Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.305152	Apoe	apolipoprotein E	7	7 4.0 cM	11816
Gene Ontology	extracellular | extracellular space | heparin binding | lipid binding | lipid transport | lipid transporter activity | lipoprotein metabolism
Human Homolog	APOE[apolipoprotein E] | APOE[apolipoprotein E]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 294 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATCGCCAGT CTAGGCGCTG (2) CTGGCAGAGC (2) CTGGGCCAGA CTGGGCCCAG (2) CTGGGGAAGA (2) GAAGGAACAA GAGGAAGTGC (2) GAGGAGGGTG GAGGAGGTGC (2) GAGGAGGTGG (2) GAGGATCTAC (2) GCCTCTGGTG (2) GGAGGGAGGG (2) GGGAGATGCT GGGGAGGGGC (2) TATCGCCAGT TGCTCACGCA TTGGGCCAGA (2) 138.7 0.1387 Cb medulloblastoma CATCGCCAGT CCTGGGCAGA (3) CTGGGCCCAG (2) GAAGGAACAA GAGGAAGTGC (2) GAGGAGGGTG GAGGAGGTGC (2) GAGGATCTAC (2) GCCAGAGCAC (4) GCCTCTGGTG (2) GGGAGATGCT GTGTGACATT TTGGGCCAGA (2) 168.7 0.1687 P8 GC+1d culture AGGGAAAGAT (2) CATCGCCAGT CTAGGCGCTG (2) CTGGCAGAGC (2) CTGGGCAGAC (2) CTGGGCCAGA CTGGGCCAGG CTGGGCCCAG (2) GAAGGAACAA GAAGGAAGTG GAGGAAGTGC (2) GAGGAGGGGA (2) GAGGAGGGTG GAGGAGGTGC (2) GCCAGAGCAC (4) GCCTCTGGTG (2) GGGGAGGGGC (2) TCGGCTCCGA TGCTGCATCA TGGCCCTGGT TTGGGCCAGA (2) 106.8 0.1068 P8 GC+SHH+1d culture AGCTCCCAAG CATCGCCAGT CTGGCAGAGC (2) CTGGGCAGAC (2) CTGGGCCCAG (2) GAAGGAACAA GAAGGAAGTG GAGGAGGGTG GAGGAGGTGC (2) GCCTCTGGTG (2) GGAGGGAGGG (2) TAACACAAAA TGCTCACGCA TTGGGCCAGA (2) 112.5 0.1125 3T3 fibroblasts CTGGCAGAGC (2) CTGGGCCCAG (2) CTTGGGCAGA GAAGGAACAA GAGGAAGTGC (2) GAGGAGGGTG GCCAGAGCAC (4) GCCTCTGGTG (2) GGCCGCGACA TTGGGCCAGA (2) 227.7 0.2277 E15 cortex AGCTCCCAAG CATCGCCAGT CTGGGCCAGA GAGGAGGGTG GGCCGCGACA TAACACAAAA TTGGGCCAGA (2) 143.3 0.1433 P1 cortex CATCGCCAGG CATCGCCAGT CTGGGCCCAG (2) GAAGGAACAA GCCTCTGGTG (2) TGGCCCTGGT TTGGGCCAGA (2) 149.9 0.1499 Hypothalamus ACCCAGCAAA AGCTCCCAAG CATCGCCAGT CTGGGCCAAA CTGGGCCAGA CTGGGCCCAG (2) GAAGGAACAA GAAGGAAGTG GAGGAGGGTG GAGGAGGTGC (2) GAGGAGGTGG (2) GCCTCTGGTG (2) GGCACTCTCA TCGGCTCCGA TCTTCCACTA TGCTCACGCA TGGCCCTGGT TTGGGCCAGA (2) 219.1 0.2191 E12.5 retina AGGAAGGGGG (2) CATCGCCAGG CATCGCCAGT CTGGGCCCAG (2) GAAATGTGCC (4) GAAGGAACAA GAGGAGGGGA (2) GAGGAGGGTG GCCTCTGGTG (2) GGCACTCTCA GGGAGGGGGC (2) TCGGCTCCGA TGCTCACGCA TGGCCCTGGT TTGGGCCAGA (2) 133.5 0.1335 E14.5 retina CATCGCCAGT CTGGGCCCAG (2) GAAGGAACAA GAGGAGGGTG GAGGAGGTGG (2) GCCTCTGGTG (2) GGGAGATGCT GGGGAGGGGC (2) TAACACAAAA 61.9 0.0619 E16.5 retina AGCTCCCAAG CATCGCCAGT CCTGGGCCAG (3) CTAGGCGCTG (2) CTGGCAGAGC (2) CTGGGCCCAG (2) GAAGGAACAA GAGGAAGTGC (2) GAGGAGGGTG GAGGAGGTGG (2) GCCTCTGGTG (2) TCGGCTCCGA TGCTCACGCA TGCTGCATCA TTGGGCCAGA (2) 90.3 0.0903 E18.5 retina AGGAAGGGGG (2) CATCGCCAGT CTGGGCCAGA CTGGGCCAGG CTGGGCCCAG (2) GAAGGAACAA GAGGAAGTGC (2) GAGGAGGGTG GCCTCTGGTG (2) TTGGGCCAGA (2) 103.6 0.1036 P0.5 retina AGGGAAAGAT (2) CATCGCCAGT CTGGGCCCAG (2) CTGGGGAAGA (2) GAAGGAACAA GAGGAAGTGC (2) GAGGAGGGTG GCCTCTGGTG (2) GGAGGGAGGG (2) GTGTGACATT TGCTCACGCA TGGCCTTTTT TTGGGCCAGA (2) 131.7 0.1317 P2.5 retina ACCCAGCAAA AGGAAGGGGG (2) CATCGCCAGT CCTGGGCCAG (3) CTGGCAGAGC (2) CTGGGCCAAA CTGGGCCAGG CTGGGCCCAG (2) GAAGGAACAA GAGGAGGGGA (2) GAGGAGGGGC (3) GAGGAGGTGC (2) GCCAGAGCAC (4) GCCGTCGTGT (2) GCCTCTGGTG (2) GGAGGGAGGG (2) GGCACTCTCA GGGAGGGGGC (2) GGGGAGGGGC (2) GTGTGACATT TGCTCACGCA TTGGGCCAGA (2) 143.1 0.1431 P4.5 retina AGGAAGGGGG (2) CATCGCCAGT CTAGGCGCTG (2) CTGGGCCCAG (2) GAAATGTGCC (4) GAAGGAACAA GCCGTCGTGT (2) GCCTCTGGTG (2) GGAGGGAGGG (2) GGGAGATGCT GGGAGGGGGC (2) TATCGCCAGT TGCTGCATCA TTGGGCCAGA (2) 123 0.123 P6.5 retina ACCCAGCAAA CATCGCCAGT CCTGGGCCAG (3) CTGGCAGAGC (2) CTGGGCCAAA CTGGGCCAGA CTGGGCCCAG (2) GAAATGTGCC (4) GAAGGAACAA GAGGAAGTGC (2) GAGGAGGGGC (3) GCCAGAGCAC (4) GCCTCTGGTG (2) GGAGGGAGGG (2) GGCACTCTCA GGGAGATGCT TCGGCTCCGA TGCTCACGCA TTGGGCCAGA (2) 160.3 0.1603 P10.5 crx- retina ACCCAGCAAA AGGAAGGGGG (2) AGGGAAAGAT (2) CATCGCCAGG CATCGCCAGT CCTGGGCAGA (3) CCTGGGCCAG (3) CTGGCAGAGC (2) CTGGGCCAGA CTGGGCCCAG (2) GAAATGTGCC (4) GAAGGAACAA GAAGGAAGTG GAGGAGGGTG GCCTCTGGTG (2) GGAGGGAGGG (2) GTGTGACATT TCGGCTCCGA TGCTCACGCA TTGGGCCAGA (2) 182.5 0.1825 P10.5 crx+ retina AGGAAGGGGG (2) CATCGCCAGT CCTGGGCCAG (3) CTGGCAGAGC (2) CTGGGCCCAG (2) CTTGGGCAGA GAAATGTGCC (4) GAAGGAACAA GAGGAGGGGC (3) GCCAGAGCAC (4) GCCGTCGTGT (2) GCCTCTGGTG (2) GGGAGATGCT GGGGAGGGGC (2) TGGCCTTTTT TTGGGCCAGA (2) 176.7 0.1767 Adult retinal ACATTCAACT AGCTCCCAAG ATGAACACTG (9) CATCGCCAGG CATCGCCAGT CCTGGGCAGA (3) CTGGCAGAGC (2) CTGGGCCAGG CTGGGCCCAG (2) CTGGGGAAGA (2) GAAGGAACAA GAGGAGGGTG GAGGAGGTGC (2) GAGGAGGTGG (2) GCCTCTGGTG (2) GGCACTCTCA TCGGCTCCGA TGCTCACGCA TTGGGCCAGA (2) 165.4 0.1654 ONL ACATTCAACT ATGAACACTG (9) CATCGCCAGT CTGGGCCAGA CTTGGGCAGA GAAATGTGCC (4) GAAGGAAGTG GCCTCTGGTG (2) GGAGGGAGGG (2) GGCACTCTCA GGGAGGGGGC (2) GTGTGACATT TTGGGCCAGA (2) 74.5 0.0745