Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.12145	Rbbp4	retinoblastoma binding protein 4	4	4	19646
Gene Ontology	cell cycle | chromatin remodeling | DNA repair | DNA replication | nucleus | NuRD complex | protein binding | regulation of transcription, DNA-dependent
Human Homolog	RBBP4[retinoblastoma binding protein 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 132 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC ACTAACTGTG 27.7 0.0277 P8 Cb GC GTGGTTCACA (32) 14.7 0.0147 P8 Cb GC GAGAGTAACA (4) 4.9 0.0049 P8 Cb GC AATATGGATG (6) 3.3 0.0033 P8 Cb GC CAAGTGTGGC (4) 1.6 0.0016 P8 Cb GC CTGGTGGGTT 1.6 0.0016 P8 Cb GC GCTGACAAGG (3) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GTGGTTCACA (32) 11.6 0.0116 Cb medulloblastoma AATATGGATG (6) 9.2 0.0092 Cb medulloblastoma ACTAACTGTG 9.2 0.0092 Cb medulloblastoma GAGAGTAACA (4) 6.9 0.0069 Cb medulloblastoma AAACAAAAAA (12) 2.3 0.0023 Cb medulloblastoma CTGGTGGGTT 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture ACTAACTGTG 21.7 0.0217 P8 GC+1d culture GTGGTTCACA (32) 18.3 0.0183 P8 GC+1d culture AATATGGATG (6) 8 0.008 P8 GC+1d culture GAGAGTAACA (4) 8 0.008 P8 GC+1d culture CAAGTGTGGC (4) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GTGGTTCACA (32) 31.6 0.0316 P8 GC+SHH+1d culture ACTAACTGTG 28.1 0.0281 P8 GC+SHH+1d culture GAGAGTAACA (4) 10.5 0.0105 P8 GC+SHH+1d culture AATATGGATG (6) 5.9 0.0059 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GAGAGTAACA (4) 24.5 0.0245 3T3 fibroblasts GTGGTTCACA (32) 17.5 0.0175 3T3 fibroblasts AAGGGTAGCT (2) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GCTGACAAGG (3) 9.9 0.0099 E15 cortex GTGGTTCACA (32) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GAGAGTAACA (4) 36.4 0.0364 P1 cortex GTGGTTCACA (32) 27.3 0.0273 P1 cortex AATATGGATG (6) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GTGGTTCACA (32) 12.7 0.0127 Hypothalamus ACTAACTGTG 10.9 0.0109 Hypothalamus GAGAGTAACA (4) 7.2 0.0072 Hypothalamus AATATGGATG (6) 5.4 0.0054 Hypothalamus AAACAAAAAA (12) 1.8 0.0018 Hypothalamus TTTATGTTTA (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina ACTAACTGTG 41.3 0.0413 E12.5 retina GTGGTTCACA (32) 28.2 0.0282 E12.5 retina AATATGGATG (6) 15 0.015 E12.5 retina CAAGTGTGGC (4) 3.8 0.0038 E12.5 retina GAGAGTAACA (4) 3.8 0.0038 E12.5 retina TTTATGTTTA (4) 3.8 0.0038 E12.5 retina CTGGTGGGTT 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GTGGTTCACA (32) 51 0.051 E14.5 retina ACTAACTGTG 45.5 0.0455 E14.5 retina AATATGGATG (6) 7.3 0.0073 E14.5 retina GAGAGTAACA (4) 7.3 0.0073 E14.5 retina AAACAAAAAA (12) 1.8 0.0018 E14.5 retina CTGGTGGGTT 1.8 0.0018 E14.5 retina TTTATGTTTA (4) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GTGGTTCACA (32) 39.8 0.0398 E16.5 retina ACTAACTGTG 38 0.038 E16.5 retina AATATGGATG (6) 9.1 0.0091 E16.5 retina GAGAGTAACA (4) 7.2 0.0072 E16.5 retina CTGGTGGGTT 3.6 0.0036 E16.5 retina TTTATGTTTA (4) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina ACTAACTGTG 69.1 0.0691 E18.5 retina GTGGTTCACA (32) 40 0.04 E18.5 retina CTGGTGGGTT 5.5 0.0055 E18.5 retina GAGAGTAACA (4) 5.5 0.0055 E18.5 retina AAACAAAAAA (12) 3.6 0.0036 E18.5 retina ACTAACTGGG 1.8 0.0018 E18.5 retina TTTATGTTTA (4) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina ACTAACTGTG 35.3 0.0353 P0.5 retina GTGGTTCACA (32) 35.3 0.0353 P0.5 retina GAGAGTAACA (4) 13.7 0.0137 P0.5 retina CAAGTGTGGC (4) 5.9 0.0059 P0.5 retina AAGGGTAGCT (2) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina ACTAACTGTG 22.9 0.0229 P2.5 retina GTGGTTCACA (32) 12.3 0.0123 P2.5 retina ACTAACTGGG 3.5 0.0035 P2.5 retina CAAGTGTGGC (4) 3.5 0.0035 P2.5 retina GAATAAATTG (3) 3.5 0.0035 P2.5 retina GAGAGTAACA (4) 3.5 0.0035 P2.5 retina AAACAAAAAA (12) 1.8 0.0018 P2.5 retina AAGGGTAGCT (2) 1.8 0.0018 P2.5 retina AATATGGATG (6) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina ACTAACTGTG 33.7 0.0337 P4.5 retina GTGGTTCACA (32) 33.7 0.0337 P4.5 retina AATATGGATG (6) 5.9 0.0059 P4.5 retina GAGAGTAACA (4) 5.9 0.0059 P4.5 retina AAACAAAAAA (12) 2 0.002 P4.5 retina GAATAAATTG (3) 2 0.002 P4.5 retina GCTGACAGTG (5) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GTGGTTCACA (32) 25 0.025 P6.5 retina ACTAACTGTG 10 0.01 P6.5 retina AATATGGATG (6) 5 0.005 P6.5 retina GAGAGTAACA (4) 3.3 0.0033 P6.5 retina CTGGTGGGTT 1.7 0.0017 P6.5 retina GCTGACAGTG (5) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina ACTAACTGTG 22.3 0.0223 P10.5 crx- retina GTGGTTCACA (32) 20.4 0.0204 P10.5 crx- retina GAGAGTAACA (4) 16.7 0.0167 P10.5 crx- retina AATATGGATG (6) 11.1 0.0111 P10.5 crx- retina CTGGTGGGTT 1.9 0.0019 P10.5 crx- retina GCTGACAGTG (5) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GTGGTTCACA (32) 32.7 0.0327 P10.5 crx+ retina ACTAACTGTG 26.9 0.0269 P10.5 crx+ retina AATATGGATG (6) 5.8 0.0058 P10.5 crx+ retina GAGAGTAACA (4) 5.8 0.0058 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GTGGTTCACA (32) 33.3 0.0333 Adult retinal AATATGGATG (6) 11.1 0.0111 Adult retinal ACTAACTGTG 7.4 0.0074 Adult retinal GCTGACAGTG (5) 5.6 0.0056 Adult retinal CTGGTGGGTT 1.9 0.0019 Adult retinal GAGAGTAACA (4) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GTGGTTCACA (32) 32.6 0.0326 ONL ACTAACTGTG 11.5 0.0115 ONL AATATGGATG (6) 9.6 0.0096 ONL GAGAGTAACA (4) 1.9 0.0019 ONL GCTGACAGTG (5) 1.9 0.0019 ONL TTTATGTTTA (4) 1.9 0.0019