Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4141	Vldlr	very low density lipoprotein receptor	19	19 20.0 cM	22359
Gene Ontology	calcium ion binding | cholesterol metabolism | coated pit | endocytosis | extracellular space | integral to membrane | lipid transport | lipid transporter activity | membrane | receptor activity
Human Homolog	VLDLR[very low density lipoprotein receptor]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGAAAAAAA (5) TTGTGGTGAC (2) 3.2 0.0032 Cb medulloblastoma GGGAAAAAAA (5) TTGGAACACA TTGTGGTGAC (2) 111 0.111 P8 GC+1d culture GATCCTGCAG (2) GGGAAAAAAA (5) TTGTGGTGAC (2) 11.3 0.0113 P8 GC+SHH+1d culture GGGAAAAAAA (5) TTGTGGTGAC (2) 7.1 0.0071 3T3 fibroblasts AACTTTGACA (4) 3.5 0.0035 E15 cortex GATCCTGCAG (2) TTGTGGTGAC (2) 9.8 0.0098 P1 cortex GATCCTGCAG (2) GGGAAAAAAA (5) TTGTGGTGAC (2) 13.5 0.0135 Hypothalamus GGGAAAAAAA (5) TTGGAACACA TTGTGGTGAC (2) 52.5 0.0525 E12.5 retina TTGTGGTGAC (2) 3.8 0.0038 E14.5 retina AACTTTGACA (4) GGGAAAAAAA (5) TTGGAACACA TTGGCCATCA (2) TTGTGGTGAC (2) 14.5 0.0145 E16.5 retina AACTTTGACA (4) ATTACGCCAA GATCCTGCAG (2) GGGAAAAAAA (5) TTGGAACACA TTGTGGTGAC (2) 28.9 0.0289 E18.5 retina GGGAAAAAAA (5) TAGGTACAGG TTGGAACACA TTGTGGTGAC (2) 21.9 0.0219 P0.5 retina AACTTTGACA (4) ATTACGCCAA GGGAAAAAAA (5) TTGGCCATCA (2) TTGTGGTGAC (2) 19.7 0.0197 P2.5 retina GATCCTGCAG (2) GGGAAAAAAA (5) TTGGAACACA TTGTGGTGAC (2) 24.7 0.0247 P4.5 retina GGGAAAAAAA (5) TAGGTACAGG TTGGAACACA TTGTGGTGAC (2) 35.7 0.0357 P6.5 retina GGGAAAAAAA (5) TAGGTACAGG TTGGAACACA TTGTGGTGAC (2) 35.1 0.0351 P10.5 crx- retina AACTTTGACA (4) GGGAAAAAAA (5) TTGGAACACA TTGGCCATCA (2) TTGTGGTGAC (2) 26.1 0.0261 P10.5 crx+ retina GGGAAAAAAA (5) TTGGAACACA TTGTGGTGAC (2) 55.8 0.0558 Adult retinal AACTTTGACA (4) ATTACGCCAA GATCCTGCAG (2) GGGAAAAAAA (5) TTGGAACACA TTGTGGTGAC (2) 61.2 0.0612 ONL AACTTTGACA (4) GATCCTGCAG (2) GGGAAAAAAA (5) TTGGAACACA TTGTGGTGAC (2) 43.9 0.0439