Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4269	5730422P05Rik	RIKEN cDNA 5730422P05 gene	18		67762
Mm.4269	Tcf4	transcription factor 4	18		21413
Mm.4269	4732423E21Rik	RIKEN cDNA 4732423E21 gene	18		106967
Mm.4269	6030446J10Rik	RIKEN cDNA 6030446J10 gene	18		320848
Mm.4269	9630026C02Rik	RIKEN cDNA 9630026C02 gene	18		320591
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 161 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTCAGATTTT (6) 32.6 0.0326 P8 Cb GC ACCGTTCTGT (5) 21.2 0.0212 P8 Cb GC GGACAGATGT (5) 13.1 0.0131 P8 Cb GC TGTTACTGAA (5) 11.4 0.0114 P8 Cb GC TTGTGCTTGT (5) 8.2 0.0082 P8 Cb GC ATGTTTGTTT (5) 4.9 0.0049 P8 Cb GC GGACTTGAAG (6) 4.9 0.0049 P8 Cb GC TAGACTCTTG (7) 4.9 0.0049 P8 Cb GC AAAAAATTGA (6) 3.3 0.0033 P8 Cb GC GATATTACAA (5) 3.3 0.0033 P8 Cb GC AAATTGCAGC (6) 1.6 0.0016 P8 Cb GC AACGTTTTTG (5) 1.6 0.0016 P8 Cb GC TATCAGTGCC (5) 1.6 0.0016 P8 Cb GC TATTCAGAAA (6) 1.6 0.0016 P8 Cb GC TTCTCACCAG (5) 1.6 0.0016 Cb medulloblastoma ACCGTTCTGT (5) 9.2 0.0092 Cb medulloblastoma AAATTGCAGC (6) 2.3 0.0023 Cb medulloblastoma GGACTTGAAG (6) 2.3 0.0023 Cb medulloblastoma TATTAAGGAA (5) 2.3 0.0023 Cb medulloblastoma TTATCATAAA (5) 2.3 0.0023 P8 GC+1d culture ACCGTTCTGT (5) 29.7 0.0297 P8 GC+1d culture TGTTACTGAA (5) 20.5 0.0205 P8 GC+1d culture GTCAGATTTT (6) 16 0.016 P8 GC+1d culture TTGTGCTTGT (5) 8 0.008 P8 GC+1d culture TATCAGTGCC (5) 4.6 0.0046 P8 GC+1d culture AAATTGCAGC (6) 3.4 0.0034 P8 GC+1d culture TAGACTCTTG (7) 3.4 0.0034 P8 GC+1d culture GATATTACAA (5) 2.3 0.0023 P8 GC+1d culture GGACAGATGT (5) 2.3 0.0023 P8 GC+1d culture TATTCAGAAA (6) 2.3 0.0023 P8 GC+1d culture TGATTCGCTG (5) 2.3 0.0023 P8 GC+1d culture ATGTGACTTT (7) 1.1 0.0011 P8 GC+1d culture CAGCATTGCC (5) 1.1 0.0011 P8 GC+1d culture GGTTTGTAAA (5) 1.1 0.0011 P8 GC+1d culture TATTAAGGAA (5) 1.1 0.0011 P8 GC+1d culture TCGTTTTCTT (5) 1.1 0.0011 P8 GC+1d culture TTATCATAAA (5) 1.1 0.0011 P8 GC+1d culture TTCTCACCAG (5) 1.1 0.0011 P8 GC+SHH+1d culture ACCGTTCTGT (5) 29.3 0.0293 P8 GC+SHH+1d culture GTCAGATTTT (6) 22.2 0.0222 P8 GC+SHH+1d culture TGTTACTGAA (5) 10.5 0.0105 P8 GC+SHH+1d culture GGTTTGTAAA (5) 4.7 0.0047 P8 GC+SHH+1d culture GGACAGATGT (5) 3.5 0.0035 P8 GC+SHH+1d culture AAAAAATTGA (6) 2.3 0.0023 P8 GC+SHH+1d culture AAATTGCAGC (6) 2.3 0.0023 P8 GC+SHH+1d culture ATGTGACTTT (7) 2.3 0.0023 P8 GC+SHH+1d culture TATCAGTGCC (5) 2.3 0.0023 P8 GC+SHH+1d culture TCGTTTTCTT (5) 2.3 0.0023 P8 GC+SHH+1d culture TTGTGCTTGT (5) 2.3 0.0023 P8 GC+SHH+1d culture CCTGACCAAT (6) 1.2 0.0012 P8 GC+SHH+1d culture TAGACTCTTG (7) 1.2 0.0012 P8 GC+SHH+1d culture TATTAAGGAA (5) 1.2 0.0012 P8 GC+SHH+1d culture TGATTCGCTG (5) 1.2 0.0012 P8 GC+SHH+1d culture TTCTCACCAG (5) 1.2 0.0012 3T3 fibroblasts TATCAGTGCC (5) 7 0.007 3T3 fibroblasts CCAAGATTGT (6) 3.5 0.0035 3T3 fibroblasts GGACAGATGT (5) 3.5 0.0035 E15 cortex GTCAGATTTT (6) 24.7 0.0247 E15 cortex AAAAAATTGA (6) 9.9 0.0099 E15 cortex ACCGTTCTGT (5) 9.9 0.0099 E15 cortex GGACAGATGT (5) 9.9 0.0099 E15 cortex GGACTTGAAG (6) 9.9 0.0099 E15 cortex TATCAGTGCC (5) 4.9 0.0049 E15 cortex TGTTACTGAA (5) 4.9 0.0049 P1 cortex AAAAAATTGA (6) 22.7 0.0227 P1 cortex TTGTGCTTGT (5) 22.7 0.0227 P1 cortex GTCAGATTTT (6) 13.6 0.0136 P1 cortex ACCGTTCTGT (5) 9.1 0.0091 P1 cortex GGACAGATGT (5) 9.1 0.0091 P1 cortex GGACTTGAAG (6) 9.1 0.0091 P1 cortex CCAAGATTGT (6) 4.5 0.0045 P1 cortex TATCAGTGCC (5) 4.5 0.0045 P1 cortex TATTAAGGAA (5) 4.5 0.0045 P1 cortex TCGTTTTCTT (5) 4.5 0.0045 Hypothalamus AAAAAATTGA (6) 1.8 0.0018 Hypothalamus AAATTGCAGC (6) 1.8 0.0018 Hypothalamus GGACTTGAAG (6) 1.8 0.0018 Hypothalamus GTCAGATTTT (6) 1.8 0.0018 E12.5 retina AAATTGCAGC (6) 1.9 0.0019 E12.5 retina ACCGTTCTGT (5) 1.9 0.0019 E12.5 retina GTCAGATTTT (6) 1.9 0.0019 E12.5 retina TAGACTCTTG (7) 1.9 0.0019 E12.5 retina TATTCAGAAA (6) 1.9 0.0019 E12.5 retina TGTTTCCATT (5) 1.9 0.0019 E14.5 retina ACCGTTCTGT (5) 5.5 0.0055 E14.5 retina GTCAGATTTT (6) 5.5 0.0055 E14.5 retina CAGCATTGCC (5) 1.8 0.0018 E14.5 retina GGACAGATGT (5) 1.8 0.0018 E14.5 retina TAGACTCTTG (7) 1.8 0.0018 E16.5 retina ACCGTTCTGT (5) 9.1 0.0091 E16.5 retina GTCAGATTTT (6) 5.4 0.0054 E16.5 retina TGTTTCCATT (5) 3.6 0.0036 E16.5 retina AACGTTTTTG (5) 1.8 0.0018 E16.5 retina CCAAGATTGT (6) 1.8 0.0018 E16.5 retina TGTTACTGAA (5) 1.8 0.0018 E18.5 retina ACCGTTCTGT (5) 7.3 0.0073 E18.5 retina GTCAGATTTT (6) 7.3 0.0073 E18.5 retina AAAAAATTGA (6) 5.5 0.0055 E18.5 retina AAATTGCAGC (6) 3.6 0.0036 E18.5 retina TAGACTCTTG (7) 3.6 0.0036 E18.5 retina TGTTACTGAA (5) 3.6 0.0036 E18.5 retina CAGCATTGCC (5) 1.8 0.0018 P0.5 retina ACCGTTCTGT (5) 5.9 0.0059 P0.5 retina GGACAGATGT (5) 5.9 0.0059 P0.5 retina AAAAAATTGA (6) 3.9 0.0039 P0.5 retina AACGTTTTTG (5) 2 0.002 P0.5 retina ATGTGACTTT (7) 2 0.002 P0.5 retina GTCAGATTTT (6) 2 0.002 P0.5 retina TGTTACTGAA (5) 2 0.002 P0.5 retina TTATCATAAA (5) 2 0.002 P2.5 retina ACCGTTCTGT (5) 14.1 0.0141 P2.5 retina TGTTACTGAA (5) 10.6 0.0106 P2.5 retina GTCAGATTTT (6) 8.8 0.0088 P2.5 retina ATGTTTGTTT (5) 3.5 0.0035 P2.5 retina AAAAAATTGA (6) 1.8 0.0018 P2.5 retina CAGCATTGCC (5) 1.8 0.0018 P2.5 retina CCAAGATTGT (6) 1.8 0.0018 P2.5 retina GGACAGATGT (5) 1.8 0.0018 P2.5 retina GGTTTGTAAA (5) 1.8 0.0018 P2.5 retina TAGACTCTTG (7) 1.8 0.0018 P2.5 retina TATCAGTGCC (5) 1.8 0.0018 P2.5 retina TTGTGCTTGT (5) 1.8 0.0018 P4.5 retina ACCGTTCTGT (5) 15.9 0.0159 P4.5 retina GTCAGATTTT (6) 4 0.004 P4.5 retina TGTTACTGAA (5) 4 0.004 P4.5 retina AAAAAATTGA (6) 2 0.002 P4.5 retina ATGTTTGTTT (5) 2 0.002 P4.5 retina CAGCATTGCC (5) 2 0.002 P4.5 retina GGACAGATGT (5) 2 0.002 P4.5 retina TCGTTTTCTT (5) 2 0.002 P4.5 retina TTGTGCTTGT (5) 2 0.002 P6.5 retina ACCGTTCTGT (5) 6.7 0.0067 P6.5 retina AAAAAATTGA (6) 5 0.005 P6.5 retina GTCAGATTTT (6) 3.3 0.0033 P6.5 retina AAATTGCAGC (6) 1.7 0.0017 P6.5 retina AACGTTTTTG (5) 1.7 0.0017 P6.5 retina GGACAGATGT (5) 1.7 0.0017 P6.5 retina TATCAGTGCC (5) 1.7 0.0017 P6.5 retina TTATCATAAA (5) 1.7 0.0017 P10.5 crx- retina ACCGTTCTGT (5) 14.9 0.0149 P10.5 crx- retina AAAAAATTGA (6) 7.4 0.0074 P10.5 crx- retina CCTGACCAAT (6) 3.7 0.0037 P10.5 crx- retina TATTCAGAAA (6) 1.9 0.0019 P10.5 crx- retina TGTTACTGAA (5) 1.9 0.0019 P10.5 crx+ retina ACCGTTCTGT (5) 15.4 0.0154 P10.5 crx+ retina TGTTACTGAA (5) 7.7 0.0077 P10.5 crx+ retina AAATTGCAGC (6) 3.8 0.0038 P10.5 crx+ retina GTCAGATTTT (6) 3.8 0.0038 P10.5 crx+ retina CCTGACCAAT (6) 1.9 0.0019 P10.5 crx+ retina GGACAGATGT (5) 1.9 0.0019 P10.5 crx+ retina GGACTTGAAG (6) 1.9 0.0019 P10.5 crx+ retina TATTCAGAAA (6) 1.9 0.0019 P10.5 crx+ retina TTGTGCTTGT (5) 1.9 0.0019 Adult retinal ACCGTTCTGT (5) 1.9 0.0019 Adult retinal CCAAGATTGT (6) 1.9 0.0019 Adult retinal CCTGACCAAT (6) 1.9 0.0019 Adult retinal TATCAGTGCC (5) 1.9 0.0019 Adult retinal TTGTGCTTGT (5) 1.9 0.0019 ONL GTCAGATTTT (6) 3.8 0.0038 ONL ACCGTTCTGT (5) 1.9 0.0019 ONL TTCTCACCAG (5) 1.9 0.0019