Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2756	Hmgn1	high mobility group nucleosomal binding domain 1	16	16 69.8 cM	15312
Gene Ontology	chromatin | DNA binding | DNA packaging | nucleus
Human Homolog	HMGN1[high-mobility group nucleosome binding domain 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 132 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAATAAAAAT (10) 32.6 0.0326 P8 Cb GC CCATTTTTTA (6) 8.2 0.0082 P8 Cb GC GCAGTCCATT 6.5 0.0065 P8 Cb GC AACAGGCTCA (3) 3.3 0.0033 P8 Cb GC ACCACAGACA 1.6 0.0016 P8 Cb GC GTGTGGCCCT (4) 1.6 0.0016 P8 Cb GC TACACAAATA 1.6 0.0016 P8 Cb GC TACACAAATG (5) 1.6 0.0016 P8 Cb GC TTATAAAAAT (3) 1.6 0.0016 Cb medulloblastoma TAATAAAAAT (10) 9.2 0.0092 Cb medulloblastoma CCATTTTTTA (6) 6.9 0.0069 Cb medulloblastoma GTGTGGCCCT (4) 6.9 0.0069 Cb medulloblastoma TTATAAAAAT (3) 4.6 0.0046 Cb medulloblastoma AACAGGCTCA (3) 2.3 0.0023 Cb medulloblastoma GCAAGAAGCC (7) 2.3 0.0023 Cb medulloblastoma TTAATAAAAA (4) 2.3 0.0023 P8 GC+1d culture TAATAAAAAT (10) 30.8 0.0308 P8 GC+1d culture CCATTTTTTA (6) 5.7 0.0057 P8 GC+1d culture TACACAAATG (5) 2.3 0.0023 P8 GC+1d culture ACCACAGACA 1.1 0.0011 P8 GC+1d culture GCAAGAAGCC (7) 1.1 0.0011 P8 GC+1d culture GCAGTCCATT 1.1 0.0011 P8 GC+1d culture GTGTGGCCCT (4) 1.1 0.0011 P8 GC+1d culture GTTTTTTTAA (7) 1.1 0.0011 P8 GC+1d culture TTAATAAAAA (4) 1.1 0.0011 P8 GC+SHH+1d culture TAATAAAAAT (10) 60.9 0.0609 P8 GC+SHH+1d culture CCATTTTTTA (6) 5.9 0.0059 P8 GC+SHH+1d culture AACAGGCTCA (3) 2.3 0.0023 P8 GC+SHH+1d culture ACCACAGACA 2.3 0.0023 P8 GC+SHH+1d culture GTGTAAGAAG (4) 2.3 0.0023 P8 GC+SHH+1d culture AGCTGGGCAG (3) 1.2 0.0012 P8 GC+SHH+1d culture GCAAGAAGCC (7) 1.2 0.0012 P8 GC+SHH+1d culture TACACAAATG (5) 1.2 0.0012 3T3 fibroblasts AACACAATGT (2) 7 0.007 3T3 fibroblasts AGCTGGGCAG (3) 3.5 0.0035 3T3 fibroblasts CCATTTTTTA (6) 3.5 0.0035 E15 cortex AGCTGGGCAG (3) 9.9 0.0099 E15 cortex GTGTGGCCCT (4) 4.9 0.0049 E15 cortex TAATAAAAAT (10) 4.9 0.0049 P1 cortex GTGTGGCCCT (4) 13.6 0.0136 P1 cortex TAATAAAAAT (10) 4.5 0.0045 P1 cortex TTCTAACAAA (2) 4.5 0.0045 Hypothalamus TAATAAAAAT (10) 7.2 0.0072 Hypothalamus TGACTTCAAA (2) 5.4 0.0054 Hypothalamus GTGTGGCCCT (4) 3.6 0.0036 Hypothalamus TACACAAATG (5) 3.6 0.0036 Hypothalamus GTGTAAGAAG (4) 1.8 0.0018 Hypothalamus TACACAAATA 1.8 0.0018 Hypothalamus TTCTAACAAA (2) 1.8 0.0018 E12.5 retina TAATAAAAAT (10) 18.8 0.0188 E12.5 retina ACCACAGACA 5.6 0.0056 E12.5 retina CCATTTTTTA (6) 3.8 0.0038 E12.5 retina TACACAAATG (5) 1.9 0.0019 E12.5 retina TTAATAAAAA (4) 1.9 0.0019 E14.5 retina TAATAAAAAT (10) 72.9 0.0729 E14.5 retina CCATTTTTTA (6) 7.3 0.0073 E14.5 retina AACACAATGT (2) 5.5 0.0055 E14.5 retina TACACAAATG (5) 1.8 0.0018 E14.5 retina TTAATAAAAA (4) 1.8 0.0018 E14.5 retina TTCTAACAAA (2) 1.8 0.0018 E16.5 retina TAATAAAAAT (10) 48.9 0.0489 E16.5 retina TACACAAATG (5) 7.2 0.0072 E16.5 retina CCATTTTTTA (6) 3.6 0.0036 E16.5 retina GCAGTCCATT 1.8 0.0018 E18.5 retina TAATAAAAAT (10) 70.9 0.0709 E18.5 retina TTAATAAAAA (4) 5.5 0.0055 E18.5 retina CCATTTTTTA (6) 3.6 0.0036 E18.5 retina TACACAAATG (5) 3.6 0.0036 E18.5 retina TTCTAACAAA (2) 3.6 0.0036 E18.5 retina ACCACAGACA 1.8 0.0018 P0.5 retina CCATTTTTTA (6) 5.9 0.0059 P0.5 retina TAATAAAAAT (10) 5.9 0.0059 P0.5 retina ACCACAGACA 3.9 0.0039 P0.5 retina GCAGTCCATT 3.9 0.0039 P0.5 retina GTGTAAGAAG (4) 2 0.002 P0.5 retina GTGTGGCCCT (4) 2 0.002 P0.5 retina GTTTTTTTAA (7) 2 0.002 P0.5 retina TACACAAATG (5) 2 0.002 P2.5 retina TAATAAAAAT (10) 49.3 0.0493 P2.5 retina CCATTTTTTA (6) 5.3 0.0053 P2.5 retina GCAGTCCATT 3.5 0.0035 P2.5 retina ACCACAGACA 1.8 0.0018 P2.5 retina GTGTGGCCCT (4) 1.8 0.0018 P2.5 retina TGACTTCAAA (2) 1.8 0.0018 P2.5 retina TTCTAACAAA (2) 1.8 0.0018 P4.5 retina TAATAAAAAT (10) 25.8 0.0258 P4.5 retina GTGTAAGAAG (4) 5.9 0.0059 P4.5 retina AACACAATGT (2) 2 0.002 P4.5 retina ACCACAGACA 2 0.002 P4.5 retina CCATTTTTTA (6) 2 0.002 P4.5 retina GCAGTCCATT 2 0.002 P4.5 retina GTTTTTTTAA (7) 2 0.002 P4.5 retina TTAATAAAAA (4) 2 0.002 P4.5 retina TTCTAACAAA (2) 2 0.002 P6.5 retina TAATAAAAAT (10) 41.7 0.0417 P6.5 retina GTGTAAGAAG (4) 5 0.005 P6.5 retina CCATTTTTTA (6) 3.3 0.0033 P6.5 retina AACACAATGT (2) 1.7 0.0017 P6.5 retina GTTTTTTTAA (7) 1.7 0.0017 P6.5 retina TACACAAATG (5) 1.7 0.0017 P6.5 retina TGACTTCAAA (2) 1.7 0.0017 P6.5 retina TTAATAAAAA (4) 1.7 0.0017 P10.5 crx- retina AACACAATGT (2) 7.4 0.0074 P10.5 crx- retina TAATAAAAAT (10) 5.6 0.0056 P10.5 crx- retina ACCACAGACA 3.7 0.0037 P10.5 crx- retina GTGTAAGAAG (4) 3.7 0.0037 P10.5 crx- retina TACACAAATG (5) 3.7 0.0037 P10.5 crx- retina AACAGGCTCA (3) 1.9 0.0019 P10.5 crx- retina GCAAGAAGCC (7) 1.9 0.0019 P10.5 crx- retina GCAGTCCATT 1.9 0.0019 P10.5 crx+ retina TAATAAAAAT (10) 28.8 0.0288 P10.5 crx+ retina ACCACAGACA 9.6 0.0096 P10.5 crx+ retina TACACAAATG (5) 3.8 0.0038 P10.5 crx+ retina AACACAATGT (2) 1.9 0.0019 P10.5 crx+ retina AGGGAAGAGG (6) 1.9 0.0019 P10.5 crx+ retina GCAGTCCATT 1.9 0.0019 Adult retinal TAATAAAAAT (10) 14.8 0.0148 Adult retinal ACCACAGACA 7.4 0.0074 Adult retinal GTGTGGCCCT (4) 3.7 0.0037 Adult retinal AGGGAAGAGG (6) 1.9 0.0019 Adult retinal CCATTTTTTA (6) 1.9 0.0019 Adult retinal GTGTAAGAAG (4) 1.9 0.0019 Adult retinal GTTTTTTTAA (7) 1.9 0.0019 Adult retinal TACACAAATA 1.9 0.0019 Adult retinal TGACTTCAAA (2) 1.9 0.0019 ONL TAATAAAAAT (10) 59.4 0.0594 ONL ACCACAGACA 5.7 0.0057 ONL AACAGGCTCA (3) 1.9 0.0019 ONL AGGGAAGAGG (6) 1.9 0.0019 ONL GCAGTCCATT 1.9 0.0019 ONL GTTTTTTTAA (7) 1.9 0.0019 ONL TACACAAATA 1.9 0.0019