| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | TTGTAAAAAT (2)
| 3.3 | 0.0033 |
| Cb medulloblastoma | CCAATCTGTG (2)
| 2.3 | 0.0023 |
| P8 GC+1d culture | CAATTCTTAA CCAATCTGTG (2)
| 2.2 | 0.0022 |
| P8 GC+SHH+1d culture | ATAAGGGAAA CCAATCTGTG (2) TTGTAAAAAT (2) TTTCAGTTAT
| 5.9 | 0.0059 |
| 3T3 fibroblasts | CCAATCTGTG (2) TTTCAGTTAT
| 7 | 0.007 |
| E15 cortex | AAGGGAAAAA CCAATCTGTG (2) GATGAGAAGG (2) TTGTAAAAAT (2) TTTCAGTTAT
| 29.5 | 0.0295 |
| P1 cortex | CCAATCTGTG (2)
| 4.5 | 0.0045 |
| Hypothalamus | CAATTCTTAA CCAATCTGTG (2) GATGAGAAGG (2) TTGTAAAAAT (2)
| 9 | 0.009 |
| E12.5 retina | CCAATCTGTG (2) TTGTAAAAAT (2)
| 7.5 | 0.0075 |
| E14.5 retina | CAATTCTTAA CCAATCTGTG (2) TTGTAAAAAT (2)
| 9.1 | 0.0091 |
| E16.5 retina | CCAATCTGTG (2) TTGTAAAAAT (2)
| 10.8 | 0.0108 |
| E18.5 retina | CAATTCTTAA CCAATCTGTG (2) TTGTAAAAAT (2)
| 7.2 | 0.0072 |
| P0.5 retina | CAATTCTTAA CCAATCTGTG (2)
| 11.8 | 0.0118 |
| P2.5 retina | ATAAGGGAAA CCAATCTGTG (2)
| 7.1 | 0.0071 |
| P4.5 retina | CAATTCTTAA CCAATCTGTG (2) TTGTAAAAAT (2) TTTCAGTTAT
| 8 | 0.008 |
| P6.5 retina | CCAATCTGTG (2) GATGAGAAGG (2) TTGTAAAAAT (2)
| 8.4 | 0.0084 |
| P10.5 crx- retina | AAGGGAAAAA CAATTCTTAA CCAATCTGTG (2)
| 5.7 | 0.0057 |
| P10.5 crx+ retina | AAGGGAAAAA ATAAGGGAAA CCAATCTGTG (2)
| 5.7 | 0.0057 |
| Adult retinal | CCAATCTGTG (2) TTGTAAAAAT (2)
| 7.5 | 0.0075 |
| ONL | CCAATCTGTG (2)
| 1.9 | 0.0019 |