Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.248188	Lsm4	LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)	8		50783
Gene Ontology	DNA binding | mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | regulation of transcription, DNA-dependent | ribonucleoprotein complex | RNA binding | small nucleolar ribonucleoprotein complex | spliceosome complex
Human Homolog	LSM4[LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 95 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCGGCTCACC (2) 22.8 0.0228 P8 Cb GC GTGGCACACA (30) 6.5 0.0065 P8 Cb GC GTGGTGCACG (13) 6.5 0.0065 P8 Cb GC TCTTGCTCAG (6) 1.6 0.0016 Cb medulloblastoma GCGGCTCACC (2) 20.8 0.0208 Cb medulloblastoma GTGGCACACA (30) 11.6 0.0116 Cb medulloblastoma GTGGTGCACG (13) 9.2 0.0092 P8 GC+1d culture GCGGCTCACC (2) 37.7 0.0377 P8 GC+1d culture GTGGCACACA (30) 13.7 0.0137 P8 GC+1d culture GTGGTGCACG (13) 4.6 0.0046 P8 GC+1d culture TCTTGCTCAG (6) 4.6 0.0046 P8 GC+1d culture TTTGTGTTGG (3) 1.1 0.0011 P8 GC+SHH+1d culture GCGGCTCACC (2) 46.8 0.0468 P8 GC+SHH+1d culture GTGGCACACA (30) 2.3 0.0023 P8 GC+SHH+1d culture GTGGTGCACG (13) 2.3 0.0023 P8 GC+SHH+1d culture GGCGGCGCTG (3) 1.2 0.0012 P8 GC+SHH+1d culture TCTTGCTCAG (6) 1.2 0.0012 3T3 fibroblasts GTGGTGCACG (13) 17.5 0.0175 3T3 fibroblasts GTGGCACACA (30) 14 0.014 3T3 fibroblasts GCGGCTCACC (2) 3.5 0.0035 E15 cortex GTGGTGCACG (13) 34.6 0.0346 E15 cortex GCGGCTCACC (2) 24.7 0.0247 E15 cortex GTGGCACACA (30) 24.7 0.0247 E15 cortex GGCGGGCTTT 4.9 0.0049 P1 cortex GTGGCACACA (30) 4.5 0.0045 P1 cortex GTGGTGCACG (13) 4.5 0.0045 P1 cortex TTTGTGTTGG (3) 4.5 0.0045 Hypothalamus GCGGCTCACC (2) 21.7 0.0217 Hypothalamus GTGGCACACA (30) 7.2 0.0072 Hypothalamus GGCGGCGCTG (3) 3.6 0.0036 Hypothalamus GTGGTGCACG (13) 3.6 0.0036 Hypothalamus TTTGTGTTGG (3) 1.8 0.0018 E12.5 retina GCGGCTCACC (2) 54.4 0.0544 E12.5 retina GTGGCACACA (30) 11.3 0.0113 E12.5 retina GTGGTGCACG (13) 1.9 0.0019 E12.5 retina TCTTGCTCAG (6) 1.9 0.0019 E14.5 retina GCGGCTCACC (2) 58.3 0.0583 E14.5 retina GTGGCACACA (30) 18.2 0.0182 E14.5 retina GTGGTGCACG (13) 9.1 0.0091 E14.5 retina GTGCGGGAGG (3) 1.8 0.0018 E14.5 retina TTTGTGTTGG (3) 1.8 0.0018 E16.5 retina GCGGCTCACC (2) 65.2 0.0652 E16.5 retina GTGGCACACA (30) 9.1 0.0091 E16.5 retina TCTTGCTCAG (6) 5.4 0.0054 E16.5 retina GTGCGGGAGG (3) 1.8 0.0018 E16.5 retina GTGGTGCACG (13) 1.8 0.0018 E18.5 retina GCGGCTCACC (2) 54.6 0.0546 E18.5 retina TCTTGCTCAG (6) 7.3 0.0073 E18.5 retina GTGGCACACA (30) 5.5 0.0055 E18.5 retina GTGGTGCACG (13) 5.5 0.0055 E18.5 retina CCCTGAGAAT 1.8 0.0018 E18.5 retina GCGGGCTCAC (2) 1.8 0.0018 E18.5 retina GGCGGCGCTG (3) 1.8 0.0018 P0.5 retina GCGGCTCACC (2) 47.1 0.0471 P0.5 retina GTGGCACACA (30) 11.8 0.0118 P0.5 retina GCGGGCTCAC (2) 2 0.002 P0.5 retina GTGGTGCACG (13) 2 0.002 P2.5 retina GCGGCTCACC (2) 44 0.044 P2.5 retina GTGGCACACA (30) 17.6 0.0176 P2.5 retina GTGGTGCACG (13) 3.5 0.0035 P2.5 retina GGCGGCGCTG (3) 1.8 0.0018 P2.5 retina TCTTGCTCAG (6) 1.8 0.0018 P4.5 retina GCGGCTCACC (2) 15.9 0.0159 P4.5 retina GTGGCACACA (30) 11.9 0.0119 P4.5 retina GTGGTGCACG (13) 5.9 0.0059 P4.5 retina TCTTGCTCAG (6) 4 0.004 P4.5 retina GCGGGCTCAC (2) 2 0.002 P4.5 retina TGTATTTTTT (2) 2 0.002 P6.5 retina GCGGCTCACC (2) 53.4 0.0534 P6.5 retina GTGGCACACA (30) 26.7 0.0267 P6.5 retina GTGGTGCACG (13) 6.7 0.0067 P6.5 retina TCTTGCTCAG (6) 5 0.005 P6.5 retina GCGGGCTCAC (2) 3.3 0.0033 P10.5 crx- retina GCGGCTCACC (2) 29.7 0.0297 P10.5 crx- retina GTGGCACACA (30) 13 0.013 P10.5 crx- retina GTGGTGCACG (13) 7.4 0.0074 P10.5 crx- retina GTGCGGGAGG (3) 1.9 0.0019 P10.5 crx+ retina GCGGCTCACC (2) 50 0.05 P10.5 crx+ retina GTGGTGCACG (13) 13.5 0.0135 P10.5 crx+ retina GTGGCACACA (30) 7.7 0.0077 P10.5 crx+ retina TCTTGCTCAG (6) 3.8 0.0038 P10.5 crx+ retina GGCGGGCTTT 1.9 0.0019 P10.5 crx+ retina TGTATTTTTT (2) 1.9 0.0019 Adult retinal GCGGCTCACC (2) 38.9 0.0389 Adult retinal GTGGCACACA (30) 5.6 0.0056 Adult retinal GTGGTGCACG (13) 5.6 0.0056 Adult retinal CCCTGAGAAT 1.9 0.0019 Adult retinal GCGGGCTCAC (2) 1.9 0.0019 Adult retinal GGCGGGCTTT 1.9 0.0019 Adult retinal TGTATTTTTT (2) 1.9 0.0019 ONL GCGGCTCACC (2) 28.7 0.0287 ONL GTGGCACACA (30) 24.9 0.0249 ONL GTGGTGCACG (13) 3.8 0.0038 ONL CCCTGAGAAT 1.9 0.0019 ONL TCTTGCTCAG (6) 1.9 0.0019