Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.260374	Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	15	15 19.7 cM	20356
Gene Ontology	axon guidance | axon guidance receptor activity | development | extracellular space | integral to membrane | integral to membrane | membrane | neurogenesis | receptor activity
Human Homolog	SEMA5A[sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAACCTGTC GATTTCCCAG TGGCCAAGAT TTAATGTGAG 14.7 0.0147 Cb medulloblastoma AAGCAAAGAG CACTCAAAAA GAAACCTGTC GATTTCCCAG 20.8 0.0208 P8 GC+1d culture AAGCAAAGAG GATTTCCCAG TTTCTTTTCT (2) 16 0.016 P8 GC+SHH+1d culture CACTCAAAAA GAAACCTGTC GATTTCCCAG 16.4 0.0164 3T3 fibroblasts GAAACCTGTC GATTTCCCAG 17.5 0.0175 E15 cortex GAAACCTGTC GAACCAATTA TTAATGTGAG 19.7 0.0197 P1 cortex GATTTCCCAG TTTCTTTTCT (2) 13.6 0.0136 Hypothalamus GAAACCTGTC GATTTCCCAG 3.6 0.0036 E12.5 retina AAGCAAAGAG GAAACCTGTC GAACCAATTG GATTTCCCAG 39.5 0.0395 E14.5 retina GAAACCTGTC GAACCAATTG GATTTCCCAG 18.2 0.0182 E16.5 retina GATTTCCCAG 3.6 0.0036 E18.5 retina GAAACCTGTC GAACCAATTA GATTTCCCAG TTAATGTGAG 23.6 0.0236 P0.5 retina GATTTCCCAG TTAATGTGAG 19.7 0.0197 P2.5 retina GAAACCTGTC GATTTCCCAG 19.4 0.0194 P4.5 retina GAAACCTGTC GATTTCCCAG TGGCCAAGAT TTAATGTGAG 17.8 0.0178 P6.5 retina GAAACCTGTC GAACCAATTA GAACCAATTG GATTTCCCAG TTTCTTTTCT (2) 23.5 0.0235 P10.5 crx- retina GAAACCTGTC GATTTCCCAG 7.5 0.0075 P10.5 crx+ retina GATTTCCCAG 11.5 0.0115 Adult retinal GAAACCTGTC GATTTCCCAG 3.8 0.0038 ONL GAAACCTGTC GATTTCCCAG TTAATGTGAG 13.3 0.0133