Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.19187	Ptma	prothymosin alpha	1		19231
Gene Ontology	nucleus
Human Homolog	PTMA[prothymosin, alpha (gene sequence 28)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 259 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGGAAGCTGA (3) CTCCGGTGGC GAATTGGGCA GAGGACAAAG (2) GGAAAAAAAA (2) GGAAGGAAAA GGAAGGGAAA GGAGGAAAAA GGGAGGGAAA GGGGAAGGAA GGGGGAGGGA (2) GTCACACCAC GTTTCACACA TAGTAATTTA TCAGACGCGG TCATATCTGT (3) TTCATTATAA TTCCTTATAA 270.6 0.2706 Cb medulloblastoma CAGACAAGCT CTCATTATAA GGAAAAAAAA (2) GGAGGAAAAA GGGGAAGGGA GTCACACCAC GTCACACCCA GTTTCACACA TTCATAATAA TTCATTATAA 71.5 0.0715 P8 GC+1d culture AGGAAGCTGA (3) CAGACAAGCT CCCTATTTTT GAGGACAAAG (2) GGAAAAAAAA (2) GGAAGGAAAA GGAAGGGAAA GGAGGAAAAA GGAGGACACA (2) GGGGGAGGGA (2) GTCACACCAC GTCACACCCA GTTTCACACA TCATATCTGT (3) TTCATAATAA TTCATTATAA 149.4 0.1494 P8 GC+SHH+1d culture AGGAAGCTGA (3) CCACCCACAG (2) CTCATTATAA GAGGACAAAG (2) GGAAAAAAAA (2) GGAGGAAAAA GGAGGACACA (2) GGGGAGGGAA (2) GGGGGAGGGA (2) GTCACACCAC GTCACACCCA GTTTCACACA TAGTAATTTA TCAGACGCGG TCATATCTGT (3) TTCATAATAA TTCATTATAA TTCCTTATAA 224.9 0.2249 3T3 fibroblasts CCACCCACAG (2) CTCCGGTGGC GCCCACAATA GGAGGAAAAA GGGGGAGGGA (2) GTCACACCAC GTCACACCCA GTCATAGCTG (2) GTTTCACACA TCAGACGCGG TCATATCTGT (3) TTCATTATAA 91 0.091 E15 cortex AGGAAGCTGA (3) CTCCGGTGGC GGAAAAAAAA (2) GGAGGAAAAA GGGGAAGGAA GGGGAAGGGA GGGGAGGGAA (2) GTCACACCAC GTCATAGCTG (2) GTTTCACACA TCAGACGCGG TCATATCTGT (3) 162.9 0.1629 P1 cortex ACAAGTGCTT AGGAAGCTGA (3) CCCTATTTTT GGAAAAAAAA (2) GGAGGAAAAA GTCACACCAC TCATATCTGT (3) TTCATAATAA TTCATTATAA 131.6 0.1316 Hypothalamus AGGAAGCCTG CAGACAAGCT GAGGACAAAG (2) GGAAAAAAAA (2) GGAGGAAAAA GTTTCACACA TAGTAATTTA TTCATTATAA 47 0.047 E12.5 retina ACAAGTGCTT CTCCGGTGGC GAATTGGGCA GCCCACAATA GCTCACACCA (2) GGAAAAAAAA (2) GGAGGAAAAA GTCACACCAC GTCACACCCA GTTTCACACA TCAGACGCGG TCATATCTGT (3) TTCATTATAA TTCCTTATAA 184.2 0.1842 E14.5 retina AGGAAGCCTG AGGAAGCTGA (3) CCACCCACAG (2) CGCTCTCCAC GAGGAAAAGA (2) GAGGACACAA GCTCACACCA (2) GGAAAAAAAA (2) GGAGGAAAAA GGAGGACACA (2) GGGGGAGGGA (2) GTCACACCAC GTTTCACACA TCAGACGCGG TCATATCTGT (3) TTCATTATAA 103.6 0.1036 E16.5 retina AAAAGCTGTC CGCTCTCCAC GAATTGGGCA GAGGACAAAG (2) GCTCACACCA (2) GGAAAAAAAA (2) GGAGGAAAAA GGGGAAGGAA GTCACACCAC GTTTCACACA TCAGACGCGG TCATATCTGT (3) TTCATTATAA TTCCTTATAA 84.9 0.0849 E18.5 retina CGCTCTCCAC GAGGACAAAG (2) GCTCACACCA (2) GGAAAAAAAA (2) GGAAGGAAAA GGAGGAAAAA GGGGAAGGGA GTCACACCAC GTCACACCCA GTTTCACACA TCAGACGCGG TTCATTATAA 145.4 0.1454 P0.5 retina AGGAAGCCTG CGCTCTCCAC GAGGACAAAG (2) GGAAAAAAAA (2) GGAGGAAAAA GTCACACCAC GTCATAGCTG (2) GTTTCACACA TCAGACGCGG TCATATCTGT (3) TTCATTATAA TTCCTTATAA 133.6 0.1336 P2.5 retina AAAAGCTGTC CGCTCTCCAC CTCATTATAA GAATTGGGCA GAGGACAAAG (2) GAGGACACAA GGAAAAAAAA (2) GGAAGGAAAA GGAGGAAAAA GGGAGGGAAA GTCACACCAC GTCACACCCA GTCATAGCTG (2) GTTTCACACA TCATATCTGT (3) TTCATTATAA TTCCTTATAA 142.7 0.1427 P4.5 retina CCCTATTTTT GAGGAAAAGA (2) GCTCACACCA (2) GGAAAAAAAA (2) GGAAGGAAAA GGAGGAAAAA GGGGGAGGGA (2) GTCACACCAC GTCATAGCTG (2) GTTTCACACA TCAGACGCGG TCATATCTGT (3) TTCATTATAA 127 0.127 P6.5 retina AAAAGCTGTC GAGGACAAAG (2) GGAAAAAAAA (2) GGAGGAAAAA GGAGGACACA (2) GGGGAAGGAA GGGGAAGGGA GGGGAGGGAA (2) GGGGGAGGGA (2) GTCACACCAC GTCATAGCTG (2) GTTTCACACA TCATATCTGT (3) TTCATTATAA 83.5 0.0835 P10.5 crx- retina AGGAAGCTGA (3) CCCTATTTTT GCTCACACCA (2) GGAAAAAAAA (2) GGAGGAAAAA GGGGAAGGAA GGGGAAGGGA GTCACACCAC GTTTCACACA TCATATCTGT (3) TTCATTATAA 72.6 0.0726 P10.5 crx+ retina ACAAGTGCTT CTCCGGTGGC GAGGACAAAG (2) GAGGACACAA GGAAAAAAAA (2) GGAAGGAAAA GGAGGAAAAA GGGAGGGAAA GGGGGAGGGA (2) GTCACACCAC GTCACACCCA GTTTCACACA TTCATTATAA TTCCTTATAA 86.3 0.0863 Adult retinal CGCTCTCCAC CTCATTATAA CTCCGGTGGC GGAAAAAAAA (2) GGAAGGGAAA GGAGGACACA (2) GTCACACCCA GTCATAGCTG (2) GTTTCACACA TTCATTATAA 35.6 0.0356 ONL AAAAGCTGTC AGGAAGCTGA (3) GAGGAAAAGA (2) GGAAAAAAAA (2) GGAGGAAAAA GTCACACCAC GTCATAGCTG (2) GTTTCACACA TTCATTATAA 68.8 0.0688