Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.303231	Cxcl12	chemokine (C-X-C motif) ligand 12	6	6 53.0 cM	20315
Gene Ontology	brain development | chemokine activity | chemotaxis | cytokine activity | extracellular | extracellular space | germ-cell development | germ-cell migration | growth factor activity | immune response | positive regulation of cell migration | regulation of cell migration | T-cell proliferation
Human Homolog	CXCL12[chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAACAATTAG CTGTAAAAAA (2) CTGTAAACCT CTTCATCTGA (2) GACGCCAGGG GCTCATTCAT 22.8 0.0228 Cb medulloblastoma CTGTAAAAAA (2) GACGCCAGGG TGTACACACA 11.5 0.0115 P8 GC+1d culture AAACAATTAG AAGCCACAGT AAGCCACCGT ACCCTGAAAA CTGTAAAAAA (2) CTGTAAACCT GACGCCAGGG GCTCATTCAT 14.6 0.0146 P8 GC+SHH+1d culture AAACAATTAG AAGCCACAGT ACCCTGAAAA CTGTAAAAAA (2) CTGTAAACCT CTTCATCTGA (2) GACGCCAGGG GCTCATTCAT 31.7 0.0317 3T3 fibroblasts AAACAATTAG AAGCCACAGT CTGTAAAAAA (2) CTGTAAACCT GACGCCAGGG TCAGCTGCTT 49 0.049 E15 cortex CTTCATCTGA (2) GACGCCAGGG 9.8 0.0098 P1 cortex GACGCCAGGG TGTACACACA 18.2 0.0182 Hypothalamus AAGCCACCGT CTGTAAAAAA (2) CTGTAAACCT 5.4 0.0054 E12.5 retina CTTCATCTGA (2) GACGCCAGGG GCTCATTCAT TCAGCTGCTT 15.1 0.0151 E14.5 retina AGGGCACAGG CTTCATCTGA (2) GACGCCAGGG 10.9 0.0109 E16.5 retina CTTCATCTGA (2) GACGCCAGGG 9 0.009 E18.5 retina CTTCATCTGA (2) GACGCCAGGG TGTACACACA 18.2 0.0182 P0.5 retina ACCCTGAAAA CTTCATCTGA (2) GAAATGCCTG GACGCCAGGG TCAGCTGCTT 19.8 0.0198 P2.5 retina AGGGCACAGG CTTCATCTGA (2) GACGCCAGGG 21.2 0.0212 P4.5 retina CTGTAAAAAA (2) CTTCATCTGA (2) GAAATGCCTG GACGCCAGGG 17.9 0.0179 P6.5 retina CTTCATCTGA (2) GACGCCAGGG TGTACACACA 11.6 0.0116 P10.5 crx- retina AAGCCACCGT CTTCATCTGA (2) GACGCCAGGG GCTCATTCAT 18.6 0.0186 P10.5 crx+ retina CTTCATCTGA (2) GACGCCAGGG GCTCATTCAT TGTACACACA 7.6 0.0076 Adult retinal CTTCATCTGA (2) GACGCCAGGG 5.6 0.0056 ONL AAGCCACAGT AGGGCACAGG GACGCCAGGG TGTACACACA 7.6 0.0076