Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.641	Atf4	activating transcription factor 4	15	15 43.3 cM	11911
Gene Ontology	DNA binding | gluconeogenesis | nucleus | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription, DNA-dependent | specific RNA polymerase II transcription factor activity | transcription factor complex | transcriptional activator activity
Human Homolog	ATF4[activating transcription factor 4 (tax-responsive enhancer element B67)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACCAAGAGTC (2) CTCTTGTTTC CTTTTTTTCT (2) GCGTATTAGA GTGGCCGCAA TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 44.1 0.0441 Cb medulloblastoma ACCAAGAGTC (2) CTCTTGTTTC CTGCTCCGTT CTTTTTTTCT (2) GCGCTCTTCA TGATGCCAAT (2) TGTAAAGGAG 29.9 0.0299 P8 GC+1d culture ACCAAGAGTC (2) CTCTTGTTTC GTAGAGAACT GTGGCCGCAA TGATGCCAAT (2) TGTAAAGAAG TGTAAAGGAG TTTTTAAAAT 47.9 0.0479 P8 GC+SHH+1d culture ACCAAGAGTC (2) CTCTTGTTTC CTGCTCCGTT CTTTTTTTCT (2) TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 31.7 0.0317 3T3 fibroblasts AGCGGGGGCA (2) GTGGCCGCAA TGTAAAGAAG TGTAAAGGAG 38.5 0.0385 E15 cortex TGATGCCAAT (2) TGTAAAGGAG 9.8 0.0098 P1 cortex GTGGCCGCAA TGTAAAGAAG TGTAAAGGAG 18.1 0.0181 Hypothalamus CTGCTCCGTT CTTTTTTTCT (2) TGTAAAGAAG TGTAAAGGAG 36.2 0.0362 E12.5 retina ACCAAGAGTC (2) CCAGATGAAG CTGCTCCGTT TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 24.6 0.0246 E14.5 retina ACCAAGAGTC (2) CCAGATGAAG CTGCTCCGTT TGATGCCAAT (2) 9 0.009 E16.5 retina CCAGATGAAG CTCTTGTTTC CTGCTCCGTT CTTTTTTTCT (2) GTAGAGAACT GTGGCCGCAA TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 23.4 0.0234 E18.5 retina CCAGATGAAG CTGCTCCGTT GTAGAGAACT GTGGCCGCAA TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 21.8 0.0218 P0.5 retina CTGCTCCGTT TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 19.6 0.0196 P2.5 retina ACCAAGAGTC (2) CTGCTCCGTT TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 17.7 0.0177 P4.5 retina CTGCTCCGTT CTTTTTTTCT (2) GTAGAGAACT GTGGCCGCAA TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 27.8 0.0278 P6.5 retina CCAGATGAAG CTCTTGTTTC CTGCTCCGTT CTTTTTTTCT (2) GTAGAGAACT GTGGCCGCAA TGATCTTTTT TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 51.7 0.0517 P10.5 crx- retina ACCAAGAGTC (2) CTGCTCCGTT CTTTTTTTCT (2) TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 55.7 0.0557 P10.5 crx+ retina ACCAAGAGTC (2) CTGCTCCGTT GCGCTCTTCA GTGGCCGCAA TGATGCCAAT (2) TGTAAAGGAG TTTTTAAAAT 42.3 0.0423 Adult retinal ACCAAGAGTC (2) CTGCTCCGTT TGATCTTTTT TGATGCCAAT (2) TGTAAAGGAG 31.6 0.0316 ONL AGCGGGGGCA (2) CTCTTGTTTC CTGCTCCGTT GTAGAGAACT TGTAAAGGAG TTTTTAAAAT 26.7 0.0267