Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.248188	Lsm4	LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)	8		50783
Gene Ontology	DNA binding | mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | regulation of transcription, DNA-dependent | ribonucleoprotein complex | RNA binding | small nucleolar ribonucleoprotein complex | spliceosome complex
Human Homolog	LSM4[LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 95 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCGGCTCACC GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) 37.4 0.0374 Cb medulloblastoma GCGGCTCACC GTGGCACACA (2) GTGGTGCACG 41.6 0.0416 P8 GC+1d culture GCGGCTCACC GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) TTTGTGTTGG 61.7 0.0617 P8 GC+SHH+1d culture GCGGCTCACC GGCGGCGCTG GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) 53.8 0.0538 3T3 fibroblasts GCGGCTCACC GTGGCACACA (2) GTGGTGCACG 35 0.035 E15 cortex GCGGCTCACC GGCGGGCTTT GTGGCACACA (2) GTGGTGCACG 88.9 0.0889 P1 cortex GTGGCACACA (2) GTGGTGCACG TTTGTGTTGG 13.5 0.0135 Hypothalamus GCGGCTCACC GGCGGCGCTG GTGGCACACA (2) GTGGTGCACG TTTGTGTTGG 37.9 0.0379 E12.5 retina GCGGCTCACC GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) 69.5 0.0695 E14.5 retina GCGGCTCACC GTGCGGGAGG (2) GTGGCACACA (2) GTGGTGCACG TTTGTGTTGG 89.2 0.0892 E16.5 retina GCGGCTCACC GTGCGGGAGG (2) GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) 83.3 0.0833 E18.5 retina CCCTGAGAAT GCGGCTCACC GCGGGCTCAC GGCGGCGCTG GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) 78.3 0.0783 P0.5 retina GCGGCTCACC GCGGGCTCAC GTGGCACACA (2) GTGGTGCACG 62.9 0.0629 P2.5 retina GCGGCTCACC GGCGGCGCTG GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) 68.7 0.0687 P4.5 retina GCGGCTCACC GCGGGCTCAC GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) TGTATTTTTT 41.7 0.0417 P6.5 retina GCGGCTCACC GCGGGCTCAC GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) 95.1 0.0951 P10.5 crx- retina GCGGCTCACC GTGCGGGAGG (2) GTGGCACACA (2) GTGGTGCACG 52 0.052 P10.5 crx+ retina GCGGCTCACC GGCGGGCTTT GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) TGTATTTTTT 78.8 0.0788 Adult retinal CCCTGAGAAT GCGGCTCACC GCGGGCTCAC GGCGGGCTTT GTGGCACACA (2) GTGGTGCACG TGTATTTTTT 57.7 0.0577 ONL CCCTGAGAAT GCGGCTCACC GTGGCACACA (2) GTGGTGCACG TCTTGCTCAG (4) 61.2 0.0612