Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2756	Hmgn1	high mobility group nucleosomal binding domain 1	16	16 69.8 cM	15312
Gene Ontology	chromatin | DNA binding | DNA packaging | nucleus
Human Homolog	HMGN1[high-mobility group nucleosome binding domain 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 132 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACAGGCTCA (2) ACCACAGACA CCATTTTTTA (5) GCAGTCCATT GTGTGGCCCT (2) TAATAAAAAT TACACAAATA TACACAAATG (2) TTATAAAAAT (2) 58.6 0.0586 Cb medulloblastoma AACAGGCTCA (2) CCATTTTTTA (5) GCAAGAAGCC (3) GTGTGGCCCT (2) TAATAAAAAT TTAATAAAAA (2) TTATAAAAAT (2) 34.5 0.0345 P8 GC+1d culture ACCACAGACA CCATTTTTTA (5) GCAAGAAGCC (3) GCAGTCCATT GTGTGGCCCT (2) GTTTTTTTAA (2) TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) 45.4 0.0454 P8 GC+SHH+1d culture AACAGGCTCA (2) ACCACAGACA AGCTGGGCAG (2) CCATTTTTTA (5) GCAAGAAGCC (3) GTGTAAGAAG TAATAAAAAT TACACAAATG (2) 77.3 0.0773 3T3 fibroblasts AACACAATGT AGCTGGGCAG (2) CCATTTTTTA (5) 14 0.014 E15 cortex AGCTGGGCAG (2) GTGTGGCCCT (2) TAATAAAAAT 19.7 0.0197 P1 cortex GTGTGGCCCT (2) TAATAAAAAT TTCTAACAAA 22.6 0.0226 Hypothalamus GTGTAAGAAG GTGTGGCCCT (2) TAATAAAAAT TACACAAATA TACACAAATG (2) TGACTTCAAA TTCTAACAAA 25.2 0.0252 E12.5 retina ACCACAGACA CCATTTTTTA (5) TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) 32 0.032 E14.5 retina AACACAATGT CCATTTTTTA (5) TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) TTCTAACAAA 91.1 0.0911 E16.5 retina CCATTTTTTA (5) GCAGTCCATT TAATAAAAAT TACACAAATG (2) 61.5 0.0615 E18.5 retina ACCACAGACA CCATTTTTTA (5) TAATAAAAAT TACACAAATG (2) TTAATAAAAA (2) TTCTAACAAA 89 0.089 P0.5 retina ACCACAGACA CCATTTTTTA (5) GCAGTCCATT GTGTAAGAAG GTGTGGCCCT (2) GTTTTTTTAA (2) TAATAAAAAT TACACAAATG (2) 27.6 0.0276 P2.5 retina ACCACAGACA CCATTTTTTA (5) GCAGTCCATT GTGTGGCCCT (2) TAATAAAAAT TGACTTCAAA TTCTAACAAA 65.3 0.0653 P4.5 retina AACACAATGT ACCACAGACA CCATTTTTTA (5) GCAGTCCATT GTGTAAGAAG GTTTTTTTAA (2) TAATAAAAAT TTAATAAAAA (2) TTCTAACAAA 45.7 0.0457 P6.5 retina AACACAATGT CCATTTTTTA (5) GTGTAAGAAG GTTTTTTTAA (2) TAATAAAAAT TACACAAATG (2) TGACTTCAAA TTAATAAAAA (2) 58.5 0.0585 P10.5 crx- retina AACACAATGT AACAGGCTCA (2) ACCACAGACA GCAAGAAGCC (3) GCAGTCCATT GTGTAAGAAG TAATAAAAAT TACACAAATG (2) 29.8 0.0298 P10.5 crx+ retina AACACAATGT ACCACAGACA AGGGAAGAGG (2) GCAGTCCATT TAATAAAAAT TACACAAATG (2) 47.9 0.0479 Adult retinal ACCACAGACA AGGGAAGAGG (2) CCATTTTTTA (5) GTGTAAGAAG GTGTGGCCCT (2) GTTTTTTTAA (2) TAATAAAAAT TACACAAATA TGACTTCAAA 37.3 0.0373 ONL AACAGGCTCA (2) ACCACAGACA AGGGAAGAGG (2) GCAGTCCATT GTTTTTTTAA (2) TAATAAAAAT TACACAAATA 74.6 0.0746