Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271814	5730405M06Rik	RIKEN cDNA 5730405M06 gene	11		320690
Mm.271814	A230020K14Rik	RIKEN cDNA A230020K14 gene	11		319274
Mm.271814	Ncor1	nuclear receptor co-repressor 1	11	11 B2	20185
Gene Ontology	DNA binding | nucleus | receptor activity | regulation of transcription, DNA-dependent
Human Homolog	NCOR1[nuclear receptor co-repressor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

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SAGE Tags

Total 160 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATTAAAAAA AATTAAAAAT (4) CAACAGCTGC CCAGCTTAAC (3) CGCCCCATCT (3) GATGAGGAAG (5) GGTATGTTAT (5) GTGCAGGAGG (2) GTGGCGCACG 35.9 0.0359 Cb medulloblastoma AATTAAAAAA AATTAAAAAT (4) CCTGCCTCCC (3) GATGAGGAAG (5) GGTATGTTAT (5) GTGGCGCACG 20.7 0.0207 P8 GC+1d culture AATTAAAAAA ATGTCTTTAA (3) CGCCCCATCT (3) GGTATGTTAT (5) GTCAGTCAAA GTGCAGGAGG (2) GTGGCGCACG GTTTTCTTAA TCCAGCAGAA TGGTGGCTGG 22.6 0.0226 P8 GC+SHH+1d culture AATTAAAAAA AATTAAAAAT (4) ATAGCCAGGG CCAGCTTAAC (3) CGCCCCATCT (3) GAAGCGTGGG GGTATGTTAT (5) GTCAGTCAAA GTGGCGCACG TGGGTGTTGA 15.3 0.0153 3T3 fibroblasts CGCCCCATCT (3) GTGCAGGAGG (2) GTGGCGCACG 73.6 0.0736 E15 cortex CCTGCCTCCC (3) CGCCCCATCT (3) GAAGCGTGGG GATGAGGAAG (5) GTGCAGGAGG (2) GTGGCGCACG TGGTGGCTGG 168.1 0.1681 P1 cortex CGCCCCATCT (3) GTCAGTCAAA GTGGCGCACG 27.2 0.0272 Hypothalamus ATAGCCAGGG CGCCCCATCT (3) GTCAGTCAAA GTGCAGGAGG (2) GTGGCGCACG TAAATATAAA TGGTGGCTGG 18 0.018 E12.5 retina AAGCTGCAGG (2) ACATACTGGG (3) ATGTCTTTAA (3) CAACAGCTGC CGCCCCATCT (3) GGTATGTTAT (5) GTGCAGGAGG (2) GTGGCGCACG TGGTGGCTGG 30.2 0.0302 E14.5 retina AAGCTGCAGG (2) ATGTCTTTAA (3) CGCCCCATCT (3) GATGAGGAAG (5) GTGCAGGAGG (2) GTGGCGCACG TGGTGGCTGG 58.2 0.0582 E16.5 retina AAGCTGCAGG (2) AATTAAAAAA ACATACTGGG (3) ATAGCCAGGG CGCCCCATCT (3) GATGAGGAAG (5) GGTATGTTAT (5) GTCAGTCAAA GTGCAGGAGG (2) GTGGCGCACG TAAATATAAA TCCAGCAGAA TGGGTGTTGA TGGTGGCTGG 72.3 0.0723 E18.5 retina AAGCTGCAGG (2) CAACAGCTGC GATGAGGAAG (5) GGTATGTTAT (5) GTGCAGGAGG (2) GTGGCGCACG TAAATATAAA TGGGTGTTGA 45.4 0.0454 P0.5 retina AAGCTGCAGG (2) CAGGTTTCAA (5) GATGAGGAAG (5) GGTATGTTAT (5) GTGGCGCACG 53.1 0.0531 P2.5 retina AAGCTGCAGG (2) CAGGTTTCAA (5) CGCCCCATCT (3) GGTATGTTAT (5) GTCAGTCAAA GTGCAGGAGG (2) GTGGCGCACG TGGTGGCTGG 42.3 0.0423 P4.5 retina AAAAGGAGAT (4) AAGCTGCAGG (2) ACATACTGGG (3) ATACGAAGTC (3) CCAGCTTAAC (3) CCTGCCTCCC (3) CGCCCCATCT (3) GGTATGTTAT (5) GTGCAGGAGG (2) GTGGCGCACG TGGTGGCTGG 55.6 0.0556 P6.5 retina AAAAGGAGAT (4) AAGCTGCAGG (2) CAACAGCTGC CCAGCTTAAC (3) GGTATGTTAT (5) GTCAGTCAAA GTGCAGGAGG (2) GTGGCGCACG TGGTGGCTGG 63.4 0.0634 P10.5 crx- retina AAGCTGCAGG (2) ATACGAAGTC (3) CCAGCTTAAC (3) CGCCCCATCT (3) GGTATGTTAT (5) GTGGCGCACG 26.1 0.0261 P10.5 crx+ retina AAAAGGAGAT (4) ATACGAAGTC (3) CCTGCCTCCC (3) CGCCCCATCT (3) GATGAGGAAG (5) GTCAGTCAAA GTGCAGGAGG (2) GTGGCGCACG TGGTGGCTGG 49.8 0.0498 Adult retinal AAGCTGCAGG (2) ATAGCCAGGG ATGTCTTTAA (3) CCAGCTTAAC (3) CGCCCCATCT (3) GATGAGGAAG (5) GGTATGTTAT (5) GTCAGTCAAA GTGCAGGAGG (2) GTGGCGCACG TAAATATAAA TGGTGGCTGG 57.8 0.0578 ONL AAGCTGCAGG (2) AATTAAAAAA GTCAGTCAAA GTGCAGGAGG (2) GTGGCGCACG GTTTTCTTAA TGGTGGCTGG 42 0.042