb GC
TAACTTAGCC
(
2
)
1.6
0.0016
P8 Cb GC
TGGTTATCTT
(
2
)
1.6
0.0016
Cb medulloblastoma
TGCTGTGCAT
(
2
)
16.2
0.0162
Cb medulloblastoma
CTAGTGTTGA
(
3
)
2.3
0.0023
Cb medulloblastoma
GTATTTATAG
(
3
)
2.3
0.0023
Cb medulloblastoma
TGGCAGTGGA
(
3
)
2.3
0.0023
P8 GC+1d culture
TGCTGTGCAT
(
2
)
20.5
0.0205
P8 GC+1d culture
GTATTTATAG
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TGCTGTGCAT
(
2
)
31.6
0.0316
P8 GC+SHH+1d culture
TAACTTAGCC
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
GTATTTATAG
(
3
)
1.2
0.0012
3T3 fibroblasts
TGCTGTGCAT
(
2
)
10.5
0.0105
3T3 fibroblasts
CTAGTGTTGA
(
3
)
3.5
0.0035
E15 cortex
CTAGTGTTGA
(
3
)
4.9
0.0049
E15 cortex
TGCTGTGCAT
(
2
)
4.9
0.0049
P1 cortex
CTAGTGTTGA
(
3
)
18.2
0.0182
P1 cortex
TGCTGTGCAT
(
2
)
9.1
0.0091
Hypothalamus
TGCTGTGCAT
(
2
)
19.9
0.0199
Hypothalamus
TGGCAGTGGA
(
3
)
3.6
0.0036
Hypothalamus
TAACTTAGCC
(
2
)
1.8
0.0018
E12.5 retina
TGCTGTGCAT
(
2
)
50.7
0.0507
E12.5 retina
TAACTTAGCC
(
2
)
3.8
0.0038
E12.5 retina
CTAGTGTTGA
(
3
)
1.9
0.0019
E14.5 retina
TGCTGTGCAT
(
2
)
20
0.02
E14.5 retina
CTAGTGTTGA
(
3
)
5.5
0.0055
E14.5 retina
TGGTTATCTT
(
2
)
3.6
0.0036
E16.5 retina
TGCTGTGCAT
(
2
)
39.8
0.0398
E16.5 retina
CTAGTGTTGA
(
3
)
1.8
0.0018
E16.5 retina
TGGTTATCTT
(
2
)
1.8
0.0018
E18.5 retina
TGCTGTGCAT
(
2
)
14.6
0.0146
E18.5 retina
GTATTTATAG
(
3
)
3.6
0.0036
E18.5 retina
CTAGTGTTGA
(
3
)
1.8
0.0018
P0.5 retina
TGCTGTGCAT
(
2
)
25.5
0.0255
P0.5 retina
CTAGTGTTGA
(
3
)
5.9
0.0059
P0.5 retina
TGGCAGTGGA
(
3
)
3.9
0.0039
P0.5 retina
TAACTTAGCC
(
2
)
2
0.002
P2.5 retina
TGCTGTGCAT
(
2
)
51
0.051
P2.5 retina
CTAGTGTTGA
(
3
)
3.5
0.0035
P2.5 retina
GTATTTATAG
(
3
)
3.5
0.0035
P2.5 retina
TAACTTAGCC
(
2
)
1.8
0.0018
P2.5 retina
TGGCAGTGGA
(
3
)
1.8
0.0018
P4.5 retina
TGCTGTGCAT
(
2
)
21.8
0.0218
P4.5 retina
CTAGTGTTGA
(
3
)
4
0.004
P4.5 retina
GTATTTATAG
(
3
)
2
0.002
P4.5 retina
TGGCAGTGGA
(
3
)
2
0.002
P6.5 retina
TGCTGTGCAT
(
2
)
41.7
0.0417
P6.5 retina
CTAGTGTTGA
(
3
)
5
0.005
P6.5 retina
GTATTTATAG
(
3
)
1.7
0.0017
P6.5 retina
TAACTTAGCC
(
2
)
1.7
0.0017
P6.5 retina
TGGCAGTGGA
(
3
)
1.7
0.0017
P10.5 crx- retina
TGCTGTGCAT
(
2
)
14.9
0.0149
P10.5 crx- retina
TAACTTAGCC
(
2
)
1.9
0.0019
P10.5 crx- retina
TGGCAGTGGA
(
3
)
1.9
0.0019
P10.5 crx+ retina
TGCTGTGCAT
(
2
)
48.1
0.0481
P10.5 crx+ retina
CTAGTGTTGA
(
3
)
1.9
0.0019
P10.5 crx+ retina
GTATTTATAG
(
3
)
1.9
0.0019
P10.5 crx+ retina
TAACTTAGCC
(
2
)
1.9
0.0019
Adult retinal
TGCTGTGCAT
(
2
)
16.7
0.0167
Adult retinal
TAACTTAGCC
(
2
)
1.9
0.0019
Adult retinal
TGGTTATCTT
(
2
)
1.9
0.0019
ONL
TGCTGTGCAT
(
2
)
21.1
0.0211
