Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41746	Rpo2tc1	RNA polymerase II transcriptional coactivator	15		20024
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription | transcription coactivator activity
Human Homolog	PC4[activated RNA polymerase II transcription cofactor 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 62 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATCTAGTGA GAACAATGGA (2) TAACTCTTTA (2) TTCCAGATTG (2) TTGTCATCTC (2) 26 0.026 Cb medulloblastoma CATCTAGTGA 2.3 0.0023 P8 GC+1d culture CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTGTCATCTC (2) 29.8 0.0298 P8 GC+SHH+1d culture GAACAATGGA (2) TAACTCTTTA (2) TTCCAGATTG (2) TTGTCATCTC (2) 26.9 0.0269 3T3 fibroblasts CATCTAGTGA GAACAATGGA (2) 7 0.007 E15 cortex GAACAATGGA (2) 19.8 0.0198 P1 cortex GAACAATGGA (2) 4.5 0.0045 Hypothalamus CATCTAGTGA GAACAATGGA (2) TGGAAAGCTT (2) TTCCAGATTG (2) TTGTCATCTC (2) TTTACATTAT 36.2 0.0362 E12.5 retina GAACAATGGA (2) TTGTCATCTC (2) 43.2 0.0432 E14.5 retina CATCTAGTGA GAACAATGGA (2) 16.4 0.0164 E16.5 retina CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTGTCATCTC (2) 56.1 0.0561 E18.5 retina CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTGTCATCTC (2) 25.5 0.0255 P0.5 retina CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTGTCATCTC (2) 33.4 0.0334 P2.5 retina GAACAATGGA (2) TAACTCTTTA (2) TTCCAGATTG (2) 14.1 0.0141 P4.5 retina CATCTAGTGA GAACAATGGA (2) 13.9 0.0139 P6.5 retina CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTGTCATCTC (2) TTTACATTAT 23.4 0.0234 P10.5 crx- retina CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTTACATTAT 35.4 0.0354 P10.5 crx+ retina CATCTAGTGA GAACAATGGA (2) TTCCAGATTG (2) TTGTCATCTC (2) 19.2 0.0192 Adult retinal CATCTAGTGA GAACAATGGA (2) TGGAAAGCTT (2) 9.4 0.0094 ONL GAACAATGGA (2) 3.8 0.0038