Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.305152	Apoe	apolipoprotein E	7	7 4.0 cM	11816
Gene Ontology	extracellular | extracellular space | heparin binding | lipid binding | lipid transport | lipid transporter activity | lipoprotein metabolism
Human Homolog	APOE[apolipoprotein E] | APOE[apolipoprotein E]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 94 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATCGCCAGT 22.8 0.0228 P8 Cb GC GAGGATCTAC (2) 6.5 0.0065 P8 Cb GC CTGGGCCAGA 3.3 0.0033 P8 Cb GC GAGGAGGTGC (2) 3.3 0.0033 P8 Cb GC TATCGCCAGT 3.3 0.0033 P8 Cb GC TGCTCACGCA 3.3 0.0033 P8 Cb GC GAGGAGGTGG (2) 1.6 0.0016 Cb medulloblastoma CATCGCCAGT 50.9 0.0509 Cb medulloblastoma GAGGATCTAC (2) 6.9 0.0069 Cb medulloblastoma GAGGAGGTGC (2) 4.6 0.0046 P8 GC+1d culture CATCGCCAGT 17.1 0.0171 P8 GC+1d culture CTGGGCCAGG 2.3 0.0023 P8 GC+1d culture CTGGGCCAGA 1.1 0.0011 P8 GC+1d culture GAGGAGGTGC (2) 1.1 0.0011 P8 GC+1d culture TCGGCTCCGA 1.1 0.0011 P8 GC+1d culture TGCTGCATCA 1.1 0.0011 P8 GC+SHH+1d culture CATCGCCAGT 14.1 0.0141 P8 GC+SHH+1d culture GAGGAGGTGC (2) 1.2 0.0012 P8 GC+SHH+1d culture TGCTCACGCA 1.2 0.0012 3T3 fibroblasts CTTGGGCAGA 3.5 0.0035 E15 cortex CATCGCCAGT 4.9 0.0049 E15 cortex CTGGGCCAGA 4.9 0.0049 P1 cortex CATCGCCAGT 18.2 0.0182 P1 cortex CATCGCCAGG 4.5 0.0045 Hypothalamus CATCGCCAGT 72.4 0.0724 Hypothalamus GAGGAGGTGC (2) 12.7 0.0127 Hypothalamus TCGGCTCCGA 10.9 0.0109 Hypothalamus TGCTCACGCA 9.1 0.0091 Hypothalamus CTGGGCCAGA 5.4 0.0054 Hypothalamus TCTTCCACTA 5.4 0.0054 Hypothalamus ACCCAGCAAA 1.8 0.0018 Hypothalamus CTGGGCCAAA 1.8 0.0018 Hypothalamus GAGGAGGTGG (2) 1.8 0.0018 E12.5 retina CATCGCCAGT 5.6 0.0056 E12.5 retina CATCGCCAGG 3.8 0.0038 E12.5 retina GGGAGGGGGC (2) 1.9 0.0019 E12.5 retina TCGGCTCCGA 1.9 0.0019 E12.5 retina TGCTCACGCA 1.9 0.0019 E14.5 retina CATCGCCAGT 1.8 0.0018 E14.5 retina GAGGAGGTGG (2) 1.8 0.0018 E16.5 retina CATCGCCAGT 5.4 0.0054 E16.5 retina GAGGAGGTGG (2) 1.8 0.0018 E16.5 retina TCGGCTCCGA 1.8 0.0018 E16.5 retina TGCTCACGCA 1.8 0.0018 E16.5 retina TGCTGCATCA 1.8 0.0018 E18.5 retina CTGGGCCAGG 3.6 0.0036 E18.5 retina CATCGCCAGT 1.8 0.0018 E18.5 retina CTGGGCCAGA 1.8 0.0018 P0.5 retina CATCGCCAGT 5.9 0.0059 P0.5 retina TGCTCACGCA 2 0.002 P2.5 retina CATCGCCAGT 5.3 0.0053 P2.5 retina ACCCAGCAAA 1.8 0.0018 P2.5 retina CTGGGCCAAA 1.8 0.0018 P2.5 retina CTGGGCCAGG 1.8 0.0018 P2.5 retina GAGGAGGGGC (3) 1.8 0.0018 P2.5 retina GAGGAGGTGC (2) 1.8 0.0018 P2.5 retina GCCGTCGTGT (2) 1.8 0.0018 P2.5 retina GGGAGGGGGC (2) 1.8 0.0018 P2.5 retina TGCTCACGCA 1.8 0.0018 P4.5 retina CATCGCCAGT 27.7 0.0277 P4.5 retina GCCGTCGTGT (2) 2 0.002 P4.5 retina GGGAGGGGGC (2) 2 0.002 P4.5 retina TATCGCCAGT 2 0.002 P4.5 retina TGCTGCATCA 2 0.002 P6.5 retina CATCGCCAGT 33.3 0.0333 P6.5 retina TCGGCTCCGA 3.3 0.0033 P6.5 retina TGCTCACGCA 3.3 0.0033 P6.5 retina ACCCAGCAAA 1.7 0.0017 P6.5 retina CTGGGCCAAA 1.7 0.0017 P6.5 retina CTGGGCCAGA 1.7 0.0017 P6.5 retina GAGGAGGGGC (3) 1.7 0.0017 P10.5 crx- retina CATCGCCAGT 59.4 0.0594 P10.5 crx- retina TGCTCACGCA 5.6 0.0056 P10.5 crx- retina CATCGCCAGG 3.7 0.0037 P10.5 crx- retina ACCCAGCAAA 1.9 0.0019 P10.5 crx- retina CTGGGCCAGA 1.9 0.0019 P10.5 crx- retina TCGGCTCCGA 1.9 0.0019 P10.5 crx+ retina CATCGCCAGT 30.8 0.0308 P10.5 crx+ retina CTTGGGCAGA 1.9 0.0019 P10.5 crx+ retina GAGGAGGGGC (3) 1.9 0.0019 P10.5 crx+ retina GCCGTCGTGT (2) 1.9 0.0019 Adult retinal CATCGCCAGT 42.6 0.0426 Adult retinal TCGGCTCCGA 5.6 0.0056 Adult retinal ACATTCAACT 3.7 0.0037 Adult retinal CATCGCCAGG 1.9 0.0019 Adult retinal CTGGGCCAGG 1.9 0.0019 Adult retinal GAGGAGGTGC (2) 1.9 0.0019 Adult retinal GAGGAGGTGG (2) 1.9 0.0019 Adult retinal TGCTCACGCA 1.9 0.0019 ONL CATCGCCAGT 5.7 0.0057 ONL GGGAGGGGGC (2) 3.8 0.0038 ONL ACATTCAACT 1.9 0.0019 ONL CTGGGCCAGA 1.9 0.0019 ONL CTTGGGCAGA 1.9 0.0019